co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G27050

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0061157: mRNA destabilization	0.00E+00
2	GO:2000505: regulation of energy homeostasis	0.00E+00
3	GO:0045014: negative regulation of transcription by glucose	0.00E+00
4	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
5	GO:0009773: photosynthetic electron transport in photosystem I	1.05E-06
6	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	3.96E-05
7	GO:0006810: transport	4.20E-05
8	GO:0015979: photosynthesis	5.83E-05
9	GO:0015995: chlorophyll biosynthetic process	1.05E-04
10	GO:0006833: water transport	1.19E-04
11	GO:0042549: photosystem II stabilization	1.60E-04
12	GO:0034220: ion transmembrane transport	3.28E-04
13	GO:0033206: meiotic cytokinesis	3.34E-04
14	GO:0043087: regulation of GTPase activity	3.34E-04
15	GO:2000021: regulation of ion homeostasis	3.34E-04
16	GO:0034337: RNA folding	3.34E-04
17	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	3.34E-04
18	GO:0060627: regulation of vesicle-mediated transport	3.34E-04
19	GO:0043266: regulation of potassium ion transport	3.34E-04
20	GO:0071370: cellular response to gibberellin stimulus	3.34E-04
21	GO:0010480: microsporocyte differentiation	3.34E-04
22	GO:0000481: maturation of 5S rRNA	3.34E-04
23	GO:0010206: photosystem II repair	5.24E-04
24	GO:0010205: photoinhibition	6.19E-04
25	GO:0009638: phototropism	6.19E-04
26	GO:1900871: chloroplast mRNA modification	7.29E-04
27	GO:0010541: acropetal auxin transport	7.29E-04
28	GO:0045493: xylan catabolic process	1.18E-03
29	GO:2001295: malonyl-CoA biosynthetic process	1.18E-03
30	GO:0006013: mannose metabolic process	1.18E-03
31	GO:0010160: formation of animal organ boundary	1.18E-03
32	GO:0006518: peptide metabolic process	1.18E-03
33	GO:0043617: cellular response to sucrose starvation	1.18E-03
34	GO:0010218: response to far red light	1.20E-03
35	GO:0051513: regulation of monopolar cell growth	1.70E-03
36	GO:0051639: actin filament network formation	1.70E-03
37	GO:0034059: response to anoxia	1.70E-03
38	GO:0080170: hydrogen peroxide transmembrane transport	1.70E-03
39	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.70E-03
40	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.70E-03
41	GO:0009226: nucleotide-sugar biosynthetic process	1.70E-03
42	GO:1901332: negative regulation of lateral root development	1.70E-03
43	GO:0006808: regulation of nitrogen utilization	2.28E-03
44	GO:0051764: actin crosslink formation	2.28E-03
45	GO:0045727: positive regulation of translation	2.28E-03
46	GO:0015994: chlorophyll metabolic process	2.28E-03
47	GO:0006546: glycine catabolic process	2.28E-03
48	GO:0048443: stamen development	2.62E-03
49	GO:0042538: hyperosmotic salinity response	2.64E-03
50	GO:0008152: metabolic process	2.74E-03
51	GO:2000762: regulation of phenylpropanoid metabolic process	2.91E-03
52	GO:0009958: positive gravitropism	3.30E-03
53	GO:0006751: glutathione catabolic process	3.60E-03
54	GO:0000470: maturation of LSU-rRNA	3.60E-03
55	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	3.60E-03
56	GO:0000741: karyogamy	3.60E-03
57	GO:0060918: auxin transport	3.60E-03
58	GO:1902456: regulation of stomatal opening	3.60E-03
59	GO:0010019: chloroplast-nucleus signaling pathway	4.33E-03
60	GO:2000033: regulation of seed dormancy process	4.33E-03
61	GO:1900056: negative regulation of leaf senescence	5.11E-03
62	GO:0048437: floral organ development	5.11E-03
63	GO:0010196: nonphotochemical quenching	5.11E-03
64	GO:0009645: response to low light intensity stimulus	5.11E-03
65	GO:0009938: negative regulation of gibberellic acid mediated signaling pathway	5.94E-03
66	GO:0032508: DNA duplex unwinding	5.94E-03
