Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G30790

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0033494: ferulate metabolic process0.00E+00
2GO:0010430: fatty acid omega-oxidation0.00E+00
3GO:2000121: regulation of removal of superoxide radicals0.00E+00
4GO:0007638: mechanosensory behavior0.00E+00
5GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
6GO:0042493: response to drug0.00E+00
7GO:0019284: L-methionine salvage from S-adenosylmethionine0.00E+00
8GO:2000505: regulation of energy homeostasis0.00E+00
9GO:0009773: photosynthetic electron transport in photosystem I7.93E-10
10GO:0015995: chlorophyll biosynthetic process2.40E-05
11GO:0010411: xyloglucan metabolic process2.40E-05
12GO:0010206: photosystem II repair4.75E-05
13GO:0034220: ion transmembrane transport5.90E-05
14GO:0080170: hydrogen peroxide transmembrane transport7.31E-05
15GO:0006546: glycine catabolic process1.27E-04
16GO:0016123: xanthophyll biosynthetic process1.96E-04
17GO:0015979: photosynthesis2.37E-04
18GO:0006833: water transport2.48E-04
19GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process4.76E-04
20GO:0071370: cellular response to gibberellin stimulus4.76E-04
21GO:0006824: cobalt ion transport4.76E-04
22GO:0000481: maturation of 5S rRNA4.76E-04
23GO:0080051: cutin transport4.76E-04
24GO:0071461: cellular response to redox state4.76E-04
25GO:0034337: RNA folding4.76E-04
26GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway4.76E-04
27GO:0071588: hydrogen peroxide mediated signaling pathway4.76E-04
28GO:0010729: positive regulation of hydrogen peroxide biosynthetic process4.76E-04
29GO:0060627: regulation of vesicle-mediated transport4.76E-04
30GO:0010196: nonphotochemical quenching4.78E-04
31GO:0042546: cell wall biogenesis7.13E-04
32GO:0071482: cellular response to light stimulus7.27E-04
33GO:0006810: transport8.57E-04
34GO:0080005: photosystem stoichiometry adjustment1.02E-03
35GO:0015908: fatty acid transport1.02E-03
36GO:0010541: acropetal auxin transport1.02E-03
37GO:0034755: iron ion transmembrane transport1.02E-03
38GO:0030388: fructose 1,6-bisphosphate metabolic process1.02E-03
39GO:0010289: homogalacturonan biosynthetic process1.02E-03
40GO:0010027: thylakoid membrane organization1.47E-03
41GO:0006000: fructose metabolic process1.67E-03
42GO:0046168: glycerol-3-phosphate catabolic process1.67E-03
43GO:0090391: granum assembly1.67E-03
44GO:0006518: peptide metabolic process1.67E-03
45GO:0010160: formation of animal organ boundary1.67E-03
46GO:0045493: xylan catabolic process1.67E-03
47GO:2001295: malonyl-CoA biosynthetic process1.67E-03
48GO:0008152: metabolic process1.97E-03
49GO:0010143: cutin biosynthetic process2.02E-03
50GO:0005985: sucrose metabolic process2.26E-03
51GO:0009650: UV protection2.42E-03
52GO:0043481: anthocyanin accumulation in tissues in response to UV light2.42E-03
53GO:0010306: rhamnogalacturonan II biosynthetic process2.42E-03
54GO:0006072: glycerol-3-phosphate metabolic process2.42E-03
55GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.42E-03
56GO:0010731: protein glutathionylation2.42E-03
57GO:1901332: negative regulation of lateral root development2.42E-03
58GO:2001141: regulation of RNA biosynthetic process2.42E-03
59GO:0046836: glycolipid transport2.42E-03
60GO:0009413: response to flooding2.42E-03
61GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.42E-03
62GO:0051513: regulation of monopolar cell growth2.42E-03
63GO:0007231: osmosensory signaling pathway2.42E-03
64GO:0071484: cellular response to light intensity2.42E-03
