GO Enrichment Analysis of Co-expressed Genes with
AT2G25080
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:2000505: regulation of energy homeostasis | 0.00E+00 |
| 2 | GO:0033494: ferulate metabolic process | 0.00E+00 |
| 3 | GO:2000121: regulation of removal of superoxide radicals | 0.00E+00 |
| 4 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 5 | GO:0005996: monosaccharide metabolic process | 0.00E+00 |
| 6 | GO:0015979: photosynthesis | 6.73E-16 |
| 7 | GO:0009773: photosynthetic electron transport in photosystem I | 2.43E-11 |
| 8 | GO:0009735: response to cytokinin | 7.50E-10 |
| 9 | GO:0015976: carbon utilization | 2.10E-07 |
| 10 | GO:0009768: photosynthesis, light harvesting in photosystem I | 2.14E-06 |
| 11 | GO:0042742: defense response to bacterium | 4.87E-06 |
| 12 | GO:0080170: hydrogen peroxide transmembrane transport | 2.04E-05 |
| 13 | GO:0010207: photosystem II assembly | 3.64E-05 |
| 14 | GO:0045727: positive regulation of translation | 3.72E-05 |
| 15 | GO:2000122: negative regulation of stomatal complex development | 3.72E-05 |
| 16 | GO:0010037: response to carbon dioxide | 3.72E-05 |
| 17 | GO:0018298: protein-chromophore linkage | 4.61E-05 |
| 18 | GO:0042549: photosystem II stabilization | 8.74E-05 |
| 19 | GO:0009409: response to cold | 9.11E-05 |
| 20 | GO:0034220: ion transmembrane transport | 1.55E-04 |
| 21 | GO:0009772: photosynthetic electron transport in photosystem II | 1.59E-04 |
| 22 | GO:0010196: nonphotochemical quenching | 1.59E-04 |
| 23 | GO:0015986: ATP synthesis coupled proton transport | 1.92E-04 |
| 24 | GO:0006106: fumarate metabolic process | 2.29E-04 |
| 25 | GO:0034337: RNA folding | 2.29E-04 |
| 26 | GO:0071588: hydrogen peroxide mediated signaling pathway | 2.29E-04 |
| 27 | GO:0010729: positive regulation of hydrogen peroxide biosynthetic process | 2.29E-04 |
| 28 | GO:0071370: cellular response to gibberellin stimulus | 2.29E-04 |
| 29 | GO:0000481: maturation of 5S rRNA | 2.29E-04 |
| 30 | GO:0032544: plastid translation | 2.51E-04 |
| 31 | GO:0010206: photosystem II repair | 3.04E-04 |
| 32 | GO:0006810: transport | 4.66E-04 |
| 33 | GO:0018119: peptidyl-cysteine S-nitrosylation | 4.90E-04 |
| 34 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 5.10E-04 |
| 35 | GO:0010218: response to far red light | 6.09E-04 |
| 36 | GO:0006006: glucose metabolic process | 6.36E-04 |
| 37 | GO:0010143: cutin biosynthetic process | 7.15E-04 |
| 38 | GO:0019253: reductive pentose-phosphate cycle | 7.15E-04 |
| 39 | GO:0009637: response to blue light | 7.25E-04 |
| 40 | GO:0005985: sucrose metabolic process | 8.00E-04 |
| 41 | GO:0006000: fructose metabolic process | 8.29E-04 |
| 42 | GO:0006518: peptide metabolic process | 8.29E-04 |
| 43 | GO:0045493: xylan catabolic process | 8.29E-04 |
| 44 | GO:0006833: water transport | 8.89E-04 |
| 45 | GO:0010114: response to red light | 9.94E-04 |
| 46 | GO:0046836: glycolipid transport | 1.18E-03 |
| 47 | GO:0051513: regulation of monopolar cell growth | 1.18E-03 |
| 48 | GO:0071484: cellular response to light intensity | 1.18E-03 |
| 49 | GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity | 1.18E-03 |
| 50 | GO:1901332: negative regulation of lateral root development | 1.18E-03 |
| 51 | GO:0010109: regulation of photosynthesis | 1.57E-03 |
| 52 | GO:0019464: glycine decarboxylation via glycine cleavage system | 1.57E-03 |
| 53 | GO:0009765: photosynthesis, light harvesting | 1.57E-03 |
| 54 | GO:0015994: chlorophyll metabolic process | 1.57E-03 |
| 55 | GO:0030104: water homeostasis | 1.57E-03 |
| 56 | GO:0006546: glycine catabolic process | 1.57E-03 |
| 57 | GO:0006461: protein complex assembly | 2.01E-03 |
| 58 | GO:0034052: positive regulation of plant-type hypersensitive response | 2.01E-03 |
| 59 | GO:0032543: mitochondrial translation | 2.01E-03 |
| 60 | GO:0000302: response to reactive oxygen species | 2.36E-03 |
| 61 | GO:1902456: regulation of stomatal opening | 2.48E-03 |
| 62 | GO:0010019: chloroplast-nucleus signaling pathway | 2.97E-03 |
| 63 | GO:0009769: photosynthesis, light harvesting in photosystem II | 3.50E-03 |
| 64 | GO:0009645: response to low light intensity stimulus | 3.50E-03 |
| 65 | GO:0042128: nitrate assimilation | 3.80E-03 |
| 66 | GO:0015995: chlorophyll biosynthetic process | 4.01E-03 |
| 67 | GO:0010492: maintenance of shoot apical meristem identity | 4.06E-03 |
| 68 | GO:0008610: lipid biosynthetic process | 4.06E-03 |
| 69 | GO:0046620: regulation of organ growth | 4.06E-03 |
| 70 | GO:0030091: protein repair | 4.06E-03 |
| 71 | GO:0043068: positive regulation of programmed cell death | 4.06E-03 |
| 72 | GO:0032508: DNA duplex unwinding | 4.06E-03 |
| 73 | GO:0009817: defense response to fungus, incompatible interaction | 4.44E-03 |
| 74 | GO:0006002: fructose 6-phosphate metabolic process | 4.65E-03 |
| 75 | GO:0009657: plastid organization | 4.65E-03 |
| 76 | GO:0009631: cold acclimation | 5.13E-03 |
| 77 | GO:0010119: regulation of stomatal movement | 5.13E-03 |
| 78 | GO:0009051: pentose-phosphate shunt, oxidative branch | 5.27E-03 |
| 79 | GO:0048507: meristem development | 5.27E-03 |
| 80 | GO:0090305: nucleic acid phosphodiester bond hydrolysis | 5.27E-03 |
| 81 | GO:0006754: ATP biosynthetic process | 5.27E-03 |
| 82 | GO:0034599: cellular response to oxidative stress | 5.88E-03 |
| 83 | GO:0006949: syncytium formation | 6.58E-03 |
| 84 | GO:0009299: mRNA transcription | 6.58E-03 |
| 85 | GO:0010015: root morphogenesis | 7.28E-03 |
| 86 | GO:0009698: phenylpropanoid metabolic process | 7.28E-03 |
| 87 | GO:0019684: photosynthesis, light reaction | 7.28E-03 |
| 88 | GO:0009089: lysine biosynthetic process via diaminopimelate | 7.28E-03 |
| 89 | GO:0000272: polysaccharide catabolic process | 7.28E-03 |
| 90 | GO:0009750: response to fructose | 7.28E-03 |
| 91 | GO:0016024: CDP-diacylglycerol biosynthetic process | 8.00E-03 |
| 92 | GO:0042254: ribosome biogenesis | 8.05E-03 |
| 93 | GO:0009725: response to hormone | 8.75E-03 |
| 94 | GO:0006094: gluconeogenesis | 8.75E-03 |
| 95 | GO:0005986: sucrose biosynthetic process | 8.75E-03 |
| 96 | GO:0006108: malate metabolic process | 8.75E-03 |
| 97 | GO:0009664: plant-type cell wall organization | 9.11E-03 |
| 98 | GO:0006364: rRNA processing | 9.78E-03 |
| 99 | GO:0055114: oxidation-reduction process | 1.01E-02 |
| 100 | GO:0006636: unsaturated fatty acid biosynthetic process | 1.11E-02 |
| 101 | GO:0007017: microtubule-based process | 1.28E-02 |
| 102 | GO:0045454: cell redox homeostasis | 1.30E-02 |
