co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G30860

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080053: response to phenylalanine	0.00E+00
2	GO:0002376: immune system process	0.00E+00
3	GO:0006983: ER overload response	0.00E+00
4	GO:0006592: ornithine biosynthetic process	0.00E+00
5	GO:0043201: response to leucine	0.00E+00
6	GO:0080052: response to histidine	0.00E+00
7	GO:0006564: L-serine biosynthetic process	7.69E-06
8	GO:0006102: isocitrate metabolic process	3.06E-05
9	GO:0006772: thiamine metabolic process	6.74E-05
10	GO:0035266: meristem growth	6.74E-05
11	GO:0007292: female gamete generation	6.74E-05
12	GO:0019673: GDP-mannose metabolic process	6.74E-05
13	GO:0043069: negative regulation of programmed cell death	7.18E-05
14	GO:0006099: tricarboxylic acid cycle	7.94E-05
15	GO:0072593: reactive oxygen species metabolic process	8.50E-05
16	GO:0090351: seedling development	1.49E-04
17	GO:0006101: citrate metabolic process	1.62E-04
18	GO:0043066: negative regulation of apoptotic process	1.62E-04
19	GO:0042939: tripeptide transport	1.62E-04
20	GO:0051262: protein tetramerization	1.62E-04
21	GO:0051788: response to misfolded protein	1.62E-04
22	GO:0000162: tryptophan biosynthetic process	1.68E-04
23	GO:0045454: cell redox homeostasis	2.12E-04
24	GO:1902626: assembly of large subunit precursor of preribosome	2.75E-04
25	GO:0042351: 'de novo' GDP-L-fucose biosynthetic process	2.75E-04
26	GO:0042256: mature ribosome assembly	2.75E-04
27	GO:0060968: regulation of gene silencing	2.75E-04
28	GO:0051091: positive regulation of sequence-specific DNA binding transcription factor activity	2.75E-04
29	GO:0033014: tetrapyrrole biosynthetic process	3.98E-04
30	GO:0007231: osmosensory signaling pathway	3.98E-04
31	GO:0006979: response to oxidative stress	4.23E-04
32	GO:0000460: maturation of 5.8S rRNA	5.32E-04
33	GO:0033500: carbohydrate homeostasis	5.32E-04
34	GO:0042938: dipeptide transport	5.32E-04
35	GO:0070534: protein K63-linked ubiquitination	5.32E-04
36	GO:0010387: COP9 signalosome assembly	5.32E-04
37	GO:1902584: positive regulation of response to water deprivation	5.32E-04
38	GO:0010150: leaf senescence	5.47E-04
39	GO:0009697: salicylic acid biosynthetic process	6.73E-04
40	GO:0006097: glyoxylate cycle	6.73E-04
41	GO:0009229: thiamine diphosphate biosynthetic process	6.73E-04
42	GO:0045927: positive regulation of growth	6.73E-04
43	GO:0006014: D-ribose metabolic process	8.23E-04
44	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	8.23E-04
45	GO:0006121: mitochondrial electron transport, succinate to ubiquinone	8.23E-04
46	GO:0006301: postreplication repair	8.23E-04
47	GO:0048827: phyllome development	8.23E-04
48	GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation	8.23E-04
49	GO:0048232: male gamete generation	8.23E-04
50	GO:0000470: maturation of LSU-rRNA	8.23E-04
51	GO:0043248: proteasome assembly	8.23E-04
52	GO:0046686: response to cadmium ion	9.11E-04
53	GO:0098655: cation transmembrane transport	9.79E-04
54	GO:0015977: carbon fixation	9.79E-04
55	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	9.79E-04
56	GO:0034389: lipid particle organization	9.79E-04
57	GO:0000054: ribosomal subunit export from nucleus	9.79E-04
58	GO:0010043: response to zinc ion	9.93E-04
59	GO:0045087: innate immune response	1.08E-03
60	GO:0006511: ubiquitin-dependent protein catabolic process	1.14E-03
61	GO:0080186: developmental vegetative growth	1.14E-03
62	GO:0000338: protein deneddylation	1.14E-03
63	GO:0010078: maintenance of root meristem identity	1.32E-03
64	GO:0009819: drought recovery	1.32E-03
65	GO:0006875: cellular metal ion homeostasis	1.32E-03
66	GO:0006526: arginine biosynthetic process	1.50E-03
67	GO:0030968: endoplasmic reticulum unfolded protein response	1.50E-03
68	GO:0006783: heme biosynthetic process	1.69E-03
69	GO:0071577: zinc II ion transmembrane transport	1.89E-03
70	GO:0043067: regulation of programmed cell death	1.89E-03
71	GO:0048829: root cap development	2.10E-03
72	GO:0010015: root morphogenesis	2.31E-03
73	GO:0000038: very long-chain fatty acid metabolic process	2.31E-03
74	GO:0009807: lignan biosynthetic process	2.31E-03
