Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G27680

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0002184: cytoplasmic translational termination0.00E+00
2GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
3GO:0033614: chloroplast proton-transporting ATP synthase complex assembly0.00E+00
4GO:0006154: adenosine catabolic process0.00E+00
5GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
6GO:0015805: S-adenosyl-L-methionine transport0.00E+00
7GO:0007638: mechanosensory behavior0.00E+00
8GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
9GO:2000605: positive regulation of secondary growth0.00E+00
10GO:0090042: tubulin deacetylation0.00E+00
11GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
12GO:0010206: photosystem II repair3.00E-05
13GO:0008152: metabolic process5.33E-05
14GO:0015995: chlorophyll biosynthetic process1.59E-04
15GO:0010729: positive regulation of hydrogen peroxide biosynthetic process3.92E-04
16GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process3.92E-04
17GO:0043266: regulation of potassium ion transport3.92E-04
18GO:0010480: microsporocyte differentiation3.92E-04
19GO:0031338: regulation of vesicle fusion3.92E-04
20GO:0000481: maturation of 5S rRNA3.92E-04
21GO:2000021: regulation of ion homeostasis3.92E-04
22GO:0006148: inosine catabolic process3.92E-04
23GO:0010028: xanthophyll cycle3.92E-04
24GO:0034337: RNA folding3.92E-04
25GO:0005975: carbohydrate metabolic process4.04E-04
26GO:0048507: meristem development6.57E-04
27GO:0010275: NAD(P)H dehydrogenase complex assembly8.49E-04
28GO:0055129: L-proline biosynthetic process8.49E-04
29GO:0046741: transport of virus in host, tissue to tissue8.49E-04
30GO:0010541: acropetal auxin transport8.49E-04
31GO:0016122: xanthophyll metabolic process8.49E-04
32GO:0030388: fructose 1,6-bisphosphate metabolic process8.49E-04
33GO:0010270: photosystem II oxygen evolving complex assembly8.49E-04
34GO:0006816: calcium ion transport1.04E-03
35GO:0005983: starch catabolic process1.19E-03
36GO:0006094: gluconeogenesis1.34E-03
37GO:0006000: fructose metabolic process1.38E-03
38GO:0000280: nuclear division1.38E-03
39GO:0006518: peptide metabolic process1.38E-03
40GO:0010160: formation of animal organ boundary1.38E-03
41GO:0090630: activation of GTPase activity1.38E-03
42GO:2001295: malonyl-CoA biosynthetic process1.38E-03
43GO:0090506: axillary shoot meristem initiation1.38E-03
44GO:0009817: defense response to fungus, incompatible interaction1.43E-03
45GO:0009152: purine ribonucleotide biosynthetic process1.99E-03
46GO:0046653: tetrahydrofolate metabolic process1.99E-03
47GO:0080170: hydrogen peroxide transmembrane transport1.99E-03
48GO:0043481: anthocyanin accumulation in tissues in response to UV light1.99E-03
49GO:0010306: rhamnogalacturonan II biosynthetic process1.99E-03
50GO:0009226: nucleotide-sugar biosynthetic process1.99E-03
51GO:0051016: barbed-end actin filament capping1.99E-03
52GO:1901332: negative regulation of lateral root development1.99E-03
53GO:0043572: plastid fission1.99E-03
54GO:0046836: glycolipid transport1.99E-03
55GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.99E-03
56GO:0007231: osmosensory signaling pathway1.99E-03
57GO:0061077: chaperone-mediated protein folding2.54E-03
58GO:0015994: chlorophyll metabolic process2.67E-03
59GO:0033500: carbohydrate homeostasis2.67E-03
60GO:0031122: cytoplasmic microtubule organization2.67E-03
61GO:0010021: amylopectin biosynthetic process2.67E-03
62GO:0051781: positive regulation of cell division2.67E-03
63GO:0035428: hexose transmembrane transport2.78E-03
64GO:0000304: response to singlet oxygen3.42E-03
65GO:0016120: carotene biosynthetic process3.42E-03
