co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G28950

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
2	GO:2000121: regulation of removal of superoxide radicals	0.00E+00
3	GO:0006223: uracil salvage	0.00E+00
4	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
5	GO:0042493: response to drug	0.00E+00
6	GO:0006399: tRNA metabolic process	0.00E+00
7	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
8	GO:0015979: photosynthesis	7.91E-13
9	GO:0015995: chlorophyll biosynthetic process	4.87E-12
10	GO:0009735: response to cytokinin	1.46E-09
11	GO:0042254: ribosome biogenesis	1.14E-08
12	GO:0006412: translation	5.31E-07
13	GO:0010207: photosystem II assembly	2.63E-06
14	GO:0010027: thylakoid membrane organization	4.33E-06
15	GO:0090391: granum assembly	1.79E-05
16	GO:0032543: mitochondrial translation	1.11E-04
17	GO:0042372: phylloquinone biosynthetic process	2.18E-04
18	GO:0010196: nonphotochemical quenching	2.83E-04
19	GO:0009772: photosynthetic electron transport in photosystem II	2.83E-04
20	GO:0000413: protein peptidyl-prolyl isomerization	3.28E-04
21	GO:0046520: sphingoid biosynthetic process	3.34E-04
22	GO:1904966: positive regulation of vitamin E biosynthetic process	3.34E-04
23	GO:1904964: positive regulation of phytol biosynthetic process	3.34E-04
24	GO:0042371: vitamin K biosynthetic process	3.34E-04
25	GO:0006106: fumarate metabolic process	3.34E-04
26	GO:1902458: positive regulation of stomatal opening	3.34E-04
27	GO:0034337: RNA folding	3.34E-04
28	GO:0071588: hydrogen peroxide mediated signaling pathway	3.34E-04
29	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	3.34E-04
30	GO:0032544: plastid translation	4.36E-04
31	GO:0010206: photosystem II repair	5.24E-04
32	GO:0006783: heme biosynthetic process	5.24E-04
33	GO:0006782: protoporphyrinogen IX biosynthetic process	7.22E-04
34	GO:1902326: positive regulation of chlorophyll biosynthetic process	7.29E-04
35	GO:0031648: protein destabilization	7.29E-04
36	GO:1903426: regulation of reactive oxygen species biosynthetic process	7.29E-04
37	GO:0006521: regulation of cellular amino acid metabolic process	7.29E-04
38	GO:0009658: chloroplast organization	8.00E-04
39	GO:0009773: photosynthetic electron transport in photosystem I	8.32E-04
40	GO:0010411: xyloglucan metabolic process	9.38E-04
41	GO:0015840: urea transport	1.18E-03
42	GO:0045493: xylan catabolic process	1.18E-03
43	GO:0055114: oxidation-reduction process	1.33E-03
44	GO:0006833: water transport	1.50E-03
45	GO:0080170: hydrogen peroxide transmembrane transport	1.70E-03
46	GO:0009650: UV protection	1.70E-03
47	GO:0009647: skotomorphogenesis	1.70E-03
48	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.70E-03
49	GO:0010731: protein glutathionylation	1.70E-03
50	GO:0006424: glutamyl-tRNA aminoacylation	1.70E-03
51	GO:0050482: arachidonic acid secretion	1.70E-03
52	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.70E-03
53	GO:2001141: regulation of RNA biosynthetic process	1.70E-03
54	GO:0051513: regulation of monopolar cell growth	1.70E-03
55	GO:0071484: cellular response to light intensity	1.70E-03
56	GO:0007017: microtubule-based process	1.84E-03
57	GO:0006869: lipid transport	1.88E-03
58	GO:2000122: negative regulation of stomatal complex development	2.28E-03
59	GO:0030104: water homeostasis	2.28E-03
60	GO:0044206: UMP salvage	2.28E-03
61	GO:0006021: inositol biosynthetic process	2.28E-03
62	GO:0010037: response to carbon dioxide	2.28E-03
63	GO:0010109: regulation of photosynthesis	2.28E-03
64	GO:0015976: carbon utilization	2.28E-03
