Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G23670

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010275: NAD(P)H dehydrogenase complex assembly0.00E+00
2GO:0002184: cytoplasmic translational termination0.00E+00
3GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
4GO:0061635: regulation of protein complex stability0.00E+00
5GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
6GO:0016553: base conversion or substitution editing0.00E+00
7GO:0042821: pyridoxal biosynthetic process0.00E+00
8GO:0060416: response to growth hormone0.00E+00
9GO:0042820: vitamin B6 catabolic process0.00E+00
10GO:0018023: peptidyl-lysine trimethylation0.00E+00
11GO:0042371: vitamin K biosynthetic process0.00E+00
12GO:0006399: tRNA metabolic process0.00E+00
13GO:0070125: mitochondrial translational elongation0.00E+00
14GO:0006429: leucyl-tRNA aminoacylation0.00E+00
15GO:0032544: plastid translation1.05E-18
16GO:0006412: translation2.18E-18
17GO:0015995: chlorophyll biosynthetic process4.07E-13
18GO:0042254: ribosome biogenesis1.10E-11
19GO:0015979: photosynthesis8.76E-11
20GO:0009658: chloroplast organization1.73E-10
21GO:0010027: thylakoid membrane organization3.79E-07
22GO:0009735: response to cytokinin7.57E-07
23GO:0009773: photosynthetic electron transport in photosystem I1.96E-06
24GO:0009793: embryo development ending in seed dormancy2.64E-06
25GO:1901259: chloroplast rRNA processing7.00E-06
26GO:1902326: positive regulation of chlorophyll biosynthetic process7.32E-06
27GO:0009409: response to cold2.15E-05
28GO:0006782: protoporphyrinogen IX biosynthetic process5.58E-05
29GO:0009790: embryo development7.11E-05
30GO:0010207: photosystem II assembly1.28E-04
31GO:0019253: reductive pentose-phosphate cycle1.28E-04
32GO:0010236: plastoquinone biosynthetic process1.51E-04
33GO:0045038: protein import into chloroplast thylakoid membrane1.51E-04
34GO:0006636: unsaturated fatty acid biosynthetic process1.78E-04
35GO:0042549: photosystem II stabilization2.16E-04
36GO:0006418: tRNA aminoacylation for protein translation2.37E-04
37GO:0042026: protein refolding2.91E-04
38GO:0009772: photosynthetic electron transport in photosystem II3.76E-04
39GO:0009306: protein secretion3.85E-04
40GO:0010729: positive regulation of hydrogen peroxide biosynthetic process4.05E-04
41GO:0006434: seryl-tRNA aminoacylation4.05E-04
42GO:0009443: pyridoxal 5'-phosphate salvage4.05E-04
43GO:0009090: homoserine biosynthetic process4.05E-04
44GO:0006438: valyl-tRNA aminoacylation4.05E-04
45GO:0043489: RNA stabilization4.05E-04
46GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process4.05E-04
47GO:1904966: positive regulation of vitamin E biosynthetic process4.05E-04
48GO:0006426: glycyl-tRNA aminoacylation4.05E-04
49GO:1904964: positive regulation of phytol biosynthetic process4.05E-04
50GO:1902458: positive regulation of stomatal opening4.05E-04
51GO:0034337: RNA folding4.05E-04
52GO:0042255: ribosome assembly4.71E-04
53GO:0000413: protein peptidyl-prolyl isomerization4.74E-04
54GO:0071482: cellular response to light stimulus5.75E-04
55GO:0055114: oxidation-reduction process6.74E-04
56GO:0006783: heme biosynthetic process6.89E-04
57GO:0032502: developmental process7.44E-04
58GO:0010205: photoinhibition8.13E-04
59GO:0043039: tRNA aminoacylation8.76E-04
60GO:0034755: iron ion transmembrane transport8.76E-04
61GO:0018026: peptidyl-lysine monomethylation8.76E-04
62GO:1904143: positive regulation of carotenoid biosynthetic process8.76E-04
63GO:0080148: negative regulation of response to water deprivation8.76E-04
64GO:1903426: regulation of reactive oxygen species biosynthetic process8.76E-04
65GO:0030388: fructose 1,6-bisphosphate metabolic process8.76E-04
66GO:0019684: photosynthesis, light reaction1.09E-03
67GO:0009089: lysine biosynthetic process via diaminopimelate1.09E-03
68GO:0006352: DNA-templated transcription, initiation1.09E-03
69GO:0045037: protein import into chloroplast stroma1.24E-03
70GO:0042742: defense response to bacterium1.41E-03
71GO:0009767: photosynthetic electron transport chain1.41E-03
72GO:0006000: fructose metabolic process1.42E-03
73GO:0006954: inflammatory response1.42E-03
74GO:0090391: granum assembly1.42E-03
75GO:0010581: regulation of starch biosynthetic process1.42E-03
76GO:0006518: peptide metabolic process1.42E-03
77GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.42E-03
78GO:0006457: protein folding1.60E-03
79GO:0051085: chaperone mediated protein folding requiring cofactor2.06E-03
80GO:0006241: CTP biosynthetic process2.06E-03
81GO:0009052: pentose-phosphate shunt, non-oxidative branch2.06E-03
82GO:0006165: nucleoside diphosphate phosphorylation2.06E-03
83GO:0006228: UTP biosynthetic process2.06E-03
84GO:0016556: mRNA modification2.06E-03
85GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis2.06E-03
86GO:2001141: regulation of RNA biosynthetic process2.06E-03
87GO:0009067: aspartate family amino acid biosynthetic process2.06E-03
88GO:0061077: chaperone-mediated protein folding2.67E-03
89GO:0019464: glycine decarboxylation via glycine cleavage system2.76E-03
90GO:0006183: GTP biosynthetic process2.76E-03
91GO:0006546: glycine catabolic process2.76E-03
92GO:0006749: glutathione metabolic process2.76E-03
93GO:0071483: cellular response to blue light2.76E-03
94GO:0006808: regulation of nitrogen utilization2.76E-03
95GO:0007005: mitochondrion organization2.93E-03
96GO:0009247: glycolipid biosynthetic process3.54E-03
97GO:0032543: mitochondrial translation3.54E-03
98GO:0006564: L-serine biosynthetic process3.54E-03
99GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.38E-03
100GO:0006655: phosphatidylglycerol biosynthetic process4.38E-03
101GO:0010190: cytochrome b6f complex assembly4.38E-03
102GO:0032973: amino acid export4.38E-03
103GO:0009741: response to brassinosteroid4.38E-03
104GO:0009955: adaxial/abaxial pattern specification5.27E-03
105GO:0042372: phylloquinone biosