co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G24150

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042493: response to drug	0.00E+00
2	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
3	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
4	GO:0015995: chlorophyll biosynthetic process	5.31E-11
5	GO:0015979: photosynthesis	1.61E-09
6	GO:0090391: granum assembly	3.08E-06
7	GO:0010207: photosystem II assembly	9.46E-06
8	GO:0010196: nonphotochemical quenching	6.38E-05
9	GO:0010027: thylakoid membrane organization	1.24E-04
10	GO:0071277: cellular response to calcium ion	1.27E-04
11	GO:0042371: vitamin K biosynthetic process	1.27E-04
12	GO:1902458: positive regulation of stomatal opening	1.27E-04
13	GO:0009773: photosynthetic electron transport in photosystem I	2.14E-04
14	GO:1903426: regulation of reactive oxygen species biosynthetic process	2.94E-04
15	GO:0080040: positive regulation of cellular response to phosphate starvation	2.94E-04
16	GO:0042254: ribosome biogenesis	4.61E-04
17	GO:0009650: UV protection	6.95E-04
18	GO:0010731: protein glutathionylation	6.95E-04
19	GO:0000413: protein peptidyl-prolyl isomerization	8.09E-04
20	GO:0042335: cuticle development	8.09E-04
21	GO:2000122: negative regulation of stomatal complex development	9.21E-04
22	GO:0006021: inositol biosynthetic process	9.21E-04
23	GO:0010037: response to carbon dioxide	9.21E-04
24	GO:0015976: carbon utilization	9.21E-04
25	GO:0009765: photosynthesis, light harvesting	9.21E-04
26	GO:0010236: plastoquinone biosynthetic process	1.16E-03
27	GO:0045038: protein import into chloroplast thylakoid membrane	1.16E-03
28	GO:0031365: N-terminal protein amino acid modification	1.16E-03
29	GO:0016123: xanthophyll biosynthetic process	1.16E-03
30	GO:0016120: carotene biosynthetic process	1.16E-03
31	GO:0046855: inositol phosphate dephosphorylation	1.43E-03
32	GO:0042372: phylloquinone biosynthetic process	1.71E-03
33	GO:0010189: vitamin E biosynthetic process	1.71E-03
34	GO:0010555: response to mannitol	1.71E-03
35	GO:0071470: cellular response to osmotic stress	1.71E-03
36	GO:0006400: tRNA modification	2.01E-03
37	GO:0009772: photosynthetic electron transport in photosystem II	2.01E-03
38	GO:0009704: de-etiolation	2.32E-03
39	GO:2000070: regulation of response to water deprivation	2.32E-03
40	GO:0009735: response to cytokinin	2.32E-03
41	GO:0009819: drought recovery	2.32E-03
42	GO:0009642: response to light intensity	2.32E-03
43	GO:0015996: chlorophyll catabolic process	2.65E-03
44	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	2.65E-03
45	GO:0007186: G-protein coupled receptor signaling pathway	2.65E-03
46	GO:0090333: regulation of stomatal closure	3.00E-03
47	GO:0006783: heme biosynthetic process	3.00E-03
48	GO:0006779: porphyrin-containing compound biosynthetic process	3.36E-03
49	GO:0006782: protoporphyrinogen IX biosynthetic process	3.73E-03
50	GO:0006412: translation	3.96E-03
51	GO:0006790: sulfur compound metabolic process	4.52E-03
52	GO:0045037: protein import into chloroplast stroma	4.52E-03
53	GO:0010628: positive regulation of gene expression	4.93E-03
54	GO:0019853: L-ascorbic acid biosynthetic process	5.80E-03
55	GO:0046854: phosphatidylinositol phosphorylation	5.80E-03
56	GO:0010167: response to nitrate	5.80E-03
57	GO:0019344: cysteine biosynthetic process	6.71E-03
58	GO:0000027: ribosomal large subunit assembly	6.71E-03
59	GO:0007017: microtubule-based process	7.19E-03