65	GO:0009765: photosynthesis, light harvesting	2.28E-03
66	GO:0006085: acetyl-CoA biosynthetic process	2.28E-03
67	GO:0006183: GTP biosynthetic process	2.28E-03
68	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.41E-03
69	GO:0034052: positive regulation of plant-type hypersensitive response	2.91E-03
70	GO:0016120: carotene biosynthetic process	2.91E-03
71	GO:0043097: pyrimidine nucleoside salvage	2.91E-03
72	GO:0010236: plastoquinone biosynthetic process	2.91E-03
73	GO:0045038: protein import into chloroplast thylakoid membrane	2.91E-03
74	GO:0031365: N-terminal protein amino acid modification	2.91E-03
75	GO:0016123: xanthophyll biosynthetic process	2.91E-03
76	GO:0042335: cuticle development	3.06E-03
77	GO:0034220: ion transmembrane transport	3.06E-03
78	GO:0006206: pyrimidine nucleobase metabolic process	3.60E-03
79	GO:0046855: inositol phosphate dephosphorylation	3.60E-03
80	GO:0042549: photosystem II stabilization	3.60E-03
81	GO:0000302: response to reactive oxygen species	4.08E-03
82	GO:0009612: response to mechanical stimulus	4.33E-03
83	GO:1901259: chloroplast rRNA processing	4.33E-03
84	GO:0010189: vitamin E biosynthetic process	4.33E-03
85	GO:0009854: oxidative photosynthetic carbon pathway	4.33E-03
86	GO:0010019: chloroplast-nucleus signaling pathway	4.33E-03
87	GO:0010555: response to mannitol	4.33E-03
88	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	4.33E-03
89	GO:0010583: response to cyclopentenone	4.35E-03
90	GO:0009828: plant-type cell wall loosening	4.94E-03
91	GO:0080167: response to karrikin	5.03E-03
92	GO:0009645: response to low light intensity stimulus	5.11E-03
93	GO:0009819: drought recovery	5.94E-03
94	GO:0009642: response to light intensity	5.94E-03
95	GO:0043068: positive regulation of programmed cell death	5.94E-03
96	GO:2000070: regulation of response to water deprivation	5.94E-03
97	GO:0006644: phospholipid metabolic process	5.94E-03
98	GO:0009627: systemic acquired resistance	6.58E-03
99	GO:0045454: cell redox homeostasis	6.61E-03
100	GO:0007186: G-protein coupled receptor signaling pathway	6.81E-03
101	GO:0009932: cell tip growth	6.81E-03
102	GO:0071482: cellular response to light stimulus	6.81E-03
103	GO:0015996: chlorophyll catabolic process	6.81E-03
104	GO:0042744: hydrogen peroxide catabolic process	7.12E-03
105	GO:0042742: defense response to bacterium	7.13E-03
106	GO:0071555: cell wall organization	7.13E-03
107	GO:0018298: protein-chromophore linkage	7.70E-03
108	GO:0051865: protein autoubiquitination	7.73E-03
109	GO:0009245: lipid A biosynthetic process	7.73E-03
110	GO:0006633: fatty acid biosynthetic process	8.07E-03
111	GO:0016042: lipid catabolic process	8.70E-03
112	GO:0009631: cold acclimation	8.91E-03
113	GO:0045490: pectin catabolic process	9.10E-03
114	GO:0009637: response to blue light	9.77E-03
115	GO:0034599: cellular response to oxidative stress	1.02E-02
116	GO:0006415: translational termination	1.07E-02
117	GO:0006352: DNA-templated transcription, initiation	1.07E-02
118	GO:0018119: peptidyl-cysteine S-nitrosylation	1.07E-02
119	GO:0010015: root morphogenesis	1.07E-02
120	GO:0030001: metal ion transport	1.12E-02
121	GO:0016024: CDP-diacylglycerol biosynthetic process	1.18E-02
122	GO:0045037: protein import into chloroplast stroma	1.18E-02
123	GO:0006790: sulfur compound metabolic process	1.18E-02
124	GO:0009640: photomorphogenesis	1.26E-02
125	GO:0010114: response to red light	1.26E-02
126	GO:0006108: malate metabolic process	1.29E-02
127	GO:0006006: glucose metabolic process	1.29E-02