65GO:0051639: actin filament network formation2.42E-03
66GO:0009152: purine ribonucleotide biosynthetic process2.42E-03
67GO:0046653: tetrahydrofolate metabolic process2.42E-03
68GO:0034059: response to anoxia2.42E-03
69GO:0071555: cell wall organization2.55E-03
70GO:0005975: carbohydrate metabolic process2.56E-03
71GO:0006085: acetyl-CoA biosynthetic process3.26E-03
72GO:0006183: GTP biosynthetic process3.26E-03
73GO:0045727: positive regulation of translation3.26E-03
74GO:0015994: chlorophyll metabolic process3.26E-03
75GO:2000122: negative regulation of stomatal complex development3.26E-03
76GO:0030104: water homeostasis3.26E-03
77GO:0033500: carbohydrate homeostasis3.26E-03
78GO:0031122: cytoplasmic microtubule organization3.26E-03
79GO:0010021: amylopectin biosynthetic process3.26E-03
80GO:0010037: response to carbon dioxide3.26E-03
81GO:0010222: stem vascular tissue pattern formation3.26E-03
82GO:0015976: carbon utilization3.26E-03
83GO:0051764: actin crosslink formation3.26E-03
84GO:0019464: glycine decarboxylation via glycine cleavage system3.26E-03
85GO:0009765: photosynthesis, light harvesting3.26E-03
86GO:0034052: positive regulation of plant-type hypersensitive response4.18E-03
87GO:0016120: carotene biosynthetic process4.18E-03
88GO:0010117: photoprotection4.18E-03
89GO:0060918: auxin transport5.18E-03
90GO:0018258: protein O-linked glycosylation via hydroxyproline5.18E-03
91GO:0010405: arabinogalactan protein metabolic process5.18E-03
92GO:0006751: glutathione catabolic process5.18E-03
93GO:0010256: endomembrane system organization5.18E-03
94GO:0016042: lipid catabolic process5.57E-03
95GO:0009612: response to mechanical stimulus6.24E-03
96GO:0010019: chloroplast-nucleus signaling pathway6.24E-03
97GO:0019509: L-methionine salvage from methylthioadenosine6.24E-03
98GO:0000302: response to reactive oxygen species6.91E-03
99GO:0009645: response to low light intensity stimulus7.39E-03
100GO:0009819: drought recovery8.60E-03
101GO:0043068: positive regulation of programmed cell death8.60E-03
102GO:0032508: DNA duplex unwinding8.60E-03
103GO:0045010: actin nucleation8.60E-03
104GO:0032544: plastid translation9.88E-03
105GO:0006002: fructose 6-phosphate metabolic process9.88E-03
106GO:0090305: nucleic acid phosphodiester bond hydrolysis1.12E-02
107GO:0009051: pentose-phosphate shunt, oxidative branch1.12E-02
108GO:0009638: phototropism1.26E-02
109GO:0009735: response to cytokinin1.36E-02
110GO:0042744: hydrogen peroxide catabolic process1.40E-02
111GO:0019538: protein metabolic process1.41E-02
112GO:0009870: defense response signaling pathway, resistance gene-dependent1.41E-02
113GO:0010218: response to far red light1.45E-02
114GO:0045454: cell redox homeostasis1.48E-02
115GO:0006816: calcium ion transport1.56E-02
116GO:0006352: DNA-templated transcription, initiation1.56E-02
117GO:0009684: indoleacetic acid biosynthetic process1.56E-02
118GO:0010015: root morphogenesis1.56E-02
119GO:0009637: response to blue light1.67E-02
120GO:0006869: lipid transport1.70E-02
121GO:0006820: anion transport1.72E-02
122GO:0016024: CDP-diacylglycerol biosynthetic process1.72E-02
123GO:0008361: regulation of cell size1.72E-02
124GO:0034599: cellular response to oxidative stress1.75E-02
125GO:0045490: pectin catabolic process1.79E-02
126GO:0010588: cotyledon vascular tissue pattern formation1.88E-02
127GO:0010102: lateral root morphogenesis1.88E-02
128GO:0006006: glucose metabolic process1.88E-02
129GO:0030036: actin cytoskeleton organization1.88E-02
130GO:0006094: gluconeogenesis1.88E-02
