co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G27730

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0031990: mRNA export from nucleus in response to heat stress	0.00E+00
2	GO:0032780: negative regulation of ATPase activity	0.00E+00
3	GO:0006482: protein demethylation	0.00E+00
4	GO:0046292: formaldehyde metabolic process	0.00E+00
5	GO:0006069: ethanol oxidation	0.00E+00
6	GO:0006099: tricarboxylic acid cycle	4.29E-09
7	GO:0046686: response to cadmium ion	1.45E-08
8	GO:0006097: glyoxylate cycle	5.95E-08
9	GO:0006102: isocitrate metabolic process	5.30E-07
10	GO:0051788: response to misfolded protein	5.31E-07
11	GO:0006101: citrate metabolic process	5.31E-07
12	GO:0043248: proteasome assembly	2.28E-05
13	GO:0080093: regulation of photorespiration	1.00E-04
14	GO:0048448: stamen morphogenesis	1.00E-04
15	GO:0048455: stamen formation	1.00E-04
16	GO:0031998: regulation of fatty acid beta-oxidation	1.00E-04
17	GO:0035266: meristem growth	1.00E-04
18	GO:0010450: inflorescence meristem growth	1.00E-04
19	GO:0007292: female gamete generation	1.00E-04
20	GO:0051938: L-glutamate import	1.00E-04
21	GO:1990641: response to iron ion starvation	1.00E-04
22	GO:0034402: recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex	1.00E-04
23	GO:0006007: glucose catabolic process	1.00E-04
24	GO:0003400: regulation of COPII vesicle coating	1.00E-04
25	GO:0006499: N-terminal protein myristoylation	1.32E-04
26	GO:0043091: L-arginine import	2.36E-04
27	GO:0006597: spermine biosynthetic process	2.36E-04
28	GO:0048833: specification of floral organ number	2.36E-04
29	GO:0007051: spindle organization	2.36E-04
30	GO:0045948: positive regulation of translational initiation	2.36E-04
31	GO:0090351: seedling development	2.60E-04
32	GO:0060968: regulation of gene silencing	3.92E-04
33	GO:0000288: nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	3.92E-04
34	GO:0006511: ubiquitin-dependent protein catabolic process	5.38E-04
35	GO:0042823: pyridoxal phosphate biosynthetic process	5.64E-04
36	GO:0009408: response to heat	6.87E-04
37	GO:1902584: positive regulation of response to water deprivation	7.50E-04
38	GO:0010363: regulation of plant-type hypersensitive response	7.50E-04
39	GO:0007264: small GTPase mediated signal transduction	8.35E-04
40	GO:0007029: endoplasmic reticulum organization	9.47E-04
41	GO:0006405: RNA export from nucleus	9.47E-04
42	GO:0006465: signal peptide processing	9.47E-04
43	GO:0045927: positive regulation of growth	9.47E-04
44	GO:0006564: L-serine biosynthetic process	9.47E-04
45	GO:0010286: heat acclimation	9.96E-04
46	GO:0006121: mitochondrial electron transport, succinate to ubiquinone	1.16E-03
47	GO:0048827: phyllome development	1.16E-03
48	GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation	1.16E-03
49	GO:0048232: male gamete generation	1.16E-03
50	GO:0035435: phosphate ion transmembrane transport	1.16E-03
51	GO:0000060: protein import into nucleus, translocation	1.16E-03
52	GO:0006596: polyamine biosynthetic process	1.16E-03
53	GO:0006014: D-ribose metabolic process	1.16E-03
54	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.16E-03
55	GO:0034389: lipid particle organization	1.38E-03
56	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	1.38E-03
57	GO:0010189: vitamin E biosynthetic process	1.38E-03
58	GO:0048767: root hair elongation	1.51E-03
59	GO:0048528: post-embryonic root development	1.62E-03
60	GO:0080186: developmental vegetative growth	1.62E-03
61	GO:0009555: pollen development	1.62E-03
62	GO:0000082: G1/S transition of mitotic cell cycle	1.62E-03
63	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	1.62E-03