60	GO:0061077: chaperone-mediated protein folding	7.68E-03
61	GO:0009411: response to UV	8.69E-03
62	GO:0006633: fatty acid biosynthetic process	9.58E-03
63	GO:0016117: carotenoid biosynthetic process	9.75E-03
64	GO:0008360: regulation of cell shape	1.09E-02
65	GO:0010182: sugar mediated signaling pathway	1.09E-02
66	GO:0010583: response to cyclopentenone	1.32E-02
67	GO:1901657: glycosyl compound metabolic process	1.38E-02
68	GO:0055114: oxidation-reduction process	1.63E-02
69	GO:0009627: systemic acquired resistance	1.77E-02
70	GO:0042128: nitrate assimilation	1.77E-02
71	GO:0010411: xyloglucan metabolic process	1.83E-02
72	GO:0009817: defense response to fungus, incompatible interaction	1.97E-02
73	GO:0080167: response to karrikin	2.03E-02
74	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.10E-02
75	GO:0009834: plant-type secondary cell wall biogenesis	2.11E-02
76	GO:0010119: regulation of stomatal movement	2.19E-02
77	GO:0007165: signal transduction	2.33E-02
78	GO:0034599: cellular response to oxidative stress	2.41E-02
79	GO:0045454: cell redox homeostasis	2.43E-02
80	GO:0030001: metal ion transport	2.56E-02
81	GO:0006869: lipid transport	2.66E-02
82	GO:0042546: cell wall biogenesis	2.88E-02
83	GO:0016042: lipid catabolic process	2.91E-02
84	GO:0006508: proteolysis	4.11E-02
85	GO:0009742: brassinosteroid mediated signaling pathway	4.63E-02
86	GO:0005975: carbohydrate metabolic process	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0045550: geranylgeranyl reductase activity	0.00E+00
2	GO:0048307: ferredoxin-nitrite reductase activity	0.00E+00
3	GO:0050421: nitrite reductase (NO-forming) activity	0.00E+00
4	GO:0047889: ferredoxin-nitrate reductase activity	0.00E+00
5	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
6	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
7	GO:0090711: FMN hydrolase activity	0.00E+00
8	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
9	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
10	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
11	GO:0016851: magnesium chelatase activity	7.24E-06
12	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.31E-05
13	GO:0051920: peroxiredoxin activity	4.74E-05
14	GO:0016209: antioxidant activity	8.26E-05
15	GO:0009374: biotin binding	1.27E-04
16	GO:0019843: rRNA binding	1.27E-04
17	GO:0010347: L-galactose-1-phosphate phosphatase activity	1.27E-04
18	GO:0030794: (S)-coclaurine-N-methyltransferase activity	1.27E-04
19	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.27E-04
20	GO:0016630: protochlorophyllide reductase activity	2.94E-04
21	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	2.94E-04
22	GO:0008883: glutamyl-tRNA reductase activity	2.94E-04
23	GO:0052832: inositol monophosphate 3-phosphatase activity	2.94E-04
24	GO:0008934: inositol monophosphate 1-phosphatase activity	2.94E-04
25	GO:0052833: inositol monophosphate 4-phosphatase activity	2.94E-04
26	GO:0005528: FK506 binding	4.45E-04
27	GO:0045174: glutathione dehydrogenase (ascorbate) activity	4.86E-04
28	GO:0010277: chlorophyllide a oxygenase [overall] activity	4.86E-04
29	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	6.95E-04
30	GO:0004659: prenyltransferase activity	9.21E-04
31	GO:1990137: plant seed peroxidase activity	9.21E-04
32	GO:0003959: NADPH dehydrogenase activity	1.16E-03
33	GO:0003989: acetyl-CoA carboxylase activity	1.16E-03
34	GO:0004040: amidase activity	1.16E-03
