GO Enrichment Analysis of Co-expressed Genes with
AT2G25840
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 2 | GO:0042407: cristae formation | 0.00E+00 |
| 3 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
| 4 | GO:1905499: trichome papilla formation | 0.00E+00 |
| 5 | GO:0018160: peptidyl-pyrromethane cofactor linkage | 0.00E+00 |
| 6 | GO:0070125: mitochondrial translational elongation | 0.00E+00 |
| 7 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 8 | GO:0015995: chlorophyll biosynthetic process | 1.41E-09 |
| 9 | GO:0006353: DNA-templated transcription, termination | 5.79E-07 |
| 10 | GO:0009658: chloroplast organization | 1.74E-06 |
| 11 | GO:0006782: protoporphyrinogen IX biosynthetic process | 2.25E-06 |
| 12 | GO:0051085: chaperone mediated protein folding requiring cofactor | 5.09E-06 |
| 13 | GO:1901259: chloroplast rRNA processing | 3.43E-05 |
| 14 | GO:0032544: plastid translation | 7.69E-05 |
| 15 | GO:0010027: thylakoid membrane organization | 8.29E-05 |
| 16 | GO:0006783: heme biosynthetic process | 9.49E-05 |
| 17 | GO:0006438: valyl-tRNA aminoacylation | 1.04E-04 |
| 18 | GO:0042371: vitamin K biosynthetic process | 1.04E-04 |
| 19 | GO:0006779: porphyrin-containing compound biosynthetic process | 1.15E-04 |
| 20 | GO:0006633: fatty acid biosynthetic process | 1.18E-04 |
| 21 | GO:0006423: cysteinyl-tRNA aminoacylation | 2.44E-04 |
| 22 | GO:2000071: regulation of defense response by callose deposition | 2.44E-04 |
| 23 | GO:0018026: peptidyl-lysine monomethylation | 2.44E-04 |
| 24 | GO:0008616: queuosine biosynthetic process | 2.44E-04 |
| 25 | GO:0006418: tRNA aminoacylation for protein translation | 3.76E-04 |
| 26 | GO:0090391: granum assembly | 4.05E-04 |
| 27 | GO:0051604: protein maturation | 4.05E-04 |
| 28 | GO:0015979: photosynthesis | 5.00E-04 |
| 29 | GO:0006986: response to unfolded protein | 5.82E-04 |
| 30 | GO:0010239: chloroplast mRNA processing | 5.82E-04 |
| 31 | GO:0006221: pyrimidine nucleotide biosynthetic process | 7.73E-04 |
| 32 | GO:0044205: 'de novo' UMP biosynthetic process | 7.73E-04 |
| 33 | GO:0015689: molybdate ion transport | 7.73E-04 |
| 34 | GO:0009790: embryo development | 9.16E-04 |
| 35 | GO:0048359: mucilage metabolic process involved in seed coat development | 9.77E-04 |
| 36 | GO:0010236: plastoquinone biosynthetic process | 9.77E-04 |
| 37 | GO:0006665: sphingolipid metabolic process | 9.77E-04 |
| 38 | GO:0006655: phosphatidylglycerol biosynthetic process | 1.19E-03 |
| 39 | GO:0042793: transcription from plastid promoter | 1.19E-03 |
| 40 | GO:0006086: acetyl-CoA biosynthetic process from pyruvate | 1.19E-03 |
| 41 | GO:0042026: protein refolding | 1.43E-03 |
| 42 | GO:0042372: phylloquinone biosynthetic process | 1.43E-03 |
| 43 | GO:0017148: negative regulation of translation | 1.43E-03 |
| 44 | GO:0048280: vesicle fusion with Golgi apparatus | 1.43E-03 |
| 45 | GO:0010019: chloroplast-nucleus signaling pathway | 1.43E-03 |
| 46 | GO:0009735: response to cytokinin | 1.52E-03 |
| 47 | GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process | 1.67E-03 |