64	GO:0042773: ATP synthesis coupled electron transport	1.62E-03
65	GO:0010043: response to zinc ion	1.65E-03
66	GO:0010078: maintenance of root meristem identity	1.87E-03
67	GO:0009880: embryonic pattern specification	2.14E-03
68	GO:0006367: transcription initiation from RNA polymerase II promoter	2.14E-03
69	GO:0046916: cellular transition metal ion homeostasis	2.41E-03
70	GO:0009651: response to salt stress	2.61E-03
71	GO:0009965: leaf morphogenesis	2.61E-03
72	GO:0043067: regulation of programmed cell death	2.70E-03
73	GO:0048829: root cap development	3.00E-03
74	GO:0000103: sulfate assimilation	3.00E-03
75	GO:0045454: cell redox homeostasis	3.01E-03
76	GO:0009809: lignin biosynthetic process	3.11E-03
77	GO:0051603: proteolysis involved in cellular protein catabolic process	3.22E-03
78	GO:0010015: root morphogenesis	3.31E-03
79	GO:0009807: lignan biosynthetic process	3.31E-03
80	GO:0006108: malate metabolic process	3.95E-03
81	GO:0009933: meristem structural organization	4.30E-03
82	GO:0010053: root epidermal cell differentiation	4.64E-03
83	GO:0006979: response to oxidative stress	4.78E-03
84	GO:0006071: glycerol metabolic process	5.00E-03
85	GO:0007010: cytoskeleton organization	5.37E-03
86	GO:0006825: copper ion transport	5.75E-03
87	GO:0006366: transcription from RNA polymerase II promoter	6.14E-03
88	GO:0003333: amino acid transmembrane transport	6.14E-03
89	GO:0030433: ubiquitin-dependent ERAD pathway	6.54E-03
90	GO:0009306: protein secretion	7.35E-03
91	GO:0051028: mRNA transport	7.78E-03
92	GO:0010118: stomatal movement	8.21E-03
93	GO:0034220: ion transmembrane transport	8.21E-03
94	GO:0006810: transport	8.46E-03
95	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	8.52E-03
96	GO:0006662: glycerol ether metabolic process	8.65E-03
97	GO:0019252: starch biosynthetic process	9.56E-03
98	GO:0080156: mitochondrial mRNA modification	1.00E-02
99	GO:0010193: response to ozone	1.00E-02
100	GO:0000302: response to reactive oxygen species	1.00E-02
101	GO:0032502: developmental process	1.05E-02
102	GO:0030163: protein catabolic process	1.10E-02
103	GO:0009615: response to virus	1.30E-02
104	GO:0010029: regulation of seed germination	1.35E-02
105	GO:0006974: cellular response to DNA damage stimulus	1.40E-02
106	GO:0006888: ER to Golgi vesicle-mediated transport	1.46E-02
107	GO:0008219: cell death	1.57E-02
108	GO:0010311: lateral root formation	1.62E-02
109	GO:0009853: photorespiration	1.86E-02
110	GO:0045087: innate immune response	1.86E-02
111	GO:0034599: cellular response to oxidative stress	1.91E-02
112	GO:0006839: mitochondrial transport	2.03E-02
113	GO:0030001: metal ion transport	2.03E-02
114	GO:0032259: methylation	2.08E-02
115	GO:0042542: response to hydrogen peroxide	2.16E-02
116	GO:0006629: lipid metabolic process	2.17E-02
117	GO:0009744: response to sucrose	2.22E-02
118	GO:0048364: root development	2.26E-02
119	GO:0006855: drug transmembrane transport	2.48E-02
120	GO:0009664: plant-type cell wall organization	2.61E-02
121	GO:0015031: protein transport	2.68E-02
122	GO:0006486: protein glycosylation	2.75E-02
123	GO:0006096: glycolytic process	3.09E-02
124	GO:0048367: shoot system development	3.17E-02
125	GO:0048316: seed development	3.17E-02
126	GO:0009735: response to cytokinin	3.51E-02
127	GO:0055114: oxidation-reduction process	3.60E-02
128	GO:0018105: peptidyl-serine phosphorylation	3.61E-02
129	GO:0009611: response to wounding	3.92E-02
130	GO:0009845: seed germination	4.38E-02
131	GO:0006457: protein folding	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0042030: ATPase inhibitor activity	0.00E+00