35	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.71E-03
36	GO:0003735: structural constituent of ribosome	1.78E-03
37	GO:0008235: metalloexopeptidase activity	2.01E-03
38	GO:0003843: 1,3-beta-D-glucan synthase activity	2.65E-03
39	GO:0016788: hydrolase activity, acting on ester bonds	2.81E-03
40	GO:0051539: 4 iron, 4 sulfur cluster binding	2.82E-03
41	GO:0004177: aminopeptidase activity	4.12E-03
42	GO:0004089: carbonate dehydratase activity	4.93E-03
43	GO:0004650: polygalacturonase activity	5.56E-03
44	GO:0005509: calcium ion binding	6.85E-03
45	GO:0043424: protein histidine kinase binding	7.19E-03
46	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	7.82E-03
47	GO:0030570: pectate lyase activity	8.69E-03
48	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.26E-02
49	GO:0005200: structural constituent of cytoskeleton	1.50E-02
50	GO:0004601: peroxidase activity	1.63E-02
51	GO:0016168: chlorophyll binding	1.70E-02
52	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.83E-02
53	GO:0102483: scopolin beta-glucosidase activity	1.83E-02
54	GO:0052689: carboxylic ester hydrolase activity	2.24E-02
55	GO:0008422: beta-glucosidase activity	2.48E-02
56	GO:0050661: NADP binding	2.56E-02
57	GO:0004364: glutathione transferase activity	2.72E-02
58	GO:0051537: 2 iron, 2 sulfur cluster binding	2.96E-02
59	GO:0043621: protein self-association	2.96E-02
60	GO:0003690: double-stranded DNA binding	3.54E-02
61	GO:0008289: lipid binding	4.15E-02
62	GO:0016491: oxidoreductase activity	4.18E-02
63	GO:0022857: transmembrane transporter activity	4.26E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0009507: chloroplast	1.12E-32
3	GO:0009535: chloroplast thylakoid membrane	5.53E-24
4	GO:0009579: thylakoid	9.54E-20
5	GO:0009534: chloroplast thylakoid	1.04E-19
6	GO:0009941: chloroplast envelope	2.57E-14
7	GO:0009543: chloroplast thylakoid lumen	2.21E-13
8	GO:0009570: chloroplast stroma	5.49E-12
9	GO:0031977: thylakoid lumen	6.66E-12
10	GO:0010007: magnesium chelatase complex	3.08E-06
11	GO:0009654: photosystem II oxygen evolving complex	1.97E-05
12	GO:0048046: apoplast	2.95E-05
13	GO:0019898: extrinsic component of membrane	6.43E-05
14	GO:0009706: chloroplast inner membrane	8.51E-05
15	GO:0031969: chloroplast membrane	8.55E-05
16	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.27E-04
17	GO:0009317: acetyl-CoA carboxylase complex	4.86E-04
18	GO:0009528: plastid inner membrane	4.86E-04
19	GO:0005840: ribosome	5.01E-04
20	GO:0009527: plastid outer membrane	9.21E-04
21	GO:0010287: plastoglobule	9.92E-04
22	GO:0010319: stromule	1.35E-03
23	GO:0009533: chloroplast stromal thylakoid	2.01E-03
24	GO:0005618: cell wall	2.19E-03
25	GO:0046658: anchored component of plasma membrane	2.26E-03
26	GO:0009538: photosystem I reaction center	2.32E-03
27	GO:0005811: lipid particle	2.65E-03
28	GO:0000148: 1,3-beta-D-glucan synthase complex	2.65E-03
29	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.00E-03
30	GO:0045298: tubulin complex	3.00E-03
31	GO:0016020: membrane	3.63E-03
32	GO:0031225: anchored component of membrane	5.21E-03
33	GO:0043234: protein complex	6.25E-03
34	GO:0042651: thylakoid membrane	7.19E-03
35	GO:0009532: plastid stroma	7.68E-03
36	GO:0009505: plant-type cell wall	1.09E-02
37	GO:0009522: photosystem I	1.14E-02
38	GO:0009707: chloroplast outer membrane	1.97E-02
39	GO:0015934: large ribosomal subunit	2.19E-02
40	GO:0016021: integral component of membrane	3.40E-02
41	GO:0005886: plasma membrane	4.86E-02