| 103 | GO:0009740: gibberellic acid mediated signaling pathway | 1.31E-02 |
| 104 | GO:0048511: rhythmic process | 1.37E-02 |
| 105 | GO:0009269: response to desiccation | 1.37E-02 |
| 106 | GO:0019748: secondary metabolic process | 1.46E-02 |
| 107 | GO:0009814: defense response, incompatible interaction | 1.46E-02 |
| 108 | GO:0006012: galactose metabolic process | 1.56E-02 |
| 109 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.56E-02 |
| 110 | GO:0032259: methylation | 1.61E-02 |
| 111 | GO:0042631: cellular response to water deprivation | 1.85E-02 |
| 112 | GO:0080022: primary root development | 1.85E-02 |
| 113 | GO:0000413: protein peptidyl-prolyl isomerization | 1.85E-02 |
| 114 | GO:0042744: hydrogen peroxide catabolic process | 1.99E-02 |
| 115 | GO:0042752: regulation of circadian rhythm | 2.05E-02 |
| 116 | GO:0009749: response to glucose | 2.16E-02 |
| 117 | GO:0002229: defense response to oomycetes | 2.27E-02 |
| 118 | GO:0010193: response to ozone | 2.27E-02 |
| 119 | GO:0007623: circadian rhythm | 2.42E-02 |
| 120 | GO:1901657: glycosyl compound metabolic process | 2.48E-02 |
| 121 | GO:0009828: plant-type cell wall loosening | 2.60E-02 |
| 122 | GO:0010468: regulation of gene expression | 2.89E-02 |
| 123 | GO:0009627: systemic acquired resistance | 3.19E-02 |
| 124 | GO:0010411: xyloglucan metabolic process | 3.31E-02 |
| 125 | GO:0009826: unidimensional cell growth | 3.60E-02 |
| 126 | GO:0010311: lateral root formation | 3.68E-02 |
| 127 | GO:0009658: chloroplast organization | 3.74E-02 |
| 128 | GO:0009407: toxin catabolic process | 3.81E-02 |
| 129 | GO:0006099: tricarboxylic acid cycle | 4.34E-02 |
| 130 | GO:0080167: response to karrikin | 4.62E-02 |
| 131 | GO:0030001: metal ion transport | 4.62E-02 |
| 132 | GO:0005975: carbohydrate metabolic process | 4.92E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 2 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 3 | GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity | 0.00E+00 |
| 4 | GO:0061634: alpha-D-xyloside xylohydrolase | 0.00E+00 |
| 5 | GO:0080176: xyloglucan 1,6-alpha-xylosidase activity | 0.00E+00 |
| 6 | GO:0031409: pigment binding | 1.33E-06 |
| 7 | GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity | 2.46E-06 |
| 8 | GO:0019843: rRNA binding | 4.79E-06 |
| 9 | GO:0004089: carbonate dehydratase activity | 2.98E-05 |
| 10 | GO:0016168: chlorophyll binding | 3.04E-05 |
| 11 | GO:0004130: cytochrome-c peroxidase activity | 8.74E-05 |
| 12 | GO:0051920: peroxiredoxin activity | 1.21E-04 |
| 13 | GO:0016209: antioxidant activity | 2.03E-04 |
| 14 | GO:0004333: fumarate hydratase activity | 2.29E-04 |
| 15 | GO:0015250: water channel activity | 3.82E-04 |
| 16 | GO:0047746: chlorophyllase activity | 5.10E-04 |
| 17 | GO:0042389: omega-3 fatty acid desaturase activity | 5.10E-04 |
| 18 | GO:0016868: intramolecular transferase activity, phosphotransferases | 5.10E-04 |
| 19 | GO:0010297: heteropolysaccharide binding | 5.10E-04 |
| 20 | GO:0043425: bHLH transcription factor binding | 5.10E-04 |
| 21 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 5.10E-04 |
| 22 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 5.10E-04 |
| 23 | GO:0008967: phosphoglycolate phosphatase activity | 5.10E-04 |