131GO:0005986: sucrose biosynthetic process1.88E-02
132GO:0010207: photosystem II assembly2.05E-02
133GO:0019253: reductive pentose-phosphate cycle2.05E-02
134GO:0010540: basipetal auxin transport2.05E-02
135GO:0010030: positive regulation of seed germination2.23E-02
136GO:0070588: calcium ion transmembrane transport2.23E-02
137GO:0010025: wax biosynthetic process2.41E-02
138GO:0051017: actin filament bundle assembly2.59E-02
139GO:0005992: trehalose biosynthetic process2.59E-02
140GO:0009664: plant-type cell wall organization2.71E-02
141GO:0007017: microtubule-based process2.78E-02
142GO:0009768: photosynthesis, light harvesting in photosystem I2.78E-02
143GO:0016998: cell wall macromolecule catabolic process2.97E-02
144GO:0048511: rhythmic process2.97E-02
145GO:0009658: chloroplast organization3.09E-02
146GO:0009814: defense response, incompatible interaction3.17E-02
147GO:0035428: hexose transmembrane transport3.17E-02
148GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.37E-02
149GO:0009411: response to UV3.37E-02
150GO:0006012: galactose metabolic process3.37E-02
151GO:0048443: stamen development3.58E-02
152GO:0006284: base-excision repair3.58E-02
153GO:0009306: protein secretion3.58E-02
154GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.79E-02
155GO:0016117: carotenoid biosynthetic process3.79E-02
156GO:0042335: cuticle development4.01E-02
157GO:0080022: primary root development4.01E-02
158GO:0000413: protein peptidyl-prolyl isomerization4.01E-02
159GO:0042631: cellular response to water deprivation4.01E-02
160GO:0080167: response to karrikin4.04E-02
161GO:0009624: response to nematode4.13E-02
162GO:0009958: positive gravitropism4.23E-02
163GO:0048868: pollen tube development4.23E-02
164GO:0046323: glucose import4.23E-02
165GO:0042752: regulation of circadian rhythm4.45E-02
166GO:0019252: starch biosynthetic process4.68E-02
167GO:0048510: regulation of timing of transition from vegetative to reproductive phase4.91E-02
168GO:0071554: cell wall organization or biogenesis4.91E-02
169GO:0002229: defense response to oomycetes4.91E-02
RankGO TermAdjusted P value
1GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
2GO:0043864: indoleacetamide hydrolase activity0.00E+00
3GO:0046570: methylthioribulose 1-phosphate dehydratase activity0.00E+00
4GO:0043874: acireductone synthase activity0.00E+00
5GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
6GO:0045435: lycopene epsilon cyclase activity0.00E+00
7GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
8GO:0019146: arabinose-5-phosphate isomerase activity0.00E+00
9GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
10GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
11GO:0016851: magnesium chelatase activity5.10E-07
12GO:0016762: xyloglucan:xyloglucosyl transferase activity1.02E-04
13GO:0015250: water channel activity1.97E-04
14GO:0016798: hydrolase activity, acting on glycosyl bonds2.60E-04
15GO:0004130: cytochrome-c peroxidase activity2.78E-04
16GO:0005528: FK506 binding2.86E-04
17GO:0051920: peroxiredoxin activity3.72E-04
18GO:0030570: pectate lyase activity4.71E-04
19GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity4.76E-04
20GO:0008568: microtubule-severing ATPase activity4.76E-04
21GO:0015245: fatty acid transporter activity4.76E-04
22GO:0004328: formamidase activity4.76E-04
23GO:0016788: hydrolase activity, acting on ester bonds5.06E-04
24GO:0016209: antioxidant activity5.96E-04
25GO:0003755: peptidyl-prolyl cis-trans isomerase activity8.48E-04
26GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds9.16E-04