| 48 | GO:0009772: photosynthetic electron transport in photosystem II | 1.67E-03 |
| 49 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 1.93E-03 |
| 50 | GO:0042255: ribosome assembly | 1.93E-03 |
| 51 | GO:0052543: callose deposition in cell wall | 1.93E-03 |
| 52 | GO:0015780: nucleotide-sugar transport | 2.49E-03 |
| 53 | GO:1900865: chloroplast RNA modification | 2.79E-03 |
| 54 | GO:0031425: chloroplast RNA processing | 2.79E-03 |
| 55 | GO:0042761: very long-chain fatty acid biosynthetic process | 2.79E-03 |
| 56 | GO:0043067: regulation of programmed cell death | 2.79E-03 |
| 57 | GO:0006896: Golgi to vacuole transport | 3.10E-03 |
| 58 | GO:0045036: protein targeting to chloroplast | 3.10E-03 |
| 59 | GO:0009682: induced systemic resistance | 3.42E-03 |
| 60 | GO:0006415: translational termination | 3.42E-03 |
| 61 | GO:0009089: lysine biosynthetic process via diaminopimelate | 3.42E-03 |
| 62 | GO:0016024: CDP-diacylglycerol biosynthetic process | 3.75E-03 |
| 63 | GO:0045037: protein import into chloroplast stroma | 3.75E-03 |
| 64 | GO:0010020: chloroplast fission | 4.44E-03 |
| 65 | GO:0009793: embryo development ending in seed dormancy | 5.11E-03 |
| 66 | GO:0010025: wax biosynthetic process | 5.18E-03 |
| 67 | GO:0007017: microtubule-based process | 5.95E-03 |
| 68 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 6.76E-03 |
| 69 | GO:0007005: mitochondrion organization | 6.76E-03 |
| 70 | GO:0010091: trichome branching | 7.61E-03 |
| 71 | GO:0042147: retrograde transport, endosome to Golgi | 8.05E-03 |
| 72 | GO:0016117: carotenoid biosynthetic process | 8.05E-03 |
| 73 | GO:0042335: cuticle development | 8.49E-03 |
| 74 | GO:0008033: tRNA processing | 8.49E-03 |
| 75 | GO:0010118: stomatal movement | 8.49E-03 |
| 76 | GO:0010197: polar nucleus fusion | 8.95E-03 |
| 77 | GO:0009741: response to brassinosteroid | 8.95E-03 |
| 78 | GO:0006623: protein targeting to vacuole | 9.90E-03 |
| 79 | GO:0008654: phospholipid biosynthetic process | 9.90E-03 |
| 80 | GO:0002229: defense response to oomycetes | 1.04E-02 |
| 81 | GO:0006891: intra-Golgi vesicle-mediated transport | 1.04E-02 |
| 82 | GO:0032502: developmental process | 1.09E-02 |
| 83 | GO:0006457: protein folding | 1.20E-02 |
| 84 | GO:0000910: cytokinesis | 1.29E-02 |
| 85 | GO:0009627: systemic acquired resistance | 1.45E-02 |
| 86 | GO:0006888: ER to Golgi vesicle-mediated transport | 1.51E-02 |
| 87 | GO:0008219: cell death | 1.62E-02 |
| 88 | GO:0009867: jasmonic acid mediated signaling pathway | 1.92E-02 |
| 89 | GO:0042742: defense response to bacterium | 2.11E-02 |
| 90 | GO:0008643: carbohydrate transport | 2.43E-02 |
| 91 | GO:0008152: metabolic process | 2.51E-02 |
| 92 | GO:0031347: regulation of defense response | 2.64E-02 |
| 93 | GO:0006096: glycolytic process | 3.20E-02 |
| 94 | GO:0009620: response to fungus | 3.43E-02 |
| 95 | GO:0051726: regulation of cell cycle | 3.81E-02 |
| 96 | GO:0009742: brassinosteroid mediated signaling pathway | 3.81E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding | 0.00E+00 |
