co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G25900

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
2	GO:0034220: ion transmembrane transport	1.43E-06
3	GO:0080170: hydrogen peroxide transmembrane transport	8.27E-06
4	GO:0006833: water transport	1.66E-05
5	GO:0000481: maturation of 5S rRNA	1.37E-04
6	GO:0034337: RNA folding	1.37E-04
7	GO:0000476: maturation of 4.5S rRNA	1.37E-04
8	GO:0000967: rRNA 5'-end processing	1.37E-04
9	GO:0015979: photosynthesis	1.41E-04
10	GO:0010206: photosystem II repair	1.44E-04
11	GO:0006094: gluconeogenesis	3.14E-04
12	GO:0001736: establishment of planar polarity	3.16E-04
13	GO:0006521: regulation of cellular amino acid metabolic process	3.16E-04
14	GO:0030388: fructose 1,6-bisphosphate metabolic process	3.16E-04
15	GO:0034470: ncRNA processing	3.16E-04
16	GO:0006000: fructose metabolic process	5.20E-04
17	GO:0006013: mannose metabolic process	5.20E-04
18	GO:0009723: response to ethylene	6.57E-04
19	GO:1901332: negative regulation of lateral root development	7.44E-04
20	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	7.44E-04
21	GO:0051513: regulation of monopolar cell growth	7.44E-04
22	GO:0034059: response to anoxia	7.44E-04
23	GO:0006546: glycine catabolic process	9.85E-04
24	GO:0010023: proanthocyanidin biosynthetic process	9.85E-04
25	GO:0045727: positive regulation of translation	9.85E-04
26	GO:0015994: chlorophyll metabolic process	9.85E-04
27	GO:0030104: water homeostasis	9.85E-04
28	GO:0006810: transport	1.20E-03
29	GO:2000762: regulation of phenylpropanoid metabolic process	1.25E-03
30	GO:0006461: protein complex assembly	1.25E-03
31	GO:0008152: metabolic process	1.51E-03
32	GO:1902456: regulation of stomatal opening	1.53E-03
33	GO:0006751: glutathione catabolic process	1.53E-03
34	GO:0010256: endomembrane system organization	1.53E-03
35	GO:0000741: karyogamy	1.53E-03
36	GO:0009651: response to salt stress	1.92E-03
37	GO:0009645: response to low light intensity stimulus	2.15E-03
38	GO:0010196: nonphotochemical quenching	2.15E-03
39	GO:0018298: protein-chromophore linkage	2.18E-03
40	GO:0010311: lateral root formation	2.29E-03
41	GO:0032508: DNA duplex unwinding	2.49E-03
42	GO:0009735: response to cytokinin	2.72E-03
43	GO:0032544: plastid translation	2.85E-03
44	GO:0006002: fructose 6-phosphate metabolic process	2.85E-03
45	GO:0009657: plastid organization	2.85E-03
46	GO:0090305: nucleic acid phosphodiester bond hydrolysis	3.22E-03
47	GO:0010205: photoinhibition	3.60E-03
48	GO:0009638: phototropism	3.60E-03
49	GO:0009644: response to high light intensity	3.82E-03
50	GO:0048829: root cap development	4.00E-03
51	GO:1903507: negative regulation of nucleic acid-templated transcription	4.42E-03
52	GO:0009750: response to fructose	4.42E-03
53	GO:0048765: root hair cell differentiation	4.42E-03
54	GO:0010015: root morphogenesis	4.42E-03
55	GO:0009698: phenylpropanoid metabolic process	4.42E-03
56	GO:0009773: photosynthetic electron transport in photosystem I	4.42E-03
57	GO:0005983: starch catabolic process	4.85E-03
58	GO:0016024: CDP-diacylglycerol biosynthetic process	4.85E-03
59	GO:0009718: anthocyanin-containing compound biosynthetic process	5.30E-03
60	GO:0005986: sucrose biosynthetic process	5.30E-03
61	GO:0010143: cutin biosynthetic process	5.76E-03
62	GO:0010030: positive regulation of seed germination	6.23E-03
63	GO:0009768: photosynthesis, light harvesting in photosystem I	7.73E-03
64	GO:0006418: tRNA aminoacylation for protein translation	7.73E-03
65	GO:0007017: microtubule-based process	7.73E-03
66	GO:0003333: amino acid transmembrane transport	8.26E-03
67	GO:0007165: signal transduction	8.29E-03
68	GO:0009737: response to abscisic acid	8.62E-03
69	GO:0009414: response to water deprivation	8.76E-03
