co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G28470

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	0.00E+00
2	GO:0007638: mechanosensory behavior	0.00E+00
3	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
4	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
5	GO:0046322: negative regulation of fatty acid oxidation	0.00E+00
6	GO:0006114: glycerol biosynthetic process	0.00E+00
7	GO:0042493: response to drug	0.00E+00
8	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
9	GO:0010306: rhamnogalacturonan II biosynthetic process	2.94E-05
10	GO:0010021: amylopectin biosynthetic process	5.29E-05
11	GO:0016998: cell wall macromolecule catabolic process	1.29E-04
12	GO:0060627: regulation of vesicle-mediated transport	2.82E-04
13	GO:0010362: negative regulation of anion channel activity by blue light	2.82E-04
14	GO:0006176: dATP biosynthetic process from ADP	2.82E-04
15	GO:0046467: membrane lipid biosynthetic process	2.82E-04
16	GO:0010480: microsporocyte differentiation	2.82E-04
17	GO:0071461: cellular response to redox state	2.82E-04
18	GO:0019252: starch biosynthetic process	3.16E-04
19	GO:0016042: lipid catabolic process	3.17E-04
20	GO:0071482: cellular response to light stimulus	3.40E-04
21	GO:0071555: cell wall organization	3.80E-04
22	GO:0010289: homogalacturonan biosynthetic process	6.19E-04
23	GO:0010198: synergid death	6.19E-04
24	GO:0080005: photosystem stoichiometry adjustment	6.19E-04
25	GO:0071457: cellular response to ozone	6.19E-04
26	GO:0045717: negative regulation of fatty acid biosynthetic process	6.19E-04
27	GO:0010411: xyloglucan metabolic process	6.87E-04
28	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	7.96E-04
29	GO:0010020: chloroplast fission	9.50E-04
30	GO:0090506: axillary shoot meristem initiation	1.00E-03
31	GO:0006518: peptide metabolic process	1.00E-03
32	GO:1901562: response to paraquat	1.00E-03
33	GO:0005977: glycogen metabolic process	1.00E-03
34	GO:0016051: carbohydrate biosynthetic process	1.05E-03
35	GO:0007231: osmosensory signaling pathway	1.44E-03
36	GO:0071484: cellular response to light intensity	1.44E-03
37	GO:0051639: actin filament network formation	1.44E-03
38	GO:0009152: purine ribonucleotide biosynthetic process	1.44E-03
39	GO:0046653: tetrahydrofolate metabolic process	1.44E-03
40	GO:0019048: modulation by virus of host morphology or physiology	1.44E-03
41	GO:0009650: UV protection	1.44E-03
42	GO:0031048: chromatin silencing by small RNA	1.44E-03
43	GO:0007017: microtubule-based process	1.44E-03
44	GO:0043572: plastid fission	1.44E-03
45	GO:2001141: regulation of RNA biosynthetic process	1.44E-03
46	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.44E-03
47	GO:0010371: regulation of gibberellin biosynthetic process	1.44E-03
48	GO:0042546: cell wall biogenesis	1.51E-03
49	GO:0030245: cellulose catabolic process	1.72E-03
50	GO:0071486: cellular response to high light intensity	1.92E-03
51	GO:0051764: actin crosslink formation	1.92E-03
52	GO:0015846: polyamine transport	1.92E-03
53	GO:0033500: carbohydrate homeostasis	1.92E-03
54	GO:0006552: leucine catabolic process	1.92E-03
55	GO:0031122: cytoplasmic microtubule organization	1.92E-03
56	GO:0051567: histone H3-K9 methylation	1.92E-03
57	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	1.92E-03
58	GO:0009902: chloroplast relocation	1.92E-03
59	GO:0071493: cellular response to UV-B	2.46E-03
60	GO:0000304: response to singlet oxygen	2.46E-03
61	GO:0045487: gibberellin catabolic process	2.46E-03
62	GO:0048868: pollen tube development	2.58E-03
63	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.03E-03
64	GO:0006655: phosphatidylglycerol biosynthetic process	3.03E-03
65	GO:0018258: protein O-linked glycosylation via hydroxyproline	3.03E-03
66	GO:0006574: valine catabolic process	3.03E-03
67	GO:0016458: gene silencing	3.03E-03
68	GO:0006014: D-ribose metabolic process	3.03E-03
69	GO:0010405: arabinogalactan protein metabolic process	3.03E-03
70	GO:0010304: PSII associated light-harvesting complex II catabolic process	3.03E-03
71	GO:0071554: cell wall organization or biogenesis	3.18E-03
72	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	3.65E-03
