Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G30150

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
2GO:0090071: negative regulation of ribosome biogenesis0.00E+00
3GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
4GO:0042821: pyridoxal biosynthetic process0.00E+00
5GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
6GO:0006223: uracil salvage0.00E+00
7GO:0097164: ammonium ion metabolic process0.00E+00
8GO:0060416: response to growth hormone0.00E+00
9GO:0042820: vitamin B6 catabolic process0.00E+00
10GO:1905499: trichome papilla formation0.00E+00
11GO:0006353: DNA-templated transcription, termination2.27E-06
12GO:0032544: plastid translation3.33E-06
13GO:0032502: developmental process7.33E-06
14GO:0015995: chlorophyll biosynthetic process1.96E-05
15GO:0042372: phylloquinone biosynthetic process8.36E-05
16GO:0016117: carotenoid biosynthetic process8.58E-05
17GO:0042255: ribosome assembly1.43E-04
18GO:0009658: chloroplast organization1.54E-04
19GO:0009443: pyridoxal 5'-phosphate salvage1.82E-04
20GO:0042371: vitamin K biosynthetic process1.82E-04
21GO:0006436: tryptophanyl-tRNA aminoacylation1.82E-04
22GO:0043007: maintenance of rDNA1.82E-04
23GO:0010027: thylakoid membrane organization2.47E-04
24GO:0006782: protoporphyrinogen IX biosynthetic process3.05E-04
25GO:0070981: L-asparagine biosynthetic process4.10E-04
26GO:0018026: peptidyl-lysine monomethylation4.10E-04
27GO:0080148: negative regulation of response to water deprivation4.10E-04
28GO:0006529: asparagine biosynthetic process4.10E-04
29GO:0008616: queuosine biosynthetic process4.10E-04
30GO:0006568: tryptophan metabolic process4.10E-04
31GO:2000123: positive regulation of stomatal complex development4.10E-04
32GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition6.69E-04
33GO:0006518: peptide metabolic process6.69E-04
34GO:0051604: protein maturation6.69E-04
35GO:0006760: folic acid-containing compound metabolic process6.69E-04
36GO:0019344: cysteine biosynthetic process7.17E-04
37GO:0006241: CTP biosynthetic process9.55E-04
38GO:0006165: nucleoside diphosphate phosphorylation9.55E-04
39GO:0006228: UTP biosynthetic process9.55E-04
40GO:0046739: transport of virus in multicellular host9.55E-04
41GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis9.55E-04
42GO:0010239: chloroplast mRNA processing9.55E-04
43GO:0006183: GTP biosynthetic process1.27E-03
44GO:0030007: cellular potassium ion homeostasis1.27E-03
45GO:0044206: UMP salvage1.27E-03
46GO:2000038: regulation of stomatal complex development1.27E-03
47GO:0006749: glutathione metabolic process1.27E-03
48GO:0046656: folic acid biosynthetic process1.27E-03
49GO:0006021: inositol biosynthetic process1.27E-03
50GO:0015976: carbon utilization1.27E-03
51GO:0009765: photosynthesis, light harvesting1.27E-03
52GO:0015979: photosynthesis1.60E-03
53GO:0010375: stomatal complex patterning1.61E-03
54GO:0016120: carotene biosynthetic process1.61E-03
55GO:0043097: pyrimidine nucleoside salvage1.61E-03
56GO:0010236: plastoquinone biosynthetic process1.61E-03
57GO:0045038: protein import into chloroplast thylakoid membrane1.61E-03
58GO:0016123: xanthophyll biosynthetic process1.61E-03
59GO:0006665: sphingolipid metabolic process1.61E-03
60GO:0006655: phosphatidylglycerol biosynthetic process1.98E-03
61GO:0006206: pyrimidine nucleobase metabolic process1.98E-03
62GO:0042793: transcription from plastid promoter1.98E-03
63GO:0010190: cytochrome b6f complex assembly1.98E-03
64GO:0046855: inositol phosphate dephosphorylation1.98E-03
65GO:0009117: nucleotide metabolic process1.98E-03
66GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway1.98E-03
67GO:0007267: cell-cell signaling2.19E-03
68GO:1901259: chloroplast rRNA processing2.38E-03
69GO:0017148: negative regulation of translation2.38E-03
70GO:0048280: vesicle fusion with Golgi apparatus2.38E-03
71GO:0046654: tetrahydrofolate biosynthetic process2.38E-03
72GO:0030488: tRNA methylation2.38E-03
73GO:0010019: chloroplast-nucleus signaling pathway2.38E-03
74GO:0010555: response to mannitol2.38E-03