128	GO:0009725: response to hormone	1.29E-02
129	GO:0042546: cell wall biogenesis	1.31E-02
130	GO:0019253: reductive pentose-phosphate cycle	1.41E-02
131	GO:0010143: cutin biosynthetic process	1.41E-02
132	GO:0009826: unidimensional cell growth	1.51E-02
133	GO:0019853: L-ascorbic acid biosynthetic process	1.53E-02
134	GO:0046854: phosphatidylinositol phosphorylation	1.53E-02
135	GO:0009664: plant-type cell wall organization	1.59E-02
136	GO:0005975: carbohydrate metabolic process	1.60E-02
137	GO:0019762: glucosinolate catabolic process	1.65E-02
138	GO:0000027: ribosomal large subunit assembly	1.77E-02
139	GO:0005992: trehalose biosynthetic process	1.77E-02
140	GO:0019344: cysteine biosynthetic process	1.77E-02
141	GO:0009116: nucleoside metabolic process	1.77E-02
142	GO:0009768: photosynthesis, light harvesting in photosystem I	1.90E-02
143	GO:0048511: rhythmic process	2.03E-02
144	GO:0061077: chaperone-mediated protein folding	2.03E-02
145	GO:0009814: defense response, incompatible interaction	2.17E-02
146	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.17E-02
147	GO:0009411: response to UV	2.31E-02
148	GO:0006012: galactose metabolic process	2.31E-02
149	GO:0019722: calcium-mediated signaling	2.45E-02
150	GO:0016117: carotenoid biosynthetic process	2.60E-02
151	GO:0080022: primary root development	2.74E-02
152	GO:0010182: sugar mediated signaling pathway	2.89E-02
153	GO:0015986: ATP synthesis coupled proton transport	3.05E-02
154	GO:0042752: regulation of circadian rhythm	3.05E-02
155	GO:0006457: protein folding	3.15E-02
156	GO:0002229: defense response to oomycetes	3.36E-02
157	GO:0032502: developmental process	3.52E-02
158	GO:0009409: response to cold	3.54E-02
159	GO:1901657: glycosyl compound metabolic process	3.69E-02
160	GO:0040008: regulation of growth	4.01E-02
161	GO:0007267: cell-cell signaling	4.02E-02
162	GO:0042128: nitrate assimilation	4.72E-02

Rank	GO Term	Adjusted P value
1	GO:0016631: enoyl-[acyl-carrier-protein] reductase activity	0.00E+00
2	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
3	GO:0008887: glycerate kinase activity	0.00E+00
4	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
5	GO:0045550: geranylgeranyl reductase activity	0.00E+00
6	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
7	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
8	GO:0004853: uroporphyrinogen decarboxylase activity	0.00E+00
9	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
10	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
11	GO:0019146: arabinose-5-phosphate isomerase activity	0.00E+00
12	GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity	0.00E+00
13	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
14	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
15	GO:0019843: rRNA binding	3.36E-13
16	GO:0003735: structural constituent of ribosome	3.28E-09
17	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.79E-06
18	GO:0051920: peroxiredoxin activity	4.29E-06
19	GO:0016630: protochlorophyllide reductase activity	5.06E-06
20	GO:0016209: antioxidant activity	1.04E-05
21	GO:0016851: magnesium chelatase activity	3.96E-05
22	GO:0005528: FK506 binding	1.38E-04
23	GO:0004130: cytochrome-c peroxidase activity	1.60E-04
24	GO:0009374: biotin binding	3.34E-04
25	GO:0015200: methylammonium transmembrane transporter activity	3.34E-04
26	GO:0010347: L-galactose-1-phosphate phosphatase activity	3.34E-04
27	GO:0004333: fumarate hydratase activity	3.34E-04
28	GO:0000170: sphingosine hydroxylase activity	3.34E-04