66GO:0007094: mitotic spindle assembly checkpoint3.42E-03
67GO:0046323: glucose import4.17E-03
68GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.23E-03
69GO:0006655: phosphatidylglycerol biosynthetic process4.23E-03
70GO:0060918: auxin transport4.23E-03
71GO:0006828: manganese ion transport4.23E-03
72GO:0006561: proline biosynthetic process4.23E-03
73GO:0010304: PSII associated light-harvesting complex II catabolic process4.23E-03
74GO:0006751: glutathione catabolic process4.23E-03
75GO:0042549: photosystem II stabilization4.23E-03
76GO:0010067: procambium histogenesis5.09E-03
77GO:0042026: protein refolding5.09E-03
78GO:0006458: 'de novo' protein folding5.09E-03
79GO:0009942: longitudinal axis specification5.09E-03
80GO:0009658: chloroplast organization5.19E-03
81GO:1901657: glycosyl compound metabolic process5.87E-03
82GO:0051693: actin filament capping6.02E-03
83GO:0048437: floral organ development6.02E-03
84GO:0010196: nonphotochemical quenching6.02E-03
85GO:0010439: regulation of glucosinolate biosynthetic process7.00E-03
86GO:0030091: protein repair7.00E-03
87GO:0032508: DNA duplex unwinding7.00E-03
88GO:0010492: maintenance of shoot apical meristem identity7.00E-03
89GO:0016559: peroxisome fission7.00E-03
90GO:0010027: thylakoid membrane organization7.46E-03
91GO:0006002: fructose 6-phosphate metabolic process8.03E-03
92GO:0071482: cellular response to light stimulus8.03E-03
93GO:0015996: chlorophyll catabolic process8.03E-03
94GO:0009657: plastid organization8.03E-03
95GO:0032544: plastid translation8.03E-03
96GO:0015979: photosynthesis8.80E-03
97GO:0090305: nucleic acid phosphodiester bond hydrolysis9.12E-03
98GO:0006098: pentose-phosphate shunt9.12E-03
99GO:0000902: cell morphogenesis9.12E-03
100GO:0006779: porphyrin-containing compound biosynthetic process1.03E-02
101GO:0007346: regulation of mitotic cell cycle1.03E-02
102GO:0006633: fatty acid biosynthetic process1.09E-02
103GO:0006782: protoporphyrinogen IX biosynthetic process1.14E-02
104GO:0019538: protein metabolic process1.14E-02
105GO:0045036: protein targeting to chloroplast1.14E-02
106GO:0009773: photosynthetic electron transport in photosystem I1.27E-02
107GO:1903507: negative regulation of nucleic acid-templated transcription1.27E-02
108GO:0006415: translational termination1.27E-02
109GO:0018119: peptidyl-cysteine S-nitrosylation1.27E-02
110GO:0048229: gametophyte development1.27E-02
111GO:0009684: indoleacetic acid biosynthetic process1.27E-02
112GO:0046856: phosphatidylinositol dephosphorylation1.27E-02
113GO:0008361: regulation of cell size1.40E-02
114GO:0006820: anion transport1.40E-02
115GO:0016024: CDP-diacylglycerol biosynthetic process1.40E-02
116GO:0009753: response to jasmonic acid1.45E-02
117GO:0005986: sucrose biosynthetic process1.53E-02
118GO:0010102: lateral root morphogenesis1.53E-02
119GO:0030036: actin cytoskeleton organization1.53E-02
120GO:0010075: regulation of meristem growth1.53E-02
121GO:0009767: photosynthetic electron transport chain1.53E-02
122GO:0048768: root hair cell tip growth1.66E-02
123GO:0010020: chloroplast fission1.66E-02
124GO:0007015: actin filament organization1.66E-02
125GO:0019253: reductive pentose-phosphate cycle1.66E-02
126GO:0010223: secondary shoot formation1.66E-02
127GO:0010540: basipetal auxin transport1.66E-02
128GO:0009934: regulation of meristem structural organization1.66E-02
129GO:0007031: peroxisome organization1.81E-02
130GO:0005985: sucrose metabolic process1.81E-02
131GO:0071732: cellular response to nitric oxide1.81E-02
132GO:0010030: positive regulation of seed germination1.81E-02
133GO:0070588: calcium ion transmembrane transport1.81E-02
134GO:0006833: water transport1.95E-02
135GO:0042538: hyperosmotic salinity response2.02E-02
