GO Enrichment Analysis of Co-expressed Genes with
AT2G29360
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 2 | GO:2000121: regulation of removal of superoxide radicals | 0.00E+00 |
| 3 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
| 4 | GO:0097164: ammonium ion metabolic process | 0.00E+00 |
| 5 | GO:0006223: uracil salvage | 0.00E+00 |
| 6 | GO:0090391: granum assembly | 2.15E-06 |
| 7 | GO:0015979: photosynthesis | 4.88E-06 |
| 8 | GO:0010196: nonphotochemical quenching | 4.66E-05 |
| 9 | GO:0010027: thylakoid membrane organization | 8.29E-05 |
| 10 | GO:0042371: vitamin K biosynthetic process | 1.04E-04 |
| 11 | GO:1902458: positive regulation of stomatal opening | 1.04E-04 |
| 12 | GO:0010207: photosystem II assembly | 2.43E-04 |
| 13 | GO:0010024: phytochromobilin biosynthetic process | 2.44E-04 |
| 14 | GO:0070981: L-asparagine biosynthetic process | 2.44E-04 |
| 15 | GO:0031648: protein destabilization | 2.44E-04 |
| 16 | GO:0080183: response to photooxidative stress | 2.44E-04 |
| 17 | GO:0006529: asparagine biosynthetic process | 2.44E-04 |
| 18 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 2.44E-04 |
| 19 | GO:0006568: tryptophan metabolic process | 2.44E-04 |
| 20 | GO:0009735: response to cytokinin | 2.85E-04 |
| 21 | GO:0006788: heme oxidation | 4.05E-04 |
| 22 | GO:0015714: phosphoenolpyruvate transport | 4.05E-04 |
| 23 | GO:0071492: cellular response to UV-A | 4.05E-04 |
| 24 | GO:0006760: folic acid-containing compound metabolic process | 4.05E-04 |
| 25 | GO:0042335: cuticle development | 6.23E-04 |
| 26 | GO:0030007: cellular potassium ion homeostasis | 7.73E-04 |
| 27 | GO:0015713: phosphoglycerate transport | 7.73E-04 |
| 28 | GO:0044206: UMP salvage | 7.73E-04 |
| 29 | GO:2000122: negative regulation of stomatal complex development | 7.73E-04 |
| 30 | GO:0046656: folic acid biosynthetic process | 7.73E-04 |
| 31 | GO:0006021: inositol biosynthetic process | 7.73E-04 |
| 32 | GO:0010037: response to carbon dioxide | 7.73E-04 |
| 33 | GO:0015976: carbon utilization | 7.73E-04 |
| 34 | GO:0071486: cellular response to high light intensity | 7.73E-04 |
| 35 | GO:0034052: positive regulation of plant-type hypersensitive response | 9.77E-04 |
| 36 | GO:0043097: pyrimidine nucleoside salvage | 9.77E-04 |
| 37 | GO:0010236: plastoquinone biosynthetic process | 9.77E-04 |
| 38 | GO:0045038: protein import into chloroplast thylakoid membrane | 9.77E-04 |
| 39 | GO:0031365: N-terminal protein amino acid modification | 9.77E-04 |
| 40 | GO:0006206: pyrimidine nucleobase metabolic process | 1.19E-03 |
| 41 | GO:0046855: inositol phosphate dephosphorylation | 1.19E-03 |
| 42 | GO:0010190: cytochrome b6f complex assembly | 1.19E-03 |
| 43 | GO:0009117: nucleotide metabolic process | 1.19E-03 |
| 44 | GO:0009627: systemic acquired resistance | 1.29E-03 |
| 45 | GO:0015995: chlorophyll biosynthetic process | 1.36E-03 |
| 46 | GO:0042372: phylloquinone biosynthetic process | 1.43E-03 |
| 47 | GO:0046654: tetrahydrofolate biosynthetic process | 1.43E-03 |
| 48 | GO:0010555: response to mannitol | 1.43E-03 |
| 49 | GO:0009772: photosynthetic electron transport in photosystem II | 1.67E-03 |
| 50 | GO:0010119: regulation of stomatal movement | 1.73E-03 |