75	GO:0009933: meristem structural organization	2.99E-03
76	GO:0010039: response to iron ion	3.23E-03
77	GO:0010053: root epidermal cell differentiation	3.23E-03
78	GO:0034976: response to endoplasmic reticulum stress	3.48E-03
79	GO:0009735: response to cytokinin	3.67E-03
80	GO:2000377: regulation of reactive oxygen species metabolic process	3.73E-03
81	GO:0006487: protein N-linked glycosylation	3.73E-03
82	GO:0009790: embryo development	3.79E-03
83	GO:0009695: jasmonic acid biosynthetic process	3.99E-03
84	GO:0009416: response to light stimulus	4.12E-03
85	GO:0031408: oxylipin biosynthetic process	4.26E-03
86	GO:0030433: ubiquitin-dependent ERAD pathway	4.53E-03
87	GO:0031348: negative regulation of defense response	4.53E-03
88	GO:0009625: response to insect	4.81E-03
89	GO:0006012: galactose metabolic process	4.81E-03
90	GO:0071215: cellular response to abscisic acid stimulus	4.81E-03
91	GO:0000413: protein peptidyl-prolyl isomerization	5.68E-03
92	GO:0042631: cellular response to water deprivation	5.68E-03
93	GO:0009646: response to absence of light	6.28E-03
94	GO:0019252: starch biosynthetic process	6.60E-03
95	GO:0009826: unidimensional cell growth	6.65E-03
96	GO:0000302: response to reactive oxygen species	6.91E-03
97	GO:0006952: defense response	8.36E-03
98	GO:0015995: chlorophyll biosynthetic process	1.00E-02
99	GO:0042742: defense response to bacterium	1.01E-02
100	GO:0010311: lateral root formation	1.11E-02
101	GO:0006499: N-terminal protein myristoylation	1.15E-02
102	GO:0009751: response to salicylic acid	1.25E-02
103	GO:0009408: response to heat	1.27E-02
104	GO:0009753: response to jasmonic acid	1.36E-02
105	GO:0009640: photomorphogenesis	1.52E-02
106	GO:0009965: leaf morphogenesis	1.65E-02
107	GO:0006855: drug transmembrane transport	1.70E-02
108	GO:0006812: cation transport	1.79E-02
109	GO:0009846: pollen germination	1.79E-02
110	GO:0042538: hyperosmotic salinity response	1.79E-02
111	GO:0009585: red, far-red light phototransduction	1.88E-02
112	GO:0051603: proteolysis involved in cellular protein catabolic process	1.93E-02
113	GO:0006857: oligopeptide transport	1.97E-02
114	GO:0048367: shoot system development	2.17E-02
115	GO:0048316: seed development	2.17E-02
116	GO:0009555: pollen development	2.26E-02
117	GO:0009611: response to wounding	2.31E-02
118	GO:0007275: multicellular organism development	2.37E-02
119	GO:0009624: response to nematode	2.42E-02
120	GO:0009737: response to abscisic acid	2.62E-02
121	GO:0006457: protein folding	2.92E-02
122	GO:0042744: hydrogen peroxide catabolic process	3.11E-02
123	GO:0016036: cellular response to phosphate starvation	3.39E-02
124	GO:0006413: translational initiation	3.39E-02
125	GO:0040008: regulation of growth	3.45E-02
126	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	3.86E-02
127	GO:0009617: response to bacterium	4.04E-02
128	GO:0006508: proteolysis	4.12E-02
129	GO:0009414: response to water deprivation	4.44E-02
130	GO:0009651: response to salt stress	4.58E-02

Rank	GO Term	Adjusted P value
1	GO:0008777: acetylornithine deacetylase activity	0.00E+00
2	GO:0050220: prostaglandin-E synthase activity	0.00E+00
3	GO:0004321: fatty-acyl-CoA synthase activity	6.74E-05
4	GO:0004788: thiamine diphosphokinase activity	6.74E-05
5	GO:0004648: O-phospho-L-serine:2-oxoglutarate aminotransferase activity	6.74E-05
6	GO:0004425: indole-3-glycerol-phosphate synthase activity	6.74E-05
7	GO:0004112: cyclic-nucleotide phosphodiesterase activity	6.74E-05
8	GO:0008446: GDP-mannose 4,6-dehydratase activity	6.74E-05
9	GO:0004048: anthranilate phosphoribosyltransferase activity	6.74E-05
10	GO:0004325: ferrochelatase activity	6.74E-05
11	GO:0018708: thiol S-methyltransferase activity	1.62E-04
12	GO:0042937: tripeptide transporter activity	1.62E-04
13	GO:0004617: phosphoglycerate dehydrogenase activity	1.62E-04
14	GO:0003994: aconitate hydratase activity	1.62E-04
15	GO:0004298: threonine-type endopeptidase activity	2.30E-04
16	GO:0008430: selenium binding	2.75E-04
17	GO:0016174: NAD(P)H oxidase activity	2.75E-04
18	GO:0008964: phosphoenolpyruvate carboxylase activity	2.75E-04
19	GO:0043023: ribosomal large subunit binding	3.98E-04