29	GO:0042284: sphingolipid delta-4 desaturase activity	7.29E-04
30	GO:0008934: inositol monophosphate 1-phosphatase activity	7.29E-04
31	GO:0052833: inositol monophosphate 4-phosphatase activity	7.29E-04
32	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	7.29E-04
33	GO:0008967: phosphoglycolate phosphatase activity	7.29E-04
34	GO:0003938: IMP dehydrogenase activity	7.29E-04
35	GO:0052832: inositol monophosphate 3-phosphatase activity	7.29E-04
36	GO:0015250: water channel activity	7.65E-04
37	GO:0004601: peroxidase activity	8.00E-04
38	GO:0016168: chlorophyll binding	8.20E-04
39	GO:0008289: lipid binding	1.09E-03
40	GO:0004148: dihydrolipoyl dehydrogenase activity	1.18E-03
41	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.18E-03
42	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.18E-03
43	GO:0010277: chlorophyllide a oxygenase [overall] activity	1.18E-03
44	GO:0070330: aromatase activity	1.18E-03
45	GO:0016149: translation release factor activity, codon specific	1.70E-03
46	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.70E-03
47	GO:0003878: ATP citrate synthase activity	1.70E-03
48	GO:1990137: plant seed peroxidase activity	2.28E-03
49	GO:0009044: xylan 1,4-beta-xylosidase activity	2.28E-03
50	GO:0043495: protein anchor	2.28E-03
51	GO:0046556: alpha-L-arabinofuranosidase activity	2.28E-03
52	GO:0015204: urea transmembrane transporter activity	2.28E-03
53	GO:0004659: prenyltransferase activity	2.28E-03
54	GO:0001053: plastid sigma factor activity	2.28E-03
55	GO:0004845: uracil phosphoribosyltransferase activity	2.28E-03
56	GO:0016987: sigma factor activity	2.28E-03
57	GO:0030570: pectate lyase activity	2.41E-03
58	GO:0003959: NADPH dehydrogenase activity	2.91E-03
59	GO:0004623: phospholipase A2 activity	2.91E-03
60	GO:0004040: amidase activity	2.91E-03
61	GO:0018685: alkane 1-monooxygenase activity	2.91E-03
62	GO:0003989: acetyl-CoA carboxylase activity	2.91E-03
63	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.07E-03
64	GO:0031177: phosphopantetheine binding	3.60E-03
65	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	3.60E-03
66	GO:0016208: AMP binding	3.60E-03
67	GO:0016688: L-ascorbate peroxidase activity	3.60E-03
68	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	3.60E-03
69	GO:0008519: ammonium transmembrane transporter activity	3.60E-03
70	GO:0016788: hydrolase activity, acting on ester bonds	3.73E-03
71	GO:0004650: polygalacturonase activity	4.04E-03
72	GO:0016762: xyloglucan:xyloglucosyl transferase activity	4.08E-03
73	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	4.33E-03
74	GO:0004849: uridine kinase activity	4.33E-03
75	GO:0000035: acyl binding	4.33E-03
76	GO:0019899: enzyme binding	5.11E-03
77	GO:0008235: metalloexopeptidase activity	5.11E-03
78	GO:0016722: oxidoreductase activity, oxidizing metal ions	5.25E-03
79	GO:0005200: structural constituent of cytoskeleton	5.25E-03
80	GO:0052689: carboxylic ester hydrolase activity	5.85E-03
81	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	5.94E-03
82	GO:0004034: aldose 1-epimerase activity	5.94E-03
83	GO:0005509: calcium ion binding	6.09E-03
84	GO:0016798: hydrolase activity, acting on glycosyl bonds	6.94E-03
85	GO:0102483: scopolin beta-glucosidase activity	6.94E-03
86	GO:0003747: translation release factor activity	7.73E-03
87	GO:0004805: trehalose-phosphatase activity	9.69E-03
88	GO:0003993: acid phosphatase activity	1.02E-02
89	GO:0008422: beta-glucosidase activity	1.07E-02
90	GO:0004177: aminopeptidase activity	1.07E-02
91	GO:0004364: glutathione transferase activity	1.21E-02