27GO:0052689: carboxylic ester hydrolase activity9.17E-04
28GO:0046593: mandelonitrile lyase activity1.02E-03
29GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity1.02E-03
30GO:0047746: chlorophyllase activity1.02E-03
31GO:0016868: intramolecular transferase activity, phosphotransferases1.02E-03
32GO:0003839: gamma-glutamylcyclotransferase activity1.02E-03
33GO:0003938: IMP dehydrogenase activity1.02E-03
34GO:0004047: aminomethyltransferase activity1.02E-03
35GO:0033201: alpha-1,4-glucan synthase activity1.02E-03
36GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity1.02E-03
37GO:0070330: aromatase activity1.67E-03
38GO:0004373: glycogen (starch) synthase activity1.67E-03
39GO:0050734: hydroxycinnamoyltransferase activity1.67E-03
40GO:0004075: biotin carboxylase activity1.67E-03
41GO:0045174: glutathione dehydrogenase (ascorbate) activity1.67E-03
42GO:0030267: glyoxylate reductase (NADP) activity1.67E-03
43GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.67E-03
44GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity1.67E-03
45GO:0008864: formyltetrahydrofolate deformylase activity1.67E-03
46GO:0010277: chlorophyllide a oxygenase [overall] activity1.67E-03
47GO:0004565: beta-galactosidase activity1.79E-03
48GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides2.42E-03
49GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity2.42E-03
50GO:0017089: glycolipid transporter activity2.42E-03
51GO:0003878: ATP citrate synthase activity2.42E-03
52GO:0004375: glycine dehydrogenase (decarboxylating) activity2.42E-03
53GO:0016987: sigma factor activity3.26E-03
54GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds3.26E-03
55GO:1990137: plant seed peroxidase activity3.26E-03
56GO:0009011: starch synthase activity3.26E-03
57GO:0009044: xylan 1,4-beta-xylosidase activity3.26E-03
58GO:0052793: pectin acetylesterase activity3.26E-03
59GO:0046556: alpha-L-arabinofuranosidase activity3.26E-03
60GO:0001053: plastid sigma factor activity3.26E-03
61GO:0004345: glucose-6-phosphate dehydrogenase activity3.26E-03
62GO:0016836: hydro-lyase activity3.26E-03
63GO:0051861: glycolipid binding3.26E-03
64GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor3.26E-03
65GO:0004045: aminoacyl-tRNA hydrolase activity3.26E-03
66GO:0018685: alkane 1-monooxygenase activity4.18E-03
67GO:0004040: amidase activity4.18E-03
68GO:0003989: acetyl-CoA carboxylase activity4.18E-03
69GO:0008725: DNA-3-methyladenine glycosylase activity4.18E-03
70GO:0008381: mechanically-gated ion channel activity4.18E-03
71GO:0004366: glycerol-3-phosphate O-acyltransferase activity5.18E-03
72GO:0016688: L-ascorbate peroxidase activity5.18E-03
73GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity5.18E-03
74GO:0008200: ion channel inhibitor activity5.18E-03
75GO:1990714: hydroxyproline O-galactosyltransferase activity5.18E-03
76GO:0004017: adenylate kinase activity6.24E-03
77GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity6.24E-03
78GO:0016832: aldehyde-lyase activity6.24E-03
79GO:0004601: peroxidase activity8.11E-03
80GO:0004034: aldose 1-epimerase activity8.60E-03
81GO:0004033: aldo-keto reductase (NADP) activity8.60E-03
82GO:0004564: beta-fructofuranosidase activity8.60E-03
83GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors1.12E-02
84GO:0019843: rRNA binding1.19E-02
85GO:0008236: serine-type peptidase activity1.25E-02
86GO:0004575: sucrose alpha-glucosidase activity1.26E-02
87GO:0005381: iron ion transmembrane transporter activity1.26E-02