| 2 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 3 | GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity | 0.00E+00 |
| 4 | GO:0004151: dihydroorotase activity | 0.00E+00 |
| 5 | GO:0004418: hydroxymethylbilane synthase activity | 0.00E+00 |
| 6 | GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity | 0.00E+00 |
| 7 | GO:0009974: zeinoxanthin epsilon hydroxylase activity | 0.00E+00 |
| 8 | GO:0016851: magnesium chelatase activity | 5.09E-06 |
| 9 | GO:0004853: uroporphyrinogen decarboxylase activity | 1.04E-04 |
| 10 | GO:0009374: biotin binding | 1.04E-04 |
| 11 | GO:0004832: valine-tRNA ligase activity | 1.04E-04 |
| 12 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 1.04E-04 |
| 13 | GO:0030794: (S)-coclaurine-N-methyltransferase activity | 1.04E-04 |
| 14 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 1.04E-04 |
| 15 | GO:0016630: protochlorophyllide reductase activity | 2.44E-04 |
| 16 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 2.44E-04 |
| 17 | GO:0004312: fatty acid synthase activity | 2.44E-04 |
| 18 | GO:0004817: cysteine-tRNA ligase activity | 2.44E-04 |
| 19 | GO:0008479: queuine tRNA-ribosyltransferase activity | 2.44E-04 |
| 20 | GO:0070402: NADPH binding | 4.05E-04 |
| 21 | GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity | 4.05E-04 |
| 22 | GO:0051082: unfolded protein binding | 5.72E-04 |
| 23 | GO:0004812: aminoacyl-tRNA ligase activity | 5.78E-04 |
| 24 | GO:0016149: translation release factor activity, codon specific | 5.82E-04 |
| 25 | GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity | 5.82E-04 |
| 26 | GO:0043023: ribosomal large subunit binding | 5.82E-04 |
| 27 | GO:0001872: (1->3)-beta-D-glucan binding | 5.82E-04 |
| 28 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 5.82E-04 |
| 29 | GO:0015098: molybdate ion transmembrane transporter activity | 7.73E-04 |
| 30 | GO:0004659: prenyltransferase activity | 7.73E-04 |
| 31 | GO:0016279: protein-lysine N-methyltransferase activity | 7.73E-04 |
| 32 | GO:0004040: amidase activity | 9.77E-04 |
| 33 | GO:0003959: NADPH dehydrogenase activity | 9.77E-04 |
| 34 | GO:0003989: acetyl-CoA carboxylase activity | 9.77E-04 |
| 35 | GO:0009922: fatty acid elongase activity | 9.77E-04 |
| 36 | GO:0004605: phosphatidate cytidylyltransferase activity | 1.19E-03 |
| 37 | GO:0016831: carboxy-lyase activity | 1.67E-03 |
| 38 | GO:0003746: translation elongation factor activity | 1.90E-03 |
| 39 | GO:0003747: translation release factor activity | 2.49E-03 |
| 40 | GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors | 2.49E-03 |
| 41 | GO:0044183: protein binding involved in protein folding | 3.42E-03 |
| 42 | GO:0031072: heat shock protein binding | 4.09E-03 |
| 43 | GO:0019843: rRNA binding | 5.80E-03 |
| 44 | GO:0051087: chaperone binding | 5.95E-03 |
| 45 | GO:0004176: ATP-dependent peptidase activity | 6.35E-03 |
| 46 | GO:0008565: protein transporter activity | 6.93E-03 |
| 47 | GO:0016887: ATPase activity | 7.28E-03 |
| 48 | GO:0003727: single-stranded RNA binding | 7.61E-03 |
| 49 | GO:0008514: organic anion transmembrane transporter activity | 7.61E-03 |