73	GO:0010067: procambium histogenesis	3.65E-03
74	GO:0009082: branched-chain amino acid biosynthetic process	3.65E-03
75	GO:0009942: longitudinal axis specification	3.65E-03
76	GO:0006955: immune response	4.30E-03
77	GO:0009395: phospholipid catabolic process	4.30E-03
78	GO:0048437: floral organ development	4.30E-03
79	GO:0010027: thylakoid membrane organization	4.59E-03
80	GO:0016559: peroxisome fission	4.99E-03
81	GO:0007155: cell adhesion	4.99E-03
82	GO:0009704: de-etiolation	4.99E-03
83	GO:0015996: chlorophyll catabolic process	5.72E-03
84	GO:0019430: removal of superoxide radicals	5.72E-03
85	GO:0009657: plastid organization	5.72E-03
86	GO:0007389: pattern specification process	5.72E-03
87	GO:0006754: ATP biosynthetic process	6.48E-03
88	GO:0007623: circadian rhythm	6.60E-03
89	GO:0009638: phototropism	7.28E-03
90	GO:0006949: syncytium formation	8.11E-03
91	GO:0019538: protein metabolic process	8.11E-03
92	GO:0030422: production of siRNA involved in RNA interference	8.11E-03
93	GO:0046856: phosphatidylinositol dephosphorylation	8.97E-03
94	GO:0006816: calcium ion transport	8.97E-03
95	GO:0006415: translational termination	8.97E-03
96	GO:1903507: negative regulation of nucleic acid-templated transcription	8.97E-03
97	GO:0006352: DNA-templated transcription, initiation	8.97E-03
98	GO:0048229: gametophyte development	8.97E-03
99	GO:0005975: carbohydrate metabolic process	9.80E-03
100	GO:0006820: anion transport	9.88E-03
101	GO:0016024: CDP-diacylglycerol biosynthetic process	9.88E-03
102	GO:0010102: lateral root morphogenesis	1.08E-02
103	GO:0010075: regulation of meristem growth	1.08E-02
104	GO:0009658: chloroplast organization	1.15E-02
105	GO:0009934: regulation of meristem structural organization	1.18E-02
106	GO:0010223: secondary shoot formation	1.18E-02
107	GO:0071732: cellular response to nitric oxide	1.28E-02
108	GO:0070588: calcium ion transmembrane transport	1.28E-02
109	GO:0006417: regulation of translation	1.47E-02
110	GO:0051017: actin filament bundle assembly	1.48E-02
111	GO:0008299: isoprenoid biosynthetic process	1.59E-02
112	GO:0010431: seed maturation	1.70E-02
113	GO:0006306: DNA methylation	1.70E-02
114	GO:0031408: oxylipin biosynthetic process	1.70E-02
115	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.81E-02
116	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.93E-02
117	GO:0009294: DNA mediated transformation	1.93E-02
118	GO:0009411: response to UV	1.93E-02
119	GO:0071369: cellular response to ethylene stimulus	1.93E-02
120	GO:0001944: vasculature development	1.93E-02
121	GO:0019722: calcium-mediated signaling	2.05E-02
122	GO:0009306: protein secretion	2.05E-02
123	GO:0010089: xylem development	2.05E-02
124	GO:0016117: carotenoid biosynthetic process	2.17E-02
125	GO:0010118: stomatal movement	2.29E-02
126	GO:0048653: anther development	2.29E-02
127	GO:0000413: protein peptidyl-prolyl isomerization	2.29E-02
128	GO:0010087: phloem or xylem histogenesis	2.29E-02
129	GO:0071472: cellular response to salt stress	2.42E-02
130	GO:0006342: chromatin silencing	2.42E-02
131	GO:0006629: lipid metabolic process	2.48E-02
132	GO:0007264: small GTPase mediated signal transduction	2.94E-02
133	GO:0010583: response to cyclopentenone	2.94E-02
134	GO:0071281: cellular response to iron ion	3.08E-02
135	GO:0010090: trichome morphogenesis	3.08E-02
136	GO:1901657: glycosyl compound metabolic process	3.08E-02
137	GO:0016125: sterol metabolic process	3.22E-02
138	GO:0010252: auxin homeostasis	3.22E-02
139	GO:0009828: plant-type cell wall loosening	3.22E-02
140	GO:0045490: pectin catabolic process	3.27E-02
141	GO:0007267: cell-cell signaling	3.36E-02
142	GO:0051607: defense response to virus	3.50E-02
143	GO:0016126: sterol biosynthetic process	3.65E-02
144	GO:0009739: response to gibberellin	3.65E-02
145	GO:0009816: defense response to bacterium, incompatible interaction	3.80E-02
146	GO:0015995: chlorophyll biosynthetic process	4.10E-02
147	GO:0016311: dephosphorylation	4.25E-02
148	GO:0009817: defense response to fungus, incompatible interaction	4.41E-02
149	GO:0018298: protein-chromophore linkage	4.41E-02
150	GO:0006468: protein phosphorylation	4.49E-02