75GO:0006633: fatty acid biosynthetic process2.63E-03
76GO:0006614: SRP-dependent cotranslational protein targeting to membrane2.80E-03
77GO:0009772: photosynthetic electron transport in photosystem II2.80E-03
78GO:0009642: response to light intensity3.24E-03
79GO:0006875: cellular metal ion homeostasis3.24E-03
80GO:0009690: cytokinin metabolic process3.24E-03
81GO:0009704: de-etiolation3.24E-03
82GO:0052543: callose deposition in cell wall3.24E-03
83GO:0048564: photosystem I assembly3.24E-03
84GO:0010497: plasmodesmata-mediated intercellular transport3.71E-03
85GO:0009657: plastid organization3.71E-03
86GO:0017004: cytochrome complex assembly3.71E-03
87GO:0034765: regulation of ion transmembrane transport4.20E-03
88GO:0006783: heme biosynthetic process4.20E-03
89GO:0048589: developmental growth4.20E-03
90GO:0042761: very long-chain fatty acid biosynthetic process4.71E-03
91GO:0006779: porphyrin-containing compound biosynthetic process4.71E-03
92GO:0006896: Golgi to vacuole transport5.24E-03
93GO:0006535: cysteine biosynthetic process from serine5.24E-03
94GO:0045036: protein targeting to chloroplast5.24E-03
95GO:0042254: ribosome biogenesis5.28E-03
96GO:0009073: aromatic amino acid family biosynthetic process5.79E-03
97GO:0006415: translational termination5.79E-03
98GO:0018119: peptidyl-cysteine S-nitrosylation5.79E-03
99GO:0016024: CDP-diacylglycerol biosynthetic process6.35E-03
100GO:0045037: protein import into chloroplast stroma6.35E-03
101GO:0006790: sulfur compound metabolic process6.35E-03
102GO:0006541: glutamine metabolic process7.55E-03
103GO:0010020: chloroplast fission7.55E-03
104GO:0010207: photosystem II assembly7.55E-03
105GO:0010167: response to nitrate8.18E-03
106GO:0019853: L-ascorbic acid biosynthetic process8.18E-03
107GO:0046854: phosphatidylinositol phosphorylation8.18E-03
108GO:0045454: cell redox homeostasis8.52E-03
109GO:0010025: wax biosynthetic process8.82E-03
110GO:0007010: cytoskeleton organization9.48E-03
111GO:0009116: nucleoside metabolic process9.48E-03
112GO:0006418: tRNA aminoacylation for protein translation1.02E-02
113GO:0016114: terpenoid biosynthetic process1.09E-02
114GO:0051260: protein homooligomerization1.09E-02
115GO:0016226: iron-sulfur cluster assembly1.16E-02
116GO:0006412: translation1.17E-02
117GO:0009411: response to UV1.23E-02
118GO:0019722: calcium-mediated signaling1.31E-02
119GO:0010091: trichome branching1.31E-02
120GO:0042147: retrograde transport, endosome to Golgi1.38E-02
121GO:0042335: cuticle development1.46E-02
122GO:0008033: tRNA processing1.46E-02
123GO:0000413: protein peptidyl-prolyl isomerization1.46E-02
124GO:0009741: response to brassinosteroid1.54E-02
125GO:0009646: response to absence of light1.62E-02
126GO:0040008: regulation of growth1.66E-02
127GO:0006623: protein targeting to vacuole1.70E-02
128GO:0008654: phospholipid biosynthetic process1.70E-02
129GO:0006891: intra-Golgi vesicle-mediated transport1.79E-02
130GO:0009735: response to cytokinin2.05E-02
131GO:0009567: double fertilization forming a zygote and endosperm2.05E-02
132GO:0008380: RNA splicing2.07E-02
133GO:0071805: potassium ion transmembrane transport2.14E-02
134GO:0000910: cytokinesis2.23E-02
135GO:0010029: regulation of seed germination2.42E-02
136GO:0042128: nitrate assimilation2.51E-02
137GO:0006888: ER to Golgi vesicle-mediated transport2.61E-02
138GO:0016311: dephosphorylation2.71E-02
139GO:0009817: defense response to fungus, incompatible interaction2.81E-02
140GO:0048481: plant ovule development2.81E-02
141GO:0048767: root hair elongation2.91E-02
142GO:0009813: flavonoid biosynthetic process2.91E-02
143GO:0009407: toxin catabolic process3.01E-02
144GO:0048527: lateral root development3.11E-02
145GO:0010119: regulation of stomatal movement3.11E-02
146GO:0080167: response to karrikin3.33E-02
147GO:0006631: fatty acid metabolic process3.76E-02
148GO:0042542: response to hydrogen peroxide3.87E-02
149GO:0009636: response to toxic substance4.32E-02
150GO:0006855: drug transmembrane transport4.44E-02