| 51 | GO:0048564: photosystem I assembly | 1.93E-03 |
| 52 | GO:0009642: response to light intensity | 1.93E-03 |
| 53 | GO:0043068: positive regulation of programmed cell death | 1.93E-03 |
| 54 | GO:2000070: regulation of response to water deprivation | 1.93E-03 |
| 55 | GO:0009658: chloroplast organization | 1.94E-03 |
| 56 | GO:0042254: ribosome biogenesis | 1.99E-03 |
| 57 | GO:0015996: chlorophyll catabolic process | 2.21E-03 |
| 58 | GO:0007186: G-protein coupled receptor signaling pathway | 2.21E-03 |
| 59 | GO:0009657: plastid organization | 2.21E-03 |
| 60 | GO:0009245: lipid A biosynthetic process | 2.49E-03 |
| 61 | GO:0051865: protein autoubiquitination | 2.49E-03 |
| 62 | GO:0034765: regulation of ion transmembrane transport | 2.49E-03 |
| 63 | GO:0006783: heme biosynthetic process | 2.49E-03 |
| 64 | GO:0042538: hyperosmotic salinity response | 3.05E-03 |
| 65 | GO:0006782: protoporphyrinogen IX biosynthetic process | 3.10E-03 |
| 66 | GO:0045454: cell redox homeostasis | 3.20E-03 |
| 67 | GO:0043085: positive regulation of catalytic activity | 3.42E-03 |
| 68 | GO:0006790: sulfur compound metabolic process | 3.75E-03 |
| 69 | GO:0045037: protein import into chloroplast stroma | 3.75E-03 |
| 70 | GO:0006541: glutamine metabolic process | 4.44E-03 |
| 71 | GO:0010167: response to nitrate | 4.80E-03 |
| 72 | GO:0019853: L-ascorbic acid biosynthetic process | 4.80E-03 |
| 73 | GO:0046854: phosphatidylinositol phosphorylation | 4.80E-03 |
| 74 | GO:0019344: cysteine biosynthetic process | 5.56E-03 |
| 75 | GO:0009116: nucleoside metabolic process | 5.56E-03 |
| 76 | GO:0000027: ribosomal large subunit assembly | 5.56E-03 |
| 77 | GO:0007017: microtubule-based process | 5.95E-03 |
| 78 | GO:0061077: chaperone-mediated protein folding | 6.35E-03 |
| 79 | GO:0051260: protein homooligomerization | 6.35E-03 |
| 80 | GO:0009814: defense response, incompatible interaction | 6.76E-03 |
| 81 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 6.76E-03 |
| 82 | GO:0006412: translation | 6.84E-03 |
| 83 | GO:0019722: calcium-mediated signaling | 7.61E-03 |
| 84 | GO:0000413: protein peptidyl-prolyl isomerization | 8.49E-03 |
| 85 | GO:0006662: glycerol ether metabolic process | 8.95E-03 |
| 86 | GO:0010182: sugar mediated signaling pathway | 8.95E-03 |
| 87 | GO:0009646: response to absence of light | 9.42E-03 |
| 88 | GO:0010583: response to cyclopentenone | 1.09E-02 |
| 89 | GO:0032502: developmental process | 1.09E-02 |
| 90 | GO:1901657: glycosyl compound metabolic process | 1.14E-02 |
| 91 | GO:0010286: heat acclimation | 1.24E-02 |
| 92 | GO:0071805: potassium ion transmembrane transport | 1.24E-02 |
| 93 | GO:0007267: cell-cell signaling | 1.24E-02 |
| 94 | GO:0010029: regulation of seed germination | 1.40E-02 |
| 95 | GO:0042128: nitrate assimilation | 1.45E-02 |
| 96 | GO:0010411: xyloglucan metabolic process | 1.51E-02 |
| 97 | GO:0080167: response to karrikin | 1.54E-02 |
| 98 | GO:0034599: cellular response to oxidative stress | 1.98E-02 |
| 99 | GO:0030001: metal ion transport | 2.11E-02 |
| 100 | GO:0042546: cell wall biogenesis | 2.37E-02 |
| 101 | GO:0009644: response to high light intensity | 2.43E-02 |
| 102 | GO:0008643: carbohydrate transport | 2.43E-02 |