2	GO:0080007: S-nitrosoglutathione reductase activity	0.00E+00
3	GO:0050342: tocopherol O-methyltransferase activity	0.00E+00
4	GO:0004622: lysophospholipase activity	0.00E+00
5	GO:0051903: S-(hydroxymethyl)glutathione dehydrogenase activity	0.00E+00
6	GO:0003846: 2-acylglycerol O-acyltransferase activity	0.00E+00
7	GO:0051723: protein methylesterase activity	0.00E+00
8	GO:0003994: aconitate hydratase activity	5.31E-07
9	GO:0051539: 4 iron, 4 sulfur cluster binding	9.78E-06
10	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	1.00E-04
11	GO:0090430: caffeoyl-CoA: alcohol caffeoyl transferase activity	1.00E-04
12	GO:0004112: cyclic-nucleotide phosphodiesterase activity	1.00E-04
13	GO:0005090: Sar guanyl-nucleotide exchange factor activity	1.00E-04
14	GO:0016768: spermine synthase activity	1.00E-04
15	GO:0005096: GTPase activator activity	1.23E-04
16	GO:0008171: O-methyltransferase activity	1.30E-04
17	GO:0004617: phosphoglycerate dehydrogenase activity	2.36E-04
18	GO:0004766: spermidine synthase activity	2.36E-04
19	GO:0046537: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity	2.36E-04
20	GO:0004775: succinate-CoA ligase (ADP-forming) activity	2.36E-04
21	GO:0048531: beta-1,3-galactosyltransferase activity	2.36E-04
22	GO:0019172: glyoxalase III activity	2.36E-04
23	GO:0015036: disulfide oxidoreductase activity	2.36E-04
24	GO:0004776: succinate-CoA ligase (GDP-forming) activity	2.36E-04
25	GO:0005093: Rab GDP-dissociation inhibitor activity	3.92E-04
26	GO:0016805: dipeptidase activity	3.92E-04
27	GO:0004298: threonine-type endopeptidase activity	3.94E-04
28	GO:0015189: L-lysine transmembrane transporter activity	5.64E-04
29	GO:0008276: protein methyltransferase activity	5.64E-04
30	GO:0001653: peptide receptor activity	5.64E-04
31	GO:0015181: arginine transmembrane transporter activity	5.64E-04
32	GO:0004449: isocitrate dehydrogenase (NAD+) activity	5.64E-04
33	GO:0004108: citrate (Si)-synthase activity	5.64E-04
34	GO:0005313: L-glutamate transmembrane transporter activity	7.50E-04
35	GO:0016004: phospholipase activator activity	7.50E-04
36	GO:0008137: NADH dehydrogenase (ubiquinone) activity	7.83E-04
37	GO:0000104: succinate dehydrogenase activity	9.47E-04
38	GO:0005496: steroid binding	9.47E-04
39	GO:0016615: malate dehydrogenase activity	1.16E-03
40	GO:0031369: translation initiation factor binding	1.16E-03
41	GO:0031593: polyubiquitin binding	1.16E-03
42	GO:0036402: proteasome-activating ATPase activity	1.16E-03
43	GO:0051020: GTPase binding	1.38E-03
44	GO:0051920: peroxiredoxin activity	1.38E-03
45	GO:0004747: ribokinase activity	1.38E-03
46	GO:0030060: L-malate dehydrogenase activity	1.38E-03
47	GO:0008235: metalloexopeptidase activity	1.62E-03
48	GO:0008121: ubiquinol-cytochrome-c reductase activity	1.62E-03
49	GO:0030145: manganese ion binding	1.65E-03
50	GO:0003697: single-stranded DNA binding	1.81E-03
51	GO:0016209: antioxidant activity	1.87E-03
52	GO:0008865: fructokinase activity	1.87E-03
53	GO:0046914: transition metal ion binding	2.14E-03
54	GO:0008233: peptidase activity	2.35E-03
55	GO:0008889: glycerophosphodiester phosphodiesterase activity	2.41E-03
56	GO:0051537: 2 iron, 2 sulfur cluster binding	2.51E-03
57	GO:0015174: basic amino acid transmembrane transporter activity	2.70E-03
58	GO:0005507: copper ion binding	2.77E-03
59	GO:0004177: aminopeptidase activity	3.31E-03
60	GO:0004129: cytochrome-c oxidase activity	3.31E-03
61	GO:0015114: phosphate ion transmembrane transporter activity	3.95E-03
62	GO:0004022: alcohol dehydrogenase (NAD) activity	3.95E-03
63	GO:0005315: inorganic phosphate transmembrane transporter activity	3.95E-03
64	GO:0051082: unfolded protein binding	4.42E-03