151	GO:0000160: phosphorelay signal transduction system	4.56E-02
152	GO:0007568: aging	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
2	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
3	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	0.00E+00
4	GO:0004496: mevalonate kinase activity	0.00E+00
5	GO:0019808: polyamine binding	0.00E+00
6	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
7	GO:0015252: hydrogen ion channel activity	0.00E+00
8	GO:0016788: hydrolase activity, acting on ester bonds	1.01E-05
9	GO:0052689: carboxylic ester hydrolase activity	2.54E-05
10	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.18E-04
11	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	2.82E-04
12	GO:0005227: calcium activated cation channel activity	2.82E-04
13	GO:0008252: nucleotidase activity	2.82E-04
14	GO:0042834: peptidoglycan binding	2.82E-04
15	GO:0008568: microtubule-severing ATPase activity	2.82E-04
16	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	2.82E-04
17	GO:0034256: chlorophyll(ide) b reductase activity	2.82E-04
18	GO:0016762: xyloglucan:xyloglucosyl transferase activity	3.46E-04
19	GO:0033201: alpha-1,4-glucan synthase activity	6.19E-04
20	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	6.19E-04
21	GO:0019156: isoamylase activity	6.19E-04
22	GO:0016798: hydrolase activity, acting on glycosyl bonds	6.87E-04
23	GO:0004373: glycogen (starch) synthase activity	1.00E-03
24	GO:0030267: glyoxylate reductase (NADP) activity	1.00E-03
25	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.00E-03
26	GO:0070402: NADPH binding	1.00E-03
27	GO:0008864: formyltetrahydrofolate deformylase activity	1.00E-03
28	GO:0052655: L-valine transaminase activity	1.44E-03
29	GO:0001872: (1->3)-beta-D-glucan binding	1.44E-03
30	GO:0004445: inositol-polyphosphate 5-phosphatase activity	1.44E-03
31	GO:0035197: siRNA binding	1.44E-03
32	GO:0016149: translation release factor activity, codon specific	1.44E-03
33	GO:0052656: L-isoleucine transaminase activity	1.44E-03
34	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	1.44E-03
35	GO:0009882: blue light photoreceptor activity	1.44E-03
36	GO:0052654: L-leucine transaminase activity	1.44E-03
37	GO:0003924: GTPase activity	1.48E-03
38	GO:0033612: receptor serine/threonine kinase binding	1.58E-03
39	GO:0030570: pectate lyase activity	1.88E-03
40	GO:0008810: cellulase activity	1.88E-03
41	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.92E-03
42	GO:0004045: aminoacyl-tRNA hydrolase activity	1.92E-03
43	GO:0016987: sigma factor activity	1.92E-03
44	GO:0004084: branched-chain-amino-acid transaminase activity	1.92E-03
45	GO:0052793: pectin acetylesterase activity	1.92E-03
46	GO:0009011: starch synthase activity	1.92E-03
47	GO:0001053: plastid sigma factor activity	1.92E-03
48	GO:0008381: mechanically-gated ion channel activity	2.46E-03
49	GO:0019901: protein kinase binding	2.97E-03
50	GO:1990714: hydroxyproline O-galactosyltransferase activity	3.03E-03
51	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	3.03E-03
52	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	3.03E-03
53	GO:0004784: superoxide dismutase activity	3.03E-03
54	GO:0004556: alpha-amylase activity	3.03E-03
55	GO:0015631: tubulin binding	3.65E-03
56	GO:0051753: mannan synthase activity	3.65E-03
57	GO:0004747: ribokinase activity	3.65E-03
58	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	3.65E-03
59	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	3.65E-03
60	GO:0005200: structural constituent of cytoskeleton	4.08E-03
61	GO:0016413: O-acetyltransferase activity	4.33E-03
62	GO:0004871: signal transducer activity	4.83E-03
63	GO:0052747: sinapyl alcohol dehydrogenase activity	4.99E-03
64	GO:0004033: aldo-keto reductase (NADP) activity	4.99E-03
65	GO:0008865: fructokinase activity	4.99E-03
66	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	6.48E-03
67	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	6.48E-03
68	GO:0003747: translation release factor activity	6.48E-03
69	GO:0004222: metalloendopeptidase activity	6.60E-03
70	GO:0004674: protein serine/threonine kinase activity	6.84E-03
71	GO:0009672: auxin:proton symporter activity	7.28E-03