| 103 | GO:0009626: plant-type hypersensitive response | 3.35E-02 |
| 104 | GO:0009740: gibberellic acid mediated signaling pathway | 3.50E-02 |
| 105 | GO:0009742: brassinosteroid mediated signaling pathway | 3.81E-02 |
| 106 | GO:0009416: response to light stimulus | 4.03E-02 |
| 107 | GO:0042744: hydrogen peroxide catabolic process | 4.70E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0015269: calcium-activated potassium channel activity | 0.00E+00 |
| 2 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 3 | GO:0048307: ferredoxin-nitrite reductase activity | 0.00E+00 |
| 4 | GO:0050421: nitrite reductase (NO-forming) activity | 0.00E+00 |
| 5 | GO:0047889: ferredoxin-nitrate reductase activity | 0.00E+00 |
| 6 | GO:0030794: (S)-coclaurine-N-methyltransferase activity | 1.04E-04 |
| 7 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 1.04E-04 |
| 8 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 1.04E-04 |
| 9 | GO:0015121: phosphoenolpyruvate:phosphate antiporter activity | 1.04E-04 |
| 10 | GO:0004071: aspartate-ammonia ligase activity | 1.04E-04 |
| 11 | GO:0004853: uroporphyrinogen decarboxylase activity | 1.04E-04 |
| 12 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 1.04E-04 |
| 13 | GO:0102083: 7,8-dihydromonapterin aldolase activity | 2.44E-04 |
| 14 | GO:0052832: inositol monophosphate 3-phosphatase activity | 2.44E-04 |
| 15 | GO:0008934: inositol monophosphate 1-phosphatase activity | 2.44E-04 |
| 16 | GO:0052833: inositol monophosphate 4-phosphatase activity | 2.44E-04 |
| 17 | GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity | 2.44E-04 |
| 18 | GO:0016630: protochlorophyllide reductase activity | 2.44E-04 |
| 19 | GO:0004150: dihydroneopterin aldolase activity | 2.44E-04 |
| 20 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.02E-04 |
| 21 | GO:0005528: FK506 binding | 3.40E-04 |
| 22 | GO:0035529: NADH pyrophosphatase activity | 5.82E-04 |
| 23 | GO:0019843: rRNA binding | 7.57E-04 |
| 24 | GO:0004392: heme oxygenase (decyclizing) activity | 7.73E-04 |
| 25 | GO:0015120: phosphoglycerate transmembrane transporter activity | 7.73E-04 |
| 26 | GO:0004659: prenyltransferase activity | 7.73E-04 |
| 27 | GO:0004845: uracil phosphoribosyltransferase activity | 7.73E-04 |
| 28 | GO:0004040: amidase activity | 9.77E-04 |
| 29 | GO:0003959: NADPH dehydrogenase activity | 9.77E-04 |
| 30 | GO:0031177: phosphopantetheine binding | 1.19E-03 |
| 31 | GO:0016462: pyrophosphatase activity | 1.19E-03 |
| 32 | GO:0015271: outward rectifier potassium channel activity | 1.19E-03 |
| 33 | GO:0051920: peroxiredoxin activity | 1.43E-03 |
| 34 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 1.43E-03 |
| 35 | GO:0004849: uridine kinase activity | 1.43E-03 |
| 36 | GO:0000035: acyl binding | 1.43E-03 |
| 37 | GO:0008235: metalloexopeptidase activity | 1.67E-03 |
| 38 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 1.93E-03 |
| 39 | GO:0016209: antioxidant activity | 1.93E-03 |
| 40 | GO:0005267: potassium channel activity | 2.21E-03 |
| 41 | GO:0008047: enzyme activator activity | 3.10E-03 |
| 42 | GO:0004177: aminopeptidase activity | 3.42E-03 |
| 43 | GO:0003735: structural constituent of ribosome | 3.93E-03 |