67	GO:0009932: cell tip growth	6.81E-03
68	GO:0010233: phloem transport	6.81E-03
69	GO:0032544: plastid translation	6.81E-03
70	GO:0018298: protein-chromophore linkage	7.70E-03
71	GO:0048589: developmental growth	7.73E-03
72	GO:0009051: pentose-phosphate shunt, oxidative branch	7.73E-03
73	GO:0090305: nucleic acid phosphodiester bond hydrolysis	7.73E-03
74	GO:0009733: response to auxin	8.93E-03
75	GO:0055085: transmembrane transport	9.57E-03
76	GO:0048829: root cap development	9.69E-03
77	GO:0048229: gametophyte development	1.07E-02
78	GO:0009684: indoleacetic acid biosynthetic process	1.07E-02
79	GO:0010015: root morphogenesis	1.07E-02
80	GO:0008285: negative regulation of cell proliferation	1.07E-02
81	GO:0043085: positive regulation of catalytic activity	1.07E-02
82	GO:0008361: regulation of cell size	1.18E-02
83	GO:0016024: CDP-diacylglycerol biosynthetic process	1.18E-02
84	GO:0010152: pollen maturation	1.18E-02
85	GO:0009718: anthocyanin-containing compound biosynthetic process	1.29E-02
86	GO:0010075: regulation of meristem growth	1.29E-02
87	GO:0009767: photosynthetic electron transport chain	1.29E-02
88	GO:0010102: lateral root morphogenesis	1.29E-02
89	GO:0006006: glucose metabolic process	1.29E-02
90	GO:0009644: response to high light intensity	1.37E-02
91	GO:0010540: basipetal auxin transport	1.41E-02
92	GO:0009934: regulation of meristem structural organization	1.41E-02
93	GO:0010143: cutin biosynthetic process	1.41E-02
94	GO:0010207: photosystem II assembly	1.41E-02
95	GO:0009734: auxin-activated signaling pathway	1.53E-02
96	GO:0010030: positive regulation of seed germination	1.53E-02
97	GO:0010053: root epidermal cell differentiation	1.53E-02
98	GO:0005985: sucrose metabolic process	1.53E-02
99	GO:0006636: unsaturated fatty acid biosynthetic process	1.65E-02
100	GO:0006364: rRNA processing	1.71E-02
101	GO:0009585: red, far-red light phototransduction	1.71E-02
102	GO:2000377: regulation of reactive oxygen species metabolic process	1.77E-02
103	GO:0005992: trehalose biosynthetic process	1.77E-02
104	GO:0009863: salicylic acid mediated signaling pathway	1.77E-02
105	GO:0010187: negative regulation of seed germination	1.77E-02
106	GO:0051017: actin filament bundle assembly	1.77E-02
107	GO:0006418: tRNA aminoacylation for protein translation	1.90E-02
108	GO:0007017: microtubule-based process	1.90E-02
109	GO:0009768: photosynthesis, light harvesting in photosystem I	1.90E-02
110	GO:0009723: response to ethylene	1.91E-02
111	GO:0048511: rhythmic process	2.03E-02
112	GO:0061077: chaperone-mediated protein folding	2.03E-02
113	GO:0003333: amino acid transmembrane transport	2.03E-02
114	GO:0009416: response to light stimulus	2.16E-02
115	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.17E-02
116	GO:0010017: red or far-red light signaling pathway	2.17E-02
117	GO:0009686: gibberellin biosynthetic process	2.31E-02
118	GO:0009306: protein secretion	2.45E-02
119	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.60E-02
120	GO:0000413: protein peptidyl-prolyl isomerization	2.74E-02
121	GO:0048653: anther development	2.74E-02
122	GO:0042631: cellular response to water deprivation	2.74E-02
123	GO:0080022: primary root development	2.74E-02
124	GO:0010197: polar nucleus fusion	2.89E-02
125	GO:0010268: brassinosteroid homeostasis	2.89E-02
126	GO:0007165: signal transduction	2.90E-02
127	GO:0007018: microtubule-based movement	3.05E-02
128	GO:0042752: regulation of circadian rhythm	3.05E-02
129	GO:0009646: response to absence of light	3.05E-02
130	GO:0016132: brassinosteroid biosynthetic process	3.36E-02
131	GO:0071554: cell wall organization or biogenesis	3.36E-02
132	GO:0002229: defense response to oomycetes	3.36E-02