72	GO:0003993: acid phosphatase activity	7.94E-03
73	GO:0015020: glucuronosyltransferase activity	8.11E-03
74	GO:0005516: calmodulin binding	8.28E-03
75	GO:0047372: acylglycerol lipase activity	8.97E-03
76	GO:0005525: GTP binding	9.67E-03
77	GO:0004521: endoribonuclease activity	9.88E-03
78	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	9.88E-03
79	GO:0045551: cinnamyl-alcohol dehydrogenase activity	9.88E-03
80	GO:0005262: calcium channel activity	1.08E-02
81	GO:0009982: pseudouridine synthase activity	1.08E-02
82	GO:0004565: beta-galactosidase activity	1.08E-02
83	GO:0010329: auxin efflux transmembrane transporter activity	1.08E-02
84	GO:0000155: phosphorelay sensor kinase activity	1.08E-02
85	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.14E-02
86	GO:0005528: FK506 binding	1.48E-02
87	GO:0003714: transcription corepressor activity	1.48E-02
88	GO:0004176: ATP-dependent peptidase activity	1.70E-02
89	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.81E-02
90	GO:0016787: hydrolase activity	1.90E-02
91	GO:0005102: receptor binding	2.17E-02
92	GO:0030246: carbohydrate binding	2.30E-02
93	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.42E-02
94	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.43E-02
95	GO:0016853: isomerase activity	2.54E-02
96	GO:0010181: FMN binding	2.54E-02
97	GO:0048038: quinone binding	2.81E-02
98	GO:0051015: actin filament binding	3.08E-02
99	GO:0016301: kinase activity	3.35E-02
100	GO:0016722: oxidoreductase activity, oxidizing metal ions	3.36E-02
101	GO:0008237: metallopeptidase activity	3.36E-02
102	GO:0008017: microtubule binding	3.42E-02
103	GO:0008375: acetylglucosaminyltransferase activity	3.95E-02
104	GO:0102483: scopolin beta-glucosidase activity	4.10E-02
105	GO:0004721: phosphoprotein phosphatase activity	4.10E-02
106	GO:0030247: polysaccharide binding	4.10E-02
107	GO:0042802: identical protein binding	4.14E-02
108	GO:0008236: serine-type peptidase activity	4.25E-02
109	GO:0016887: ATPase activity	4.26E-02
110	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.41E-02
111	GO:0016757: transferase activity, transferring glycosyl groups	4.46E-02
112	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	4.72E-02
113	GO:0030145: manganese ion binding	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0042597: periplasmic space	0.00E+00
2	GO:0010368: chloroplast isoamylase complex	0.00E+00
3	GO:0009535: chloroplast thylakoid membrane	9.57E-09
4	GO:0009507: chloroplast	2.96E-06
5	GO:0009534: chloroplast thylakoid	1.50E-05
6	GO:0005886: plasma membrane	4.51E-05
7	GO:0009941: chloroplast envelope	1.07E-04
8	GO:0009570: chloroplast stroma	1.30E-04
9	GO:0048046: apoplast	1.33E-04
10	GO:0005576: extracellular region	1.40E-04
11	GO:0031977: thylakoid lumen	1.69E-04
12	GO:0005618: cell wall	1.84E-04
13	GO:0009543: chloroplast thylakoid lumen	7.83E-04
14	GO:0005875: microtubule associated complex	1.18E-03
15	GO:0032432: actin filament bundle	1.44E-03
16	GO:0005719: nuclear euchromatin	1.44E-03
17	GO:0015630: microtubule cytoskeleton	1.44E-03
18	GO:0009544: chloroplast ATP synthase complex	1.92E-03
19	GO:0009505: plant-type cell wall	2.14E-03
20	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	3.03E-03
21	GO:0030529: intracellular ribonucleoprotein complex	4.59E-03
22	GO:0009501: amyloplast	4.99E-03
23	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.48E-03
24	GO:0045298: tubulin complex	6.48E-03
25	GO:0015030: Cajal body	7.28E-03
26	GO:0009506: plasmodesma	8.38E-03
27	GO:0005884: actin filament	8.97E-03
28	GO:0046658: anchored component of plasma membrane	9.44E-03
29	GO:0005578: proteinaceous extracellular matrix	1.08E-02
30	GO:0030095: chloroplast photosystem II	1.18E-02
31	GO:0043234: protein complex	1.38E-02
32	GO:0005874: microtubule	1.45E-02
33	GO:0031969: chloroplast membrane	1.51E-02
34	GO:0009654: photosystem II oxygen evolving complex	1.59E-02
35	GO:0010287: plastoglobule	2.24E-02
36	GO:0000139: Golgi membrane	2.32E-02
37	GO:0019898: extrinsic component of membrane	2.67E-02
38	GO:0031225: anchored component of membrane	2.86E-02
39	GO:0009707: chloroplast outer membrane	4.41E-02