65	GO:0015035: protein disulfide oxidoreductase activity	4.55E-03
66	GO:0017025: TBP-class protein binding	4.64E-03
67	GO:0051536: iron-sulfur cluster binding	5.37E-03
68	GO:0003954: NADH dehydrogenase activity	5.37E-03
69	GO:0005215: transporter activity	5.51E-03
70	GO:0016887: ATPase activity	6.83E-03
71	GO:0003727: single-stranded RNA binding	7.35E-03
72	GO:0047134: protein-disulfide reductase activity	7.78E-03
73	GO:0005199: structural constituent of cell wall	8.65E-03
74	GO:0008536: Ran GTPase binding	8.65E-03
75	GO:0004791: thioredoxin-disulfide reductase activity	9.10E-03
76	GO:0048038: quinone binding	1.00E-02
77	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.10E-02
78	GO:0005524: ATP binding	1.10E-02
79	GO:0005200: structural constituent of cytoskeleton	1.20E-02
80	GO:0016597: amino acid binding	1.25E-02
81	GO:0015250: water channel activity	1.30E-02
82	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.40E-02
83	GO:0004683: calmodulin-dependent protein kinase activity	1.46E-02
84	GO:0016787: hydrolase activity	1.50E-02
85	GO:0015238: drug transmembrane transporter activity	1.62E-02
86	GO:0003824: catalytic activity	2.23E-02
87	GO:0009055: electron carrier activity	2.33E-02
88	GO:0043621: protein self-association	2.35E-02
89	GO:0051287: NAD binding	2.55E-02
90	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.75E-02
91	GO:0016491: oxidoreductase activity	2.80E-02
92	GO:0015171: amino acid transmembrane transporter activity	2.95E-02
93	GO:0045735: nutrient reservoir activity	3.09E-02
94	GO:0000166: nucleotide binding	3.84E-02
95	GO:0008565: protein transporter activity	4.70E-02

Rank	GO Term	Adjusted P value
1	GO:0000502: proteasome complex	8.62E-07
2	GO:0005829: cytosol	1.86E-06
3	GO:0005787: signal peptidase complex	1.00E-04
4	GO:0008540: proteasome regulatory particle, base subcomplex	1.09E-04
5	GO:0005739: mitochondrion	2.10E-04
6	GO:0031314: extrinsic component of mitochondrial inner membrane	2.36E-04
7	GO:0005751: mitochondrial respiratory chain complex IV	3.92E-04
8	GO:0009530: primary cell wall	3.92E-04
9	GO:0005839: proteasome core complex	3.94E-04
10	GO:0005737: cytoplasm	4.47E-04
11	GO:0005774: vacuolar membrane	7.94E-04
12	GO:0005618: cell wall	1.06E-03
13	GO:0005798: Golgi-associated vesicle	1.16E-03
14	GO:0005783: endoplasmic reticulum	1.18E-03
15	GO:0031597: cytosolic proteasome complex	1.38E-03
16	GO:0031595: nuclear proteasome complex	1.62E-03
17	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	1.87E-03
18	GO:0005886: plasma membrane	1.96E-03
19	GO:0005777: peroxisome	2.00E-03
20	GO:0005811: lipid particle	2.14E-03
21	GO:0031090: organelle membrane	2.41E-03
22	GO:0005665: DNA-directed RNA polymerase II, core complex	3.63E-03
23	GO:0005747: mitochondrial respiratory chain complex I	3.79E-03
24	GO:0005750: mitochondrial respiratory chain complex III	4.30E-03
25	GO:0030176: integral component of endoplasmic reticulum membrane	4.64E-03
26	GO:0045271: respiratory chain complex I	5.75E-03
27	GO:0016020: membrane	6.05E-03
28	GO:0005773: vacuole	6.43E-03
29	GO:0005759: mitochondrial matrix	6.93E-03
30	GO:0000785: chromatin	1.05E-02
31	GO:0005778: peroxisomal membrane	1.20E-02
32	GO:0000932: P-body	1.30E-02
33	GO:0005643: nuclear pore	1.57E-02
34	GO:0005743: mitochondrial inner membrane	2.02E-02
35	GO:0005856: cytoskeleton	2.41E-02
36	GO:0009536: plastid	2.57E-02
37	GO:0031966: mitochondrial membrane	2.61E-02
38	GO:0005794: Golgi apparatus	2.69E-02
39	GO:0009570: chloroplast stroma	2.81E-02
40	GO:0048046: apoplast	3.28E-02
41	GO:0009506: plasmodesma	3.65E-02
42	GO:0009507: chloroplast	4.91E-02