20	GO:0004449: isocitrate dehydrogenase (NAD+) activity	3.98E-04
21	GO:0042936: dipeptide transporter activity	5.32E-04
22	GO:0015301: anion:anion antiporter activity	6.73E-04
23	GO:0005452: inorganic anion exchanger activity	6.73E-04
24	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	6.73E-04
25	GO:0000104: succinate dehydrogenase activity	6.73E-04
26	GO:0036402: proteasome-activating ATPase activity	8.23E-04
27	GO:0004601: peroxidase activity	9.40E-04
28	GO:0051920: peroxiredoxin activity	9.79E-04
29	GO:0004747: ribokinase activity	9.79E-04
30	GO:0008233: peptidase activity	1.20E-03
31	GO:0043022: ribosome binding	1.32E-03
32	GO:0016209: antioxidant activity	1.32E-03
33	GO:0004034: aldose 1-epimerase activity	1.32E-03
34	GO:0008865: fructokinase activity	1.32E-03
35	GO:0016207: 4-coumarate-CoA ligase activity	1.69E-03
36	GO:0005509: calcium ion binding	1.85E-03
37	GO:0008794: arsenate reductase (glutaredoxin) activity	2.31E-03
38	GO:0015035: protein disulfide oxidoreductase activity	2.69E-03
39	GO:0017025: TBP-class protein binding	3.23E-03
40	GO:0004190: aspartic-type endopeptidase activity	3.23E-03
41	GO:0005385: zinc ion transmembrane transporter activity	3.73E-03
42	GO:0008324: cation transmembrane transporter activity	3.99E-03
43	GO:0003756: protein disulfide isomerase activity	5.09E-03
44	GO:0046873: metal ion transmembrane transporter activity	5.98E-03
45	GO:0016853: isomerase activity	6.28E-03
46	GO:0008237: metallopeptidase activity	8.24E-03
47	GO:0016597: amino acid binding	8.59E-03
48	GO:0015238: drug transmembrane transporter activity	1.11E-02
49	GO:0004222: metalloendopeptidase activity	1.15E-02
50	GO:0003746: translation elongation factor activity	1.27E-02
51	GO:0009055: electron carrier activity	1.36E-02
52	GO:0051539: 4 iron, 4 sulfur cluster binding	1.39E-02
53	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.70E-02
54	GO:0051287: NAD binding	1.74E-02
55	GO:0031625: ubiquitin protein ligase binding	2.02E-02
56	GO:0016874: ligase activity	2.31E-02
57	GO:0016746: transferase activity, transferring acyl groups	2.47E-02
58	GO:0005507: copper ion binding	3.21E-02
59	GO:0015297: antiporter activity	3.45E-02
60	GO:0005525: GTP binding	3.71E-02
61	GO:0003743: translation initiation factor activity	3.98E-02
62	GO:0008168: methyltransferase activity	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0000327: lytic vacuole within protein storage vacuole	0.00E+00
2	GO:0005783: endoplasmic reticulum	6.73E-05
3	GO:0000502: proteasome complex	1.66E-04
4	GO:0005839: proteasome core complex	2.30E-04
5	GO:0031372: UBC13-MMS2 complex	5.32E-04
6	GO:0030660: Golgi-associated vesicle membrane	5.32E-04
7	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	5.32E-04
8	GO:0005829: cytosol	5.64E-04
9	GO:0005886: plasma membrane	5.64E-04
10	GO:0009536: plastid	6.01E-04
11	GO:0008250: oligosaccharyltransferase complex	6.73E-04
12	GO:0005789: endoplasmic reticulum membrane	8.82E-04
13	GO:0031597: cytosolic proteasome complex	9.79E-04
14	GO:0031595: nuclear proteasome complex	1.14E-03
15	GO:0030687: preribosome, large subunit precursor	1.14E-03
16	GO:0031969: chloroplast membrane	1.22E-03
17	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	1.32E-03
18	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	1.32E-03
19	GO:0005811: lipid particle	1.50E-03
20	GO:0000326: protein storage vacuole	1.50E-03
21	GO:0019773: proteasome core complex, alpha-subunit complex	1.50E-03
22	GO:0008180: COP9 signalosome	1.69E-03
23	GO:0031090: organelle membrane	1.69E-03
24	GO:0005737: cytoplasm	1.75E-03
25	GO:0008540: proteasome regulatory particle, base subcomplex	1.89E-03
26	GO:0005765: lysosomal membrane	2.31E-03
27	GO:0009507: chloroplast	2.83E-03
28	GO:0009505: plant-type cell wall	2.94E-03
29	GO:0005794: Golgi apparatus	8.54E-03
30	GO:0005788: endoplasmic reticulum lumen	9.29E-03
31	GO:0009570: chloroplast stroma	1.12E-02
32	GO:0048046: apoplast	1.47E-02
33	GO:0005635: nuclear envelope	1.97E-02
34	GO:0009941: chloroplast envelope	2.16E-02
35	GO:0005773: vacuole	2.59E-02
36	GO:0005759: mitochondrial matrix	3.33E-02
37	GO:0005774: vacuolar membrane	4.76E-02