| 24 | GO:0008825: cyclopropane-fatty-acyl-phospholipid synthase activity | 5.10E-04 |
| 25 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 5.10E-04 |
| 26 | GO:0008266: poly(U) RNA binding | 7.15E-04 |
| 27 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 8.29E-04 |
| 28 | GO:0004324: ferredoxin-NADP+ reductase activity | 8.29E-04 |
| 29 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 8.29E-04 |
| 30 | GO:0050734: hydroxycinnamoyltransferase activity | 8.29E-04 |
| 31 | GO:0005528: FK506 binding | 9.81E-04 |
| 32 | GO:0004185: serine-type carboxypeptidase activity | 9.94E-04 |
| 33 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.10E-03 |
| 34 | GO:0017089: glycolipid transporter activity | 1.18E-03 |
| 35 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 1.18E-03 |
| 36 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.20E-03 |
| 37 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 1.57E-03 |
| 38 | GO:0051861: glycolipid binding | 1.57E-03 |
| 39 | GO:0009044: xylan 1,4-beta-xylosidase activity | 1.57E-03 |
| 40 | GO:0046556: alpha-L-arabinofuranosidase activity | 1.57E-03 |
| 41 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 1.92E-03 |
| 42 | GO:0003959: NADPH dehydrogenase activity | 2.01E-03 |
| 43 | GO:0050662: coenzyme binding | 2.06E-03 |
| 44 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 2.48E-03 |
| 45 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 2.48E-03 |
| 46 | GO:0016688: L-ascorbate peroxidase activity | 2.48E-03 |
| 47 | GO:0033743: peptide-methionine (R)-S-oxide reductase activity | 2.97E-03 |
| 48 | GO:0004017: adenylate kinase activity | 2.97E-03 |
| 49 | GO:0004564: beta-fructofuranosidase activity | 4.06E-03 |
| 50 | GO:0004034: aldose 1-epimerase activity | 4.06E-03 |
| 51 | GO:0015078: hydrogen ion transmembrane transporter activity | 4.65E-03 |
| 52 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 4.65E-03 |
| 53 | GO:0004575: sucrose alpha-glucosidase activity | 5.91E-03 |
| 54 | GO:0050661: NADP binding | 6.41E-03 |
| 55 | GO:0030234: enzyme regulator activity | 6.58E-03 |
| 56 | GO:0004601: peroxidase activity | 7.86E-03 |
| 57 | GO:0031072: heat shock protein binding | 8.75E-03 |
| 58 | GO:0003735: structural constituent of ribosome | 9.21E-03 |
| 59 | GO:0004707: MAP kinase activity | 1.37E-02 |
| 60 | GO:0004176: ATP-dependent peptidase activity | 1.37E-02 |
| 61 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 1.43E-02 |
| 62 | GO:0030570: pectate lyase activity | 1.56E-02 |
| 63 | GO:0003756: protein disulfide isomerase activity | 1.65E-02 |
| 64 | GO:0016853: isomerase activity | 2.05E-02 |
| 65 | GO:0004518: nuclease activity | 2.37E-02 |
| 66 | GO:0005509: calcium ion binding | 2.39E-02 |
| 67 | GO:0008289: lipid binding | 2.57E-02 |
| 68 | GO:0016791: phosphatase activity | 2.60E-02 |
| 69 | GO:0005200: structural constituent of cytoskeleton | 2.71E-02 |
| 70 | GO:0102483: scopolin beta-glucosidase activity | 3.31E-02 |
| 71 | GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding | 3.43E-02 |
| 72 | GO:0005096: GTPase activator activity | 3.68E-02 |
| 73 | GO:0004222: metalloendopeptidase activity | 3.81E-02 |
| 74 | GO:0016788: hydrolase activity, acting on ester bonds | 3.81E-02 |
| 75 | GO:0003993: acid phosphatase activity | 4.34E-02 |