133	GO:0000302: response to reactive oxygen species	3.36E-02
134	GO:0042744: hydrogen peroxide catabolic process	3.47E-02
135	GO:0009630: gravitropism	3.52E-02
136	GO:0010583: response to cyclopentenone	3.52E-02
137	GO:0009409: response to cold	3.54E-02
138	GO:0030163: protein catabolic process	3.69E-02
139	GO:0006633: fatty acid biosynthetic process	3.82E-02
140	GO:0016125: sterol metabolic process	3.85E-02
141	GO:0009639: response to red or far red light	3.85E-02
142	GO:0071805: potassium ion transmembrane transport	4.02E-02
143	GO:0010027: thylakoid membrane organization	4.37E-02
144	GO:0010029: regulation of seed germination	4.54E-02
145	GO:0009739: response to gibberellin	4.68E-02
146	GO:0042128: nitrate assimilation	4.72E-02
147	GO:0010411: xyloglucan metabolic process	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
2	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
3	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
4	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
5	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
6	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
7	GO:0043864: indoleacetamide hydrolase activity	0.00E+00
8	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
9	GO:0005528: FK506 binding	1.24E-07
10	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.79E-06
11	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	7.06E-05
12	GO:0005096: GTPase activator activity	1.38E-04
13	GO:0046906: tetrapyrrole binding	3.34E-04
14	GO:0051777: ent-kaurenoate oxidase activity	3.34E-04
15	GO:0045485: omega-6 fatty acid desaturase activity	3.34E-04
16	GO:0047746: chlorophyllase activity	7.29E-04
17	GO:0016868: intramolecular transferase activity, phosphotransferases	7.29E-04
18	GO:0003839: gamma-glutamylcyclotransferase activity	7.29E-04
19	GO:0005094: Rho GDP-dissociation inhibitor activity	7.29E-04
20	GO:0004047: aminomethyltransferase activity	7.29E-04
21	GO:0015250: water channel activity	7.65E-04
22	GO:0030267: glyoxylate reductase (NADP) activity	1.18E-03
23	GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity	1.18E-03
24	GO:0002161: aminoacyl-tRNA editing activity	1.18E-03
25	GO:0004075: biotin carboxylase activity	1.18E-03
26	GO:0016787: hydrolase activity	1.57E-03
27	GO:0001872: (1->3)-beta-D-glucan binding	1.70E-03
28	GO:0016851: magnesium chelatase activity	1.70E-03
29	GO:0046556: alpha-L-arabinofuranosidase activity	2.28E-03
30	GO:0010011: auxin binding	2.28E-03
31	GO:0004345: glucose-6-phosphate dehydrogenase activity	2.28E-03
32	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	2.28E-03
33	GO:0010328: auxin influx transmembrane transporter activity	2.28E-03
34	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	2.28E-03
35	GO:0009044: xylan 1,4-beta-xylosidase activity	2.28E-03
36	GO:0003989: acetyl-CoA carboxylase activity	2.91E-03
37	GO:0004040: amidase activity	2.91E-03
38	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	3.60E-03
39	GO:0004130: cytochrome-c peroxidase activity	3.60E-03
40	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	3.60E-03
41	GO:0042578: phosphoric ester hydrolase activity	3.60E-03
42	GO:0048038: quinone binding	4.08E-03
43	GO:0004559: alpha-mannosidase activity	4.33E-03
44	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	4.33E-03
45	GO:0004017: adenylate kinase activity	4.33E-03
46	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	4.33E-03
47	GO:0016791: phosphatase activity	4.94E-03
48	GO:0019899: enzyme binding	5.11E-03
49	GO:0004564: beta-fructofuranosidase activity	5.94E-03
50	GO:0004869: cysteine-type endopeptidase inhibitor activity	5.94E-03
51	GO:0043022: ribosome binding	5.94E-03
52	GO:0019843: rRNA binding	6.03E-03
53	GO:0016168: chlorophyll binding	6.23E-03
54	GO:0000989: transcription factor activity, transcription factor binding	7.73E-03
55	GO:0004575: sucrose alpha-glucosidase activity	8.68E-03
56	GO:0004805: trehalose-phosphatase activity	9.69E-03
57	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.07E-02
58	GO:0008378: galactosyltransferase activity	1.18E-02
59	GO:0000049: tRNA binding	1.18E-02
60	GO:0031072: heat shock protein binding	1.29E-02
61	GO:0004565: beta-galactosidase activity	1.29E-02
62	GO:0010329: auxin efflux transmembrane transporter activity	1.29E-02
63	GO:0008081: phosphoric diester hydrolase activity	1.29E-02
64	GO:0051537: 2 iron, 2 sulfur cluster binding	1.37E-02
65	GO:0008266: poly(U) RNA binding	1.41E-02
66	GO:0031409: pigment binding	1.65E-02
67	GO:0015079: potassium ion transmembrane transporter activity	1.90E-02
68	GO:0033612: receptor serine/threonine kinase binding	2.03E-02
69	GO:0005515: protein binding	2.10E-02
70	GO:0022891: substrate-specific transmembrane transporter activity	2.31E-02
71	GO:0030570: pectate lyase activity	2.31E-02
72	GO:0003727: single-stranded RNA binding	2.45E-02
73	GO:0003756: protein disulfide isomerase activity	2.45E-02
74	GO:0004812: aminoacyl-tRNA ligase activity	2.60E-02
75	GO:0004871: signal transducer activity	2.77E-02
76	GO:0050662: coenzyme binding	3.05E-02
77	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.24E-02
78	GO:0016829: lyase activity	3.30E-02
79	GO:0004518: nuclease activity	3.52E-02
80	GO:0051015: actin filament binding	3.69E-02
81	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.91E-02
82	GO:0008483: transaminase activity	4.02E-02
83	GO:0005200: structural constituent of cytoskeleton	4.02E-02
84	GO:0016413: O-acetyltransferase activity	4.19E-02
85	GO:0030247: polysaccharide binding	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
3	GO:0009534: chloroplast thylakoid	5.74E-22
4	GO:0009507: chloroplast	4.84E-19
5	GO:0009535: chloroplast thylakoid membrane	8.78E-19
6	GO:0009543: chloroplast thylakoid lumen	3.36E-13
7	GO:0009570: chloroplast stroma	1.39E-11
8	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.17E-09
9	GO:0009941: chloroplast envelope	2.56E-07
10	GO:0009579: thylakoid	6.91E-07
11	GO:0031977: thylakoid lumen	2.38E-05
12	GO:0030095: chloroplast photosystem II	8.43E-05
13	GO:0009505: plant-type cell wall	1.03E-04
14	GO:0009654: photosystem II oxygen evolving complex	1.60E-04
15	GO:0009533: chloroplast stromal thylakoid	2.83E-04
16	GO:0009344: nitrite reductase complex [NAD(P)H]	3.34E-04
17	GO:0009782: photosystem I antenna complex	3.34E-04
18	GO:0009523: photosystem II	4.37E-04
19	GO:0019898: extrinsic component of membrane	4.37E-04
20	GO:0010007: magnesium chelatase complex	1.18E-03
21	GO:0009531: secondary cell wall	1.70E-03
22	GO:0005775: vacuolar lumen	1.70E-03
23	GO:0032432: actin filament bundle	1.70E-03
24	GO:0042651: thylakoid membrane	1.84E-03
25	GO:0010287: plastoglobule	5.63E-03
26	GO:0009538: photosystem I reaction center	5.94E-03
27	GO:0005618: cell wall	7.53E-03
28	GO:0045298: tubulin complex	7.73E-03
29	GO:0008180: COP9 signalosome	7.73E-03
30	GO:0005884: actin filament	1.07E-02
31	GO:0032040: small-subunit processome	1.18E-02
32	GO:0009574: preprophase band	1.29E-02
33	GO:0005886: plasma membrane	1.35E-02
34	GO:0048046: apoplast	1.50E-02
35	GO:0030076: light-harvesting complex	1.53E-02
36	GO:0005773: vacuole	1.55E-02
37	GO:0009506: plasmodesma	1.78E-02
38	GO:0005874: microtubule	2.00E-02
39	GO:0031969: chloroplast membrane	2.08E-02
40	GO:0016020: membrane	2.30E-02
41	GO:0005871: kinesin complex	2.60E-02
42	GO:0005887: integral component of plasma membrane	4.93E-02