151GO:0042538: hyperosmotic salinity response4.68E-02
152GO:0032259: methylation4.69E-02
153GO:0009585: red, far-red light phototransduction4.92E-02
RankGO TermAdjusted P value
1GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
2GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
3GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
4GO:0015269: calcium-activated potassium channel activity0.00E+00
5GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding0.00E+00
6GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
7GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
8GO:0045435: lycopene epsilon cyclase activity0.00E+00
9GO:0048307: ferredoxin-nitrite reductase activity0.00E+00
10GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity0.00E+00
11GO:0050421: nitrite reductase (NO-forming) activity0.00E+00
12GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
13GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity0.00E+00
14GO:0005048: signal sequence binding0.00E+00
15GO:0047889: ferredoxin-nitrate reductase activity0.00E+00
16GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
17GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
18GO:0051920: peroxiredoxin activity8.36E-05
19GO:0016209: antioxidant activity1.43E-04
20GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity1.82E-04
21GO:0004071: aspartate-ammonia ligase activity1.82E-04
22GO:0004853: uroporphyrinogen decarboxylase activity1.82E-04
23GO:0009374: biotin binding1.82E-04
24GO:0015088: copper uptake transmembrane transporter activity1.82E-04
25GO:0004830: tryptophan-tRNA ligase activity1.82E-04
26GO:0010347: L-galactose-1-phosphate phosphatase activity1.82E-04
27GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity1.82E-04
28GO:0030794: (S)-coclaurine-N-methyltransferase activity1.82E-04
29GO:0004425: indole-3-glycerol-phosphate synthase activity1.82E-04
30GO:0004560: alpha-L-fucosidase activity1.82E-04
31GO:0019843: rRNA binding2.94E-04
32GO:0008479: queuine tRNA-ribosyltransferase activity4.10E-04
33GO:0008934: inositol monophosphate 1-phosphatase activity4.10E-04
34GO:0052833: inositol monophosphate 4-phosphatase activity4.10E-04
35GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity4.10E-04
36GO:0004150: dihydroneopterin aldolase activity4.10E-04
37GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity4.10E-04
38GO:0102083: 7,8-dihydromonapterin aldolase activity4.10E-04
39GO:0052832: inositol monophosphate 3-phosphatase activity4.10E-04
40GO:0004148: dihydrolipoyl dehydrogenase activity6.69E-04
41GO:0005504: fatty acid binding6.69E-04
42GO:0070402: NADPH binding6.69E-04
43GO:0051536: iron-sulfur cluster binding7.17E-04
44GO:0035529: NADH pyrophosphatase activity9.55E-04
45GO:0016851: magnesium chelatase activity9.55E-04
46GO:0016149: translation release factor activity, codon specific9.55E-04
47GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity9.55E-04
48GO:0004550: nucleoside diphosphate kinase activity9.55E-04
49GO:0043023: ribosomal large subunit binding9.55E-04
50GO:0008097: 5S rRNA binding9.55E-04
51GO:0001872: (1->3)-beta-D-glucan binding9.55E-04
52GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity9.55E-04
53GO:0003727: single-stranded RNA binding1.11E-03
54GO:0045430: chalcone isomerase activity1.27E-03
55GO:0004659: prenyltransferase activity1.27E-03
56GO:0016279: protein-lysine N-methyltransferase activity1.27E-03
57GO:0004845: uracil phosphoribosyltransferase activity1.27E-03
58GO:0009922: fatty acid elongase activity1.61E-03
59GO:0004040: amidase activity1.61E-03
60GO:0030414: peptidase inhibitor activity1.61E-03
61GO:0003989: acetyl-CoA carboxylase activity1.61E-03
62GO:0042803: protein homodimerization activity1.85E-03
63GO:0016208: AMP binding1.98E-03
64GO:0016462: pyrophosphatase activity1.98E-03
65GO:0015271: outward rectifier potassium channel activity1.98E-03
66GO:0004605: phosphatidate cytidylyltransferase activity1.98E-03
67GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity2.38E-03
68GO:0004849: uridine kinase activity2.38E-03