136GO:0008299: isoprenoid biosynthetic process2.25E-02
137GO:0016575: histone deacetylation2.25E-02
138GO:0007017: microtubule-based process2.25E-02
139GO:0006810: transport2.35E-02
140GO:0031408: oxylipin biosynthetic process2.41E-02
141GO:2000022: regulation of jasmonic acid mediated signaling pathway2.57E-02
142GO:0071369: cellular response to ethylene stimulus2.73E-02
143GO:0001944: vasculature development2.73E-02
144GO:0006012: galactose metabolic process2.73E-02
145GO:0048443: stamen development2.90E-02
146GO:0009306: protein secretion2.90E-02
147GO:0010089: xylem development2.90E-02
148GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.92E-02
149GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.07E-02
150GO:0009624: response to nematode3.08E-02
151GO:0048653: anther development3.25E-02
152GO:0042631: cellular response to water deprivation3.25E-02
153GO:0034220: ion transmembrane transport3.25E-02
154GO:0000413: protein peptidyl-prolyl isomerization3.25E-02
155GO:0010051: xylem and phloem pattern formation3.25E-02
156GO:0010087: phloem or xylem histogenesis3.25E-02
157GO:0009958: positive gravitropism3.42E-02
158GO:0010305: leaf vascular tissue pattern formation3.42E-02
159GO:0048868: pollen tube development3.42E-02
160GO:0009791: post-embryonic development3.79E-02
161GO:0019252: starch biosynthetic process3.79E-02
162GO:0009733: response to auxin3.84E-02
163GO:0071554: cell wall organization or biogenesis3.98E-02
164GO:0000302: response to reactive oxygen species3.98E-02
165GO:0002229: defense response to oomycetes3.98E-02
166GO:0007264: small GTPase mediated signal transduction4.17E-02
167GO:0019761: glucosinolate biosynthetic process4.17E-02
168GO:0032259: methylation4.30E-02
169GO:0030163: protein catabolic process4.36E-02
170GO:0071281: cellular response to iron ion4.36E-02
171GO:0016042: lipid catabolic process4.38E-02
172GO:0009790: embryo development4.49E-02
173GO:0006629: lipid metabolic process4.53E-02
174GO:0009639: response to red or far red light4.56E-02
175GO:0051607: defense response to virus4.96E-02
RankGO TermAdjusted P value
1GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
2GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
3GO:0046422: violaxanthin de-epoxidase activity0.00E+00
4GO:0043864: indoleacetamide hydrolase activity0.00E+00
5GO:0004561: alpha-N-acetylglucosaminidase activity0.00E+00
6GO:0051721: protein phosphatase 2A binding0.00E+00
7GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
8GO:0042903: tubulin deacetylase activity0.00E+00
9GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity0.00E+00
10GO:0043014: alpha-tubulin binding0.00E+00
11GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
12GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
13GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
14GO:0051861: glycolipid binding9.22E-05
15GO:0005528: FK506 binding1.92E-04
16GO:0008200: ion channel inhibitor activity2.05E-04
17GO:0004723: calcium-dependent protein serine/threonine phosphatase activity2.77E-04
18GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity3.92E-04
19GO:0004856: xylulokinase activity3.92E-04
20GO:0004349: glutamate 5-kinase activity3.92E-04
21GO:0050308: sugar-phosphatase activity3.92E-04
22GO:0004350: glutamate-5-semialdehyde dehydrogenase activity3.92E-04
23GO:0008568: microtubule-severing ATPase activity3.92E-04
24GO:0019203: carbohydrate phosphatase activity3.92E-04
25GO:0034256: chlorophyll(ide) b reductase activity3.92E-04
26GO:0030941: chloroplast targeting sequence binding3.92E-04
27GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity3.92E-04
28GO:0047622: adenosine nucleosidase activity3.92E-04