88GO:0016829: lyase activity1.31E-02
89GO:0005096: GTPase activator activity1.38E-02
90GO:0004805: trehalose-phosphatase activity1.41E-02
91GO:0047372: acylglycerol lipase activity1.56E-02
92GO:0004871: signal transducer activity1.59E-02
93GO:0008378: galactosyltransferase activity1.72E-02
94GO:0010329: auxin efflux transmembrane transporter activity1.88E-02
95GO:0004089: carbonate dehydratase activity1.88E-02
96GO:0031072: heat shock protein binding1.88E-02
97GO:0005262: calcium channel activity1.88E-02
98GO:0008266: poly(U) RNA binding2.05E-02
99GO:0004364: glutathione transferase activity2.07E-02
100GO:0051537: 2 iron, 2 sulfur cluster binding2.33E-02
101GO:0031409: pigment binding2.41E-02
102GO:0042626: ATPase activity, coupled to transmembrane movement of substances2.42E-02
103GO:0030246: carbohydrate binding2.63E-02
104GO:0004176: ATP-dependent peptidase activity2.97E-02
105GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity3.17E-02
106GO:0008289: lipid binding3.29E-02
107GO:0016787: hydrolase activity3.56E-02
108GO:0003756: protein disulfide isomerase activity3.58E-02
109GO:0046872: metal ion binding4.22E-02
110GO:0005355: glucose transmembrane transporter activity4.45E-02
111GO:0050662: coenzyme binding4.45E-02
112GO:0016853: isomerase activity4.45E-02
113GO:0048038: quinone binding4.91E-02
RankGO TermAdjusted P value
1GO:0098572: stromal side of plastid thylakoid membrane0.00E+00
2GO:0009507: chloroplast5.09E-27
3GO:0009534: chloroplast thylakoid1.22E-25
4GO:0009535: chloroplast thylakoid membrane4.80E-21
5GO:0009570: chloroplast stroma5.74E-19
6GO:0009941: chloroplast envelope9.24E-15
7GO:0009543: chloroplast thylakoid lumen7.62E-12
8GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.35E-08
9GO:0048046: apoplast1.40E-08
10GO:0010007: magnesium chelatase complex1.06E-07
11GO:0031977: thylakoid lumen3.67E-07
12GO:0009505: plant-type cell wall1.76E-06
13GO:0009579: thylakoid8.45E-06
14GO:0005618: cell wall1.53E-04
15GO:0005576: extracellular region3.03E-04
16GO:0043674: columella4.76E-04
17GO:0009515: granal stacked thylakoid4.76E-04
18GO:0009533: chloroplast stromal thylakoid4.78E-04
19GO:0010287: plastoglobule4.79E-04
20GO:0009897: external side of plasma membrane1.67E-03
21GO:0009706: chloroplast inner membrane1.80E-03
22GO:0032432: actin filament bundle2.42E-03
23GO:0005960: glycine cleavage complex2.42E-03
24GO:0009331: glycerol-3-phosphate dehydrogenase complex2.42E-03
25GO:0009346: citrate lyase complex2.42E-03
26GO:0009531: secondary cell wall2.42E-03
27GO:0005775: vacuolar lumen2.42E-03
28GO:0031969: chloroplast membrane2.95E-03
29GO:0042651: thylakoid membrane3.09E-03
30GO:0009654: photosystem II oxygen evolving complex3.09E-03
31GO:0016020: membrane3.13E-03
32GO:0031209: SCAR complex5.18E-03
33GO:0019898: extrinsic component of membrane6.45E-03
34GO:0042807: central vacuole7.39E-03
35GO:0009501: amyloplast8.60E-03
36GO:0010319: stromule8.92E-03
37GO:0005811: lipid particle9.88E-03
38GO:0005887: integral component of plasma membrane1.00E-02
39GO:0042644: chloroplast nucleoid1.12E-02
40GO:0045298: tubulin complex1.12E-02
41GO:0005886: plasma membrane1.50E-02
42GO:0005884: actin filament1.56E-02
43GO:0032040: small-subunit processome1.72E-02
44GO:0009508: plastid chromosome1.88E-02
45GO:0030095: chloroplast photosystem II2.05E-02
46GO:0030076: light-harvesting complex2.23E-02
47GO:0005875: microtubule associated complex2.41E-02
48GO:0005773: vacuole2.70E-02
49GO:0009522: photosystem I4.45E-02
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Gene type



Gene DE type