69GO:0004124: cysteine synthase activity2.38E-03
70GO:0008312: 7S RNA binding3.24E-03
71GO:0004033: aldo-keto reductase (NADP) activity3.24E-03
72GO:0005267: potassium channel activity3.71E-03
73GO:0003747: translation release factor activity4.20E-03
74GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors4.20E-03
75GO:0005381: iron ion transmembrane transporter activity4.71E-03
76GO:0003735: structural constituent of ribosome4.79E-03
77GO:0003755: peptidyl-prolyl cis-trans isomerase activity6.08E-03
78GO:0004089: carbonate dehydratase activity6.94E-03
79GO:0031072: heat shock protein binding6.94E-03
80GO:0003690: double-stranded DNA binding7.26E-03
81GO:0005216: ion channel activity1.02E-02
82GO:0004176: ATP-dependent peptidase activity1.09E-02
83GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.29E-02
84GO:0004812: aminoacyl-tRNA ligase activity1.38E-02
85GO:0030170: pyridoxal phosphate binding1.39E-02
86GO:0003713: transcription coactivator activity1.54E-02
87GO:0050662: coenzyme binding1.62E-02
88GO:0019901: protein kinase binding1.70E-02
89GO:0008483: transaminase activity2.14E-02
90GO:0008237: metallopeptidase activity2.14E-02
91GO:0005200: structural constituent of cytoskeleton2.14E-02
92GO:0008168: methyltransferase activity2.59E-02
93GO:0030247: polysaccharide binding2.61E-02
94GO:0004601: peroxidase activity2.69E-02
95GO:0008236: serine-type peptidase activity2.71E-02
96GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity2.81E-02
97GO:0015238: drug transmembrane transporter activity2.91E-02
98GO:0016740: transferase activity2.95E-02
99GO:0004222: metalloendopeptidase activity3.01E-02
100GO:0003993: acid phosphatase activity3.43E-02
101GO:0000149: SNARE binding3.54E-02
102GO:0051539: 4 iron, 4 sulfur cluster binding3.65E-02
103GO:0052689: carboxylic ester hydrolase activity3.68E-02
104GO:0004364: glutathione transferase activity3.87E-02
105GO:0005484: SNAP receptor activity3.98E-02
106GO:0043621: protein self-association4.21E-02
107GO:0005525: GTP binding4.26E-02
108GO:0003924: GTPase activity4.89E-02
109GO:0005509: calcium ion binding4.97E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast4.01E-45
2GO:0009570: chloroplast stroma5.92E-25
3GO:0009941: chloroplast envelope2.15E-23
4GO:0009535: chloroplast thylakoid membrane6.81E-13
5GO:0009579: thylakoid5.10E-10
6GO:0009543: chloroplast thylakoid lumen8.04E-08
7GO:0009654: photosystem II oxygen evolving complex1.03E-06
8GO:0009536: plastid2.75E-06
9GO:0031969: chloroplast membrane2.93E-05
10GO:0031977: thylakoid lumen5.42E-05
11GO:0005840: ribosome7.28E-05
12GO:0019898: extrinsic component of membrane1.33E-04
13GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex1.82E-04
14GO:0009923: fatty acid elongase complex1.82E-04
15GO:0080085: signal recognition particle, chloroplast targeting4.10E-04
16GO:0000427: plastid-encoded plastid RNA polymerase complex4.10E-04
17GO:0009534: chloroplast thylakoid4.41E-04
18GO:0009508: plastid chromosome4.63E-04
19GO:0009509: chromoplast6.69E-04
20GO:0009317: acetyl-CoA carboxylase complex6.69E-04
21GO:0009526: plastid envelope1.27E-03
22GO:0031897: Tic complex1.27E-03
23GO:0009706: chloroplast inner membrane1.48E-03
24GO:0055035: plastid thylakoid membrane1.61E-03
25GO:0009295: nucleoid2.19E-03
26GO:0009533: chloroplast stromal thylakoid2.80E-03
27GO:0009707: chloroplast outer membrane3.20E-03
28GO:0012507: ER to Golgi transport vesicle membrane3.24E-03
29GO:0009539: photosystem II reaction center3.71E-03
30GO:0005786: signal recognition particle, endoplasmic reticulum targeting3.71E-03
31GO:0042651: thylakoid membrane1.02E-02
32GO:0048046: apoplast1.55E-02
33GO:0009504: cell plate1.70E-02
34GO:0005778: peroxisomal membrane2.14E-02
35GO:0046658: anchored component of plasma membrane2.30E-02
36GO:0015934: large ribosomal subunit3.11E-02
37GO:0031902: late endosome membrane3.76E-02
38GO:0031201: SNARE complex3.76E-02
39GO:0005856: cytoskeleton4.32E-02
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Gene type



Gene DE type