29GO:0050139: nicotinate-N-glucosyltransferase activity3.92E-04
30GO:0003755: peptidyl-prolyl cis-trans isomerase activity5.44E-04
31GO:0047724: inosine nucleosidase activity8.49E-04
32GO:0033201: alpha-1,4-glucan synthase activity8.49E-04
33GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity8.49E-04
34GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity8.49E-04
35GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity8.49E-04
36GO:0016868: intramolecular transferase activity, phosphotransferases8.49E-04
37GO:0003839: gamma-glutamylcyclotransferase activity8.49E-04
38GO:0004565: beta-galactosidase activity1.34E-03
39GO:0008236: serine-type peptidase activity1.34E-03
40GO:0004373: glycogen (starch) synthase activity1.38E-03
41GO:0004075: biotin carboxylase activity1.38E-03
42GO:0030267: glyoxylate reductase (NADP) activity1.38E-03
43GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.38E-03
44GO:0070402: NADPH binding1.38E-03
45GO:0008864: formyltetrahydrofolate deformylase activity1.38E-03
46GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity1.38E-03
47GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity1.38E-03
48GO:0004222: metalloendopeptidase activity1.61E-03
49GO:0017089: glycolipid transporter activity1.99E-03
50GO:0019201: nucleotide kinase activity1.99E-03
51GO:0004445: inositol-polyphosphate 5-phosphatase activity1.99E-03
52GO:0048487: beta-tubulin binding1.99E-03
53GO:0016149: translation release factor activity, codon specific1.99E-03
54GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity1.99E-03
55GO:0016851: magnesium chelatase activity1.99E-03
56GO:0043023: ribosomal large subunit binding1.99E-03
57GO:0004176: ATP-dependent peptidase activity2.54E-03
58GO:0033612: receptor serine/threonine kinase binding2.54E-03
59GO:0004045: aminoacyl-tRNA hydrolase activity2.67E-03
60GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds2.67E-03
61GO:0009011: starch synthase activity2.67E-03
62GO:0016836: hydro-lyase activity2.67E-03
63GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.67E-03
64GO:0016787: hydrolase activity2.90E-03
65GO:0030570: pectate lyase activity3.04E-03
66GO:0008381: mechanically-gated ion channel activity3.42E-03
67GO:0016773: phosphotransferase activity, alcohol group as acceptor3.42E-03
68GO:0017137: Rab GTPase binding3.42E-03
69GO:0004040: amidase activity3.42E-03
70GO:0003989: acetyl-CoA carboxylase activity3.42E-03
71GO:0004332: fructose-bisphosphate aldolase activity4.23E-03
72GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity4.23E-03
73GO:0004130: cytochrome-c peroxidase activity4.23E-03
74GO:0004556: alpha-amylase activity4.23E-03
75GO:0004366: glycerol-3-phosphate O-acyltransferase activity4.23E-03
76GO:0042578: phosphoric ester hydrolase activity4.23E-03
77GO:2001070: starch binding4.23E-03
78GO:0016853: isomerase activity4.49E-03
79GO:0005355: glucose transmembrane transporter activity4.49E-03
80GO:0033743: peptide-methionine (R)-S-oxide reductase activity5.09E-03
81GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity5.09E-03
82GO:0015631: tubulin binding5.09E-03
83GO:0004017: adenylate kinase activity5.09E-03
84GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity5.09E-03
85GO:0051920: peroxiredoxin activity5.09E-03
86GO:0016788: hydrolase activity, acting on ester bonds5.34E-03
87GO:0008237: metallopeptidase activity6.64E-03
88GO:0016491: oxidoreductase activity6.95E-03
89GO:0004034: aldose 1-epimerase activity7.00E-03
90GO:0043022: ribosome binding7.00E-03
91GO:0016209: antioxidant activity7.00E-03
92GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)8.03E-03
93GO:0102483: scopolin beta-glucosidase activity8.80E-03
94GO:0016829: lyase activity9.01E-03
95GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors9.12E-03
96GO:0008138: protein tyrosine/serine/threonine phosphatase activity9.12E-03
97GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity9.12E-03
98GO:0003747: translation release factor activity9.12E-03
99GO:0004252: serine-type endopeptidase activity9.31E-03
100GO:0005509: calcium ion binding9.67E-03
101GO:0005384: manganese ion transmembrane transporter activity1.03E-02
102GO:0047617: acyl-CoA hydrolase activity1.03E-02
103GO:0005096: GTPase activator activity1.03E-02
104GO:0044183: protein binding involved in protein folding1.27E-02
105GO:0047372: acylglycerol lipase activity1.27E-02
106GO:0008422: beta-glucosidase activity1.36E-02
107GO:0008378: galactosyltransferase activity1.40E-02
108GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity1.40E-02
109GO:0004022: alcohol dehydrogenase (NAD) activity1.53E-02
110GO:0010329: auxin efflux transmembrane transporter activity1.53E-02
111GO:0015095: magnesium ion transmembrane transporter activity1.53E-02
112GO:0005262: calcium channel activity1.53E-02
113GO:0043621: protein self-association1.73E-02
114GO:0004407: histone deacetylase activity2.10E-02
115GO:0003714: transcription corepressor activity2.10E-02
116GO:0043424: protein histidine kinase binding2.25E-02
117GO:0005102: receptor binding3.07E-02
118GO:0052689: carboxylic ester hydrolase activity3.17E-02
119GO:0004871: signal transducer activity3.71E-02
120GO:0019901: protein kinase binding3.79E-02
121GO:0048038: quinone binding3.98E-02
122GO:0004518: nuclease activity4.17E-02
123GO:0051015: actin filament binding4.36E-02
124GO:0015144: carbohydrate transmembrane transporter activity4.60E-02
125GO:0030246: carbohydrate binding4.69E-02
126GO:0005200: structural constituent of cytoskeleton4.76E-02
127GO:0016413: O-acetyltransferase activity4.96E-02
128GO:0016597: amino acid binding4.96E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast7.30E-35
2GO:0009534: chloroplast thylakoid8.85E-21
3GO:0009570: chloroplast stroma3.93E-20
4GO:0009535: chloroplast thylakoid membrane1.94E-14
5GO:0009543: chloroplast thylakoid lumen1.36E-12
6GO:0009941: chloroplast envelope3.90E-11
7GO:0031977: thylakoid lumen1.74E-10
8GO:0009579: thylakoid2.99E-09
9GO:0031969: chloroplast membrane1.05E-05
10GO:0030095: chloroplast photosystem II1.19E-04
11GO:0009533: chloroplast stromal thylakoid3.58E-04
12GO:0009344: nitrite reductase complex [NAD(P)H]3.92E-04
13GO:0008290: F-actin capping protein complex8.49E-04
14GO:0010007: magnesium chelatase complex1.38E-03
15GO:0009531: secondary cell wall1.99E-03
16GO:0009654: photosystem II oxygen evolving complex2.31E-03
17GO:0005828: kinetochore microtubule2.67E-03
18GO:0000776: kinetochore3.42E-03
19GO:0019898: extrinsic component of membrane4.81E-03
20GO:0010369: chromocenter5.09E-03
21GO:0000777: condensed chromosome kinetochore5.09E-03
22GO:0009536: plastid5.97E-03
23GO:0031359: integral component of chloroplast outer membrane6.02E-03
24GO:0009501: amyloplast7.00E-03
25GO:0010287: plastoglobule7.60E-03
26GO:0005779: integral component of peroxisomal membrane8.03E-03
27GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)9.12E-03
28GO:0045298: tubulin complex9.12E-03
29GO:0005876: spindle microtubule1.03E-02
30GO:0048046: apoplast1.10E-02
31GO:0005884: actin filament1.27E-02
32GO:0032040: small-subunit processome1.40E-02
33GO:0009508: plastid chromosome1.53E-02
34GO:0043234: protein complex1.95E-02
35GO:0042651: thylakoid membrane2.25E-02
36GO:0009706: chloroplast inner membrane3.08E-02
37GO:0009295: nucleoid4.76E-02
38GO:0005778: peroxisomal membrane4.76E-02
39GO:0010319: stromule4.76E-02
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Gene type



Gene DE type