| 76 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 4.34E-02 |
| 77 | GO:0008422: beta-glucosidase activity | 4.48E-02 |
| 78 | GO:0004364: glutathione transferase activity | 4.90E-02 |
| 79 | GO:0030246: carbohydrate binding | 4.99E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0098572: stromal side of plastid thylakoid membrane | 0.00E+00 |
| 2 | GO:0005943: phosphatidylinositol 3-kinase complex, class IA | 0.00E+00 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 5.80E-41 |
| 4 | GO:0009507: chloroplast | 4.93E-40 |
| 5 | GO:0009534: chloroplast thylakoid | 3.39E-37 |
| 6 | GO:0009941: chloroplast envelope | 6.22E-26 |
| 7 | GO:0009579: thylakoid | 7.35E-25 |
| 8 | GO:0009570: chloroplast stroma | 2.13E-20 |
| 9 | GO:0009543: chloroplast thylakoid lumen | 1.23E-14 |
| 10 | GO:0010287: plastoglobule | 1.13E-11 |
| 11 | GO:0030095: chloroplast photosystem II | 1.05E-10 |
| 12 | GO:0010319: stromule | 1.87E-08 |
| 13 | GO:0031977: thylakoid lumen | 2.49E-07 |
| 14 | GO:0009523: photosystem II | 3.09E-07 |
| 15 | GO:0048046: apoplast | 1.42E-06 |
| 16 | GO:0009654: photosystem II oxygen evolving complex | 2.14E-06 |
| 17 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 8.23E-06 |
| 18 | GO:0009522: photosystem I | 9.41E-06 |
| 19 | GO:0019898: extrinsic component of membrane | 1.09E-05 |
| 20 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 8.74E-05 |
| 21 | GO:0009538: photosystem I reaction center | 2.03E-04 |
| 22 | GO:0045239: tricarboxylic acid cycle enzyme complex | 2.29E-04 |
| 23 | GO:0043674: columella | 2.29E-04 |
| 24 | GO:0009783: photosystem II antenna complex | 2.29E-04 |
| 25 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 5.10E-04 |
| 26 | GO:0030093: chloroplast photosystem I | 5.10E-04 |
| 27 | GO:0042170: plastid membrane | 5.10E-04 |
| 28 | GO:0016020: membrane | 5.94E-04 |
| 29 | GO:0009508: plastid chromosome | 6.36E-04 |
| 30 | GO:0005840: ribosome | 7.50E-04 |
| 31 | GO:0030076: light-harvesting complex | 8.00E-04 |
| 32 | GO:0042651: thylakoid membrane | 1.08E-03 |
| 33 | GO:0009531: secondary cell wall | 1.18E-03 |
| 34 | GO:0005775: vacuolar lumen | 1.18E-03 |
| 35 | GO:0005960: glycine cleavage complex | 1.18E-03 |
| 36 | GO:0009517: PSII associated light-harvesting complex II | 1.57E-03 |
| 37 | GO:0009544: chloroplast ATP synthase complex | 1.57E-03 |
| 38 | GO:0009706: chloroplast inner membrane | 2.25E-03 |
| 39 | GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o) | 2.48E-03 |
| 40 | GO:0009295: nucleoid | 3.04E-03 |
| 41 | GO:0009533: chloroplast stromal thylakoid | 3.50E-03 |
| 42 | GO:0042807: central vacuole | 3.50E-03 |
| 43 | GO:0009505: plant-type cell wall | 3.73E-03 |
| 44 | GO:0042644: chloroplast nucleoid | 5.27E-03 |
| 45 | GO:0045298: tubulin complex | 5.27E-03 |
| 46 | GO:0032040: small-subunit processome | 8.00E-03 |
| 47 | GO:0005618: cell wall | 1.34E-02 |
| 48 | GO:0015935: small ribosomal subunit | 1.37E-02 |
| 49 | GO:0005773: vacuole | 2.45E-02 |
| 50 | GO:0005887: integral component of plasma membrane | 2.49E-02 |
| 51 | GO:0015934: large ribosomal subunit | 3.94E-02 |
| 52 | GO:0000325: plant-type vacuole | 3.94E-02 |
| 53 | GO:0031969: chloroplast membrane | 4.62E-02 |
| 54 | GO:0031902: late endosome membrane | 4.76E-02 |