70	GO:2000022: regulation of jasmonic acid mediated signaling pathway	8.79E-03
71	GO:0009734: auxin-activated signaling pathway	1.04E-02
72	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.05E-02
73	GO:0010087: phloem or xylem histogenesis	1.11E-02
74	GO:0042631: cellular response to water deprivation	1.11E-02
75	GO:0007623: circadian rhythm	1.17E-02
76	GO:0010197: polar nucleus fusion	1.17E-02
77	GO:0009958: positive gravitropism	1.17E-02
78	GO:0007018: microtubule-based movement	1.23E-02
79	GO:0010193: response to ozone	1.36E-02
80	GO:0009630: gravitropism	1.42E-02
81	GO:0010583: response to cyclopentenone	1.42E-02
82	GO:0009611: response to wounding	1.44E-02
83	GO:0030163: protein catabolic process	1.49E-02
84	GO:0071281: cellular response to iron ion	1.49E-02
85	GO:0071805: potassium ion transmembrane transport	1.62E-02
86	GO:0009658: chloroplast organization	1.82E-02
87	GO:0055085: transmembrane transport	1.89E-02
88	GO:0010411: xyloglucan metabolic process	1.98E-02
89	GO:0016311: dephosphorylation	2.05E-02
90	GO:0048481: plant ovule development	2.12E-02
91	GO:0000160: phosphorelay signal transduction system	2.20E-02
92	GO:0006865: amino acid transport	2.43E-02
93	GO:0009867: jasmonic acid mediated signaling pathway	2.51E-02
94	GO:0045454: cell redox homeostasis	2.70E-02
95	GO:0045892: negative regulation of transcription, DNA-templated	2.74E-02
96	GO:0009926: auxin polar transport	3.01E-02
97	GO:0042546: cell wall biogenesis	3.10E-02
98	GO:0006855: drug transmembrane transport	3.36E-02
99	GO:0031347: regulation of defense response	3.45E-02
100	GO:0009664: plant-type cell wall organization	3.54E-02
101	GO:0009753: response to jasmonic acid	3.56E-02
102	GO:0006364: rRNA processing	3.72E-02
103	GO:0009585: red, far-red light phototransduction	3.72E-02
104	GO:0006813: potassium ion transport	3.72E-02
105	GO:0051603: proteolysis involved in cellular protein catabolic process	3.82E-02
106	GO:0010224: response to UV-B	3.82E-02
107	GO:0009733: response to auxin	3.91E-02
108	GO:0006096: glycolytic process	4.19E-02
109	GO:0006508: proteolysis	4.77E-02
110	GO:0009624: response to nematode	4.78E-02
111	GO:0009409: response to cold	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
2	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
3	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
4	GO:0015250: water channel activity	6.19E-06
5	GO:0005528: FK506 binding	1.98E-05
6	GO:0047746: chlorophyllase activity	3.16E-04
7	GO:0016868: intramolecular transferase activity, phosphotransferases	3.16E-04
8	GO:0003839: gamma-glutamylcyclotransferase activity	3.16E-04
9	GO:0004047: aminomethyltransferase activity	3.16E-04
10	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	3.16E-04
11	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	3.16E-04
12	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.92E-04
13	GO:0002161: aminoacyl-tRNA editing activity	5.20E-04
14	GO:0010011: auxin binding	9.85E-04
15	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	9.85E-04
16	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	9.85E-04
17	GO:0010328: auxin influx transmembrane transporter activity	9.85E-04
18	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.53E-03
19	GO:0004332: fructose-bisphosphate aldolase activity	1.53E-03
20	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.53E-03
21	GO:0004559: alpha-mannosidase activity	1.83E-03
22	GO:0009881: photoreceptor activity	2.15E-03
23	GO:0005096: GTPase activator activity	2.29E-03
24	GO:0004185: serine-type carboxypeptidase activity	3.54E-03
25	GO:0000049: tRNA binding	4.85E-03
26	GO:0031072: heat shock protein binding	5.30E-03
27	GO:0000155: phosphorelay sensor kinase activity	5.30E-03