| 50 | GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity | 8.95E-03 |
| 51 | GO:0003729: mRNA binding | 9.31E-03 |
| 52 | GO:0008483: transaminase activity | 1.24E-02 |
| 53 | GO:0008237: metallopeptidase activity | 1.24E-02 |
| 54 | GO:0005200: structural constituent of cytoskeleton | 1.24E-02 |
| 55 | GO:0003723: RNA binding | 1.50E-02 |
| 56 | GO:0030247: polysaccharide binding | 1.51E-02 |
| 57 | GO:0008236: serine-type peptidase activity | 1.57E-02 |
| 58 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.62E-02 |
| 59 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 1.74E-02 |
| 60 | GO:0000149: SNARE binding | 2.04E-02 |
| 61 | GO:0005484: SNAP receptor activity | 2.30E-02 |
| 62 | GO:0043621: protein self-association | 2.43E-02 |
| 63 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.57E-02 |
| 64 | GO:0003690: double-stranded DNA binding | 2.91E-02 |
| 65 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 3.28E-02 |
| 66 | GO:0016758: transferase activity, transferring hexosyl groups | 4.21E-02 |
| 67 | GO:0030170: pyridoxal phosphate binding | 4.62E-02 |
| 68 | GO:0016740: transferase activity | 4.90E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 6.46E-41 |
| 2 | GO:0009941: chloroplast envelope | 7.82E-26 |
| 3 | GO:0009570: chloroplast stroma | 2.76E-25 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 1.04E-08 |
| 5 | GO:0009536: plastid | 7.57E-08 |
| 6 | GO:0009579: thylakoid | 8.08E-06 |
| 7 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 1.04E-04 |
| 8 | GO:0009923: fatty acid elongase complex | 1.04E-04 |
| 9 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 2.44E-04 |
| 10 | GO:0009654: photosystem II oxygen evolving complex | 3.76E-04 |
| 11 | GO:0010007: magnesium chelatase complex | 4.05E-04 |
| 12 | GO:0009317: acetyl-CoA carboxylase complex | 4.05E-04 |
| 13 | GO:0031969: chloroplast membrane | 4.07E-04 |
| 14 | GO:0009526: plastid envelope | 7.73E-04 |
| 15 | GO:0055035: plastid thylakoid membrane | 9.77E-04 |
| 16 | GO:0009707: chloroplast outer membrane | 1.51E-03 |
| 17 | GO:0012507: ER to Golgi transport vesicle membrane | 1.93E-03 |
| 18 | GO:0009539: photosystem II reaction center | 2.21E-03 |
| 19 | GO:0045298: tubulin complex | 2.49E-03 |
| 20 | GO:0009508: plastid chromosome | 4.09E-03 |
| 21 | GO:0009706: chloroplast inner membrane | 4.64E-03 |
| 22 | GO:0009543: chloroplast thylakoid lumen | 5.80E-03 |
| 23 | GO:0042651: thylakoid membrane | 5.95E-03 |
| 24 | GO:0005623: cell | 5.95E-03 |
| 25 | GO:0005759: mitochondrial matrix | 7.28E-03 |
| 26 | GO:0009504: cell plate | 9.90E-03 |
| 27 | GO:0019898: extrinsic component of membrane | 9.90E-03 |
| 28 | GO:0016592: mediator complex | 1.09E-02 |
| 29 | GO:0009534: chloroplast thylakoid | 1.10E-02 |
| 30 | GO:0009295: nucleoid | 1.24E-02 |
| 31 | GO:0010319: stromule | 1.24E-02 |
| 32 | GO:0030529: intracellular ribonucleoprotein complex | 1.35E-02 |
| 33 | GO:0031902: late endosome membrane | 2.17E-02 |
| 34 | GO:0031977: thylakoid lumen | 2.17E-02 |
| 35 | GO:0031201: SNARE complex | 2.17E-02 |
| 36 | GO:0022626: cytosolic ribosome | 3.86E-02 |