92	GO:0004089: carbonate dehydratase activity	1.29E-02
93	GO:0031072: heat shock protein binding	1.29E-02
94	GO:0051537: 2 iron, 2 sulfur cluster binding	1.37E-02
95	GO:0031409: pigment binding	1.65E-02
96	GO:0022891: substrate-specific transmembrane transporter activity	2.31E-02
97	GO:0003756: protein disulfide isomerase activity	2.45E-02
98	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.89E-02
99	GO:0016853: isomerase activity	3.05E-02
100	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.13E-02
101	GO:0019901: protein kinase binding	3.20E-02
102	GO:0016829: lyase activity	3.30E-02
103	GO:0016491: oxidoreductase activity	3.38E-02
104	GO:0005507: copper ion binding	3.62E-02
105	GO:0009055: electron carrier activity	3.70E-02
106	GO:0016791: phosphatase activity	3.85E-02
107	GO:0016597: amino acid binding	4.19E-02

Rank	GO Term	Adjusted P value
1	GO:0005835: fatty acid synthase complex	0.00E+00
2	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
3	GO:0009515: granal stacked thylakoid	0.00E+00
4	GO:0044391: ribosomal subunit	0.00E+00
5	GO:0009507: chloroplast	3.97E-47
6	GO:0009570: chloroplast stroma	1.26E-31
7	GO:0009941: chloroplast envelope	1.23E-28
8	GO:0009535: chloroplast thylakoid membrane	3.55E-28
9	GO:0009579: thylakoid	9.87E-25
10	GO:0009534: chloroplast thylakoid	1.12E-24
11	GO:0009543: chloroplast thylakoid lumen	5.11E-21
12	GO:0031977: thylakoid lumen	2.45E-19
13	GO:0005840: ribosome	2.78E-10
14	GO:0048046: apoplast	6.17E-09
15	GO:0009505: plant-type cell wall	7.39E-08
16	GO:0005618: cell wall	7.47E-08
17	GO:0009654: photosystem II oxygen evolving complex	6.97E-06
18	GO:0016020: membrane	9.82E-06
19	GO:0005576: extracellular region	1.33E-05
20	GO:0031225: anchored component of membrane	1.67E-05
21	GO:0010007: magnesium chelatase complex	1.79E-05
22	GO:0019898: extrinsic component of membrane	3.31E-05
23	GO:0010319: stromule	6.23E-05
24	GO:0030095: chloroplast photosystem II	8.43E-05
25	GO:0015935: small ribosomal subunit	1.83E-04
26	GO:0042807: central vacuole	2.83E-04
27	GO:0045239: tricarboxylic acid cycle enzyme complex	3.34E-04
28	GO:0043674: columella	3.34E-04
29	GO:0045298: tubulin complex	5.24E-04
30	GO:0046658: anchored component of plasma membrane	6.06E-04
31	GO:0010287: plastoglobule	1.05E-03
32	GO:0031969: chloroplast membrane	1.16E-03
33	GO:0009317: acetyl-CoA carboxylase complex	1.18E-03
34	GO:0009528: plastid inner membrane	1.18E-03
35	GO:0009346: citrate lyase complex	1.70E-03
36	GO:0042651: thylakoid membrane	1.84E-03
37	GO:0009527: plastid outer membrane	2.28E-03
38	GO:0009522: photosystem I	3.55E-03
39	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	3.60E-03
40	GO:0009533: chloroplast stromal thylakoid	5.11E-03
41	GO:0009538: photosystem I reaction center	5.94E-03
42	GO:0005811: lipid particle	6.81E-03
43	GO:0000326: protein storage vacuole	6.81E-03
44	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	7.73E-03
45	GO:0015934: large ribosomal subunit	8.91E-03
46	GO:0000311: plastid large ribosomal subunit	1.18E-02
47	GO:0032040: small-subunit processome	1.18E-02
48	GO:0030076: light-harvesting complex	1.53E-02
49	GO:0009506: plasmodesma	1.78E-02
50	GO:0009532: plastid stroma	2.03E-02
51	GO:0031410: cytoplasmic vesicle	2.17E-02
52	GO:0009706: chloroplast inner membrane	2.43E-02
53	GO:0009536: plastid	3.01E-02
54	GO:0009523: photosystem II	3.20E-02
55	GO:0005778: peroxisomal membrane	4.02E-02
56	GO:0009705: plant-type vacuole membrane	4.19E-02
57	GO:0005887: integral component of plasma membrane	4.93E-02