| 44 | GO:0004089: carbonate dehydratase activity | 4.09E-03 |
| 45 | GO:0004650: polygalacturonase activity | 4.24E-03 |
| 46 | GO:0051119: sugar transmembrane transporter activity | 4.80E-03 |
| 47 | GO:0005216: ion channel activity | 5.95E-03 |
| 48 | GO:0022891: substrate-specific transmembrane transporter activity | 7.18E-03 |
| 49 | GO:0047134: protein-disulfide reductase activity | 8.05E-03 |
| 50 | GO:0004791: thioredoxin-disulfide reductase activity | 9.42E-03 |
| 51 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 1.04E-02 |
| 52 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.14E-02 |
| 53 | GO:0004601: peroxidase activity | 1.24E-02 |
| 54 | GO:0005200: structural constituent of cytoskeleton | 1.24E-02 |
| 55 | GO:0016168: chlorophyll binding | 1.40E-02 |
| 56 | GO:0102483: scopolin beta-glucosidase activity | 1.51E-02 |
| 57 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 1.51E-02 |
| 58 | GO:0005509: calcium ion binding | 1.91E-02 |
| 59 | GO:0008422: beta-glucosidase activity | 2.04E-02 |
| 60 | GO:0051539: 4 iron, 4 sulfur cluster binding | 2.11E-02 |
| 61 | GO:0043621: protein self-association | 2.43E-02 |
| 62 | GO:0016491: oxidoreductase activity | 2.98E-02 |
| 63 | GO:0022857: transmembrane transporter activity | 3.50E-02 |
| 64 | GO:0015035: protein disulfide oxidoreductase activity | 3.73E-02 |
| 65 | GO:0000166: nucleotide binding | 4.03E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009515: granal stacked thylakoid | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 7.54E-20 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 7.51E-16 |
| 4 | GO:0009570: chloroplast stroma | 5.89E-11 |
| 5 | GO:0009579: thylakoid | 1.17E-10 |
| 6 | GO:0009543: chloroplast thylakoid lumen | 1.26E-10 |
| 7 | GO:0031977: thylakoid lumen | 1.38E-10 |
| 8 | GO:0009534: chloroplast thylakoid | 4.28E-08 |
| 9 | GO:0009941: chloroplast envelope | 6.39E-08 |
| 10 | GO:0009654: photosystem II oxygen evolving complex | 1.26E-05 |
| 11 | GO:0019898: extrinsic component of membrane | 4.23E-05 |
| 12 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 1.04E-04 |
| 13 | GO:0048046: apoplast | 2.68E-04 |
| 14 | GO:0005840: ribosome | 2.81E-04 |
| 15 | GO:0009528: plastid inner membrane | 4.05E-04 |
| 16 | GO:0009527: plastid outer membrane | 7.73E-04 |
| 17 | GO:0009533: chloroplast stromal thylakoid | 1.67E-03 |
| 18 | GO:0009505: plant-type cell wall | 1.74E-03 |
| 19 | GO:0045298: tubulin complex | 2.49E-03 |
| 20 | GO:0031969: chloroplast membrane | 2.55E-03 |
| 21 | GO:0000311: plastid large ribosomal subunit | 3.75E-03 |
| 22 | GO:0030095: chloroplast photosystem II | 4.44E-03 |
| 23 | GO:0009532: plastid stroma | 6.35E-03 |
| 24 | GO:0009523: photosystem II | 9.90E-03 |
| 25 | GO:0005576: extracellular region | 1.05E-02 |
| 26 | GO:0046658: anchored component of plasma membrane | 1.06E-02 |
| 27 | GO:0010319: stromule | 1.24E-02 |
| 28 | GO:0005618: cell wall | 1.30E-02 |
| 29 | GO:0031225: anchored component of membrane | 1.52E-02 |
| 30 | GO:0009707: chloroplast outer membrane | 1.62E-02 |
| 31 | GO:0015934: large ribosomal subunit | 1.80E-02 |
| 32 | GO:0022626: cytosolic ribosome | 3.86E-02 |
| 33 | GO:0010287: plastoglobule | 4.13E-02 |