28	GO:0004565: beta-galactosidase activity	5.30E-03
29	GO:0004871: signal transducer activity	5.49E-03
30	GO:0008266: poly(U) RNA binding	5.76E-03
31	GO:0031409: pigment binding	6.71E-03
32	GO:0003714: transcription corepressor activity	7.22E-03
33	GO:0015079: potassium ion transmembrane transporter activity	7.73E-03
34	GO:0019843: rRNA binding	8.46E-03
35	GO:0016787: hydrolase activity	8.71E-03
36	GO:0004252: serine-type endopeptidase activity	9.39E-03
37	GO:0003756: protein disulfide isomerase activity	9.92E-03
38	GO:0004812: aminoacyl-tRNA ligase activity	1.05E-02
39	GO:0050662: coenzyme binding	1.23E-02
40	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.36E-02
41	GO:0048038: quinone binding	1.36E-02
42	GO:0004518: nuclease activity	1.42E-02
43	GO:0016791: phosphatase activity	1.55E-02
44	GO:0005200: structural constituent of cytoskeleton	1.62E-02
45	GO:0008483: transaminase activity	1.62E-02
46	GO:0016597: amino acid binding	1.69E-02
47	GO:0016168: chlorophyll binding	1.83E-02
48	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.98E-02
49	GO:0008236: serine-type peptidase activity	2.05E-02
50	GO:0015238: drug transmembrane transporter activity	2.20E-02
51	GO:0030145: manganese ion binding	2.36E-02
52	GO:0003993: acid phosphatase activity	2.60E-02
53	GO:0005515: protein binding	2.97E-02
54	GO:0051537: 2 iron, 2 sulfur cluster binding	3.19E-02
55	GO:0015293: symporter activity	3.27E-02
56	GO:0005215: transporter activity	3.84E-02
57	GO:0003777: microtubule motor activity	4.00E-02
58	GO:0015171: amino acid transmembrane transporter activity	4.00E-02
59	GO:0031625: ubiquitin protein ligase binding	4.00E-02
60	GO:0008289: lipid binding	4.61E-02
61	GO:0051082: unfolded protein binding	4.78E-02
62	GO:0016746: transferase activity, transferring acyl groups	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
2	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
3	GO:0009534: chloroplast thylakoid	5.49E-15
4	GO:0009507: chloroplast	2.45E-11
5	GO:0009543: chloroplast thylakoid lumen	6.04E-10
6	GO:0009535: chloroplast thylakoid membrane	7.74E-10
7	GO:0009570: chloroplast stroma	7.87E-08
8	GO:0009533: chloroplast stromal thylakoid	7.37E-07
9	GO:0030095: chloroplast photosystem II	1.13E-05
10	GO:0009941: chloroplast envelope	2.36E-05
11	GO:0009782: photosystem I antenna complex	1.37E-04
12	GO:0043674: columella	1.37E-04
13	GO:0009579: thylakoid	1.85E-04
14	GO:0031977: thylakoid lumen	3.63E-04
15	GO:0042651: thylakoid membrane	5.43E-04
16	GO:0009531: secondary cell wall	7.44E-04
17	GO:0009523: photosystem II	1.10E-03
18	GO:0016020: membrane	1.10E-03
19	GO:0005887: integral component of plasma membrane	2.07E-03
20	GO:0042807: central vacuole	2.15E-03
21	GO:0009986: cell surface	2.15E-03
22	GO:0008180: COP9 signalosome	3.22E-03
23	GO:0042644: chloroplast nucleoid	3.22E-03
24	GO:0045298: tubulin complex	3.22E-03
25	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.22E-03
26	GO:0009505: plant-type cell wall	3.42E-03
27	GO:0032040: small-subunit processome	4.85E-03
28	GO:0009508: plastid chromosome	5.30E-03
29	GO:0030076: light-harvesting complex	6.23E-03
30	GO:0048046: apoplast	7.18E-03
31	GO:0009654: photosystem II oxygen evolving complex	7.73E-03
32	GO:0010287: plastoglobule	8.02E-03
33	GO:0005871: kinesin complex	1.05E-02
34	GO:0009705: plant-type vacuole membrane	1.17E-02
35	GO:0019898: extrinsic component of membrane	1.29E-02
36	GO:0005773: vacuole	1.49E-02
37	GO:0009295: nucleoid	1.62E-02
38	GO:0019005: SCF ubiquitin ligase complex	2.12E-02
39	GO:0005874: microtubule	2.18E-02
40	GO:0015934: large ribosomal subunit	2.36E-02
41	GO:0000502: proteasome complex	3.72E-02
42	GO:0009706: chloroplast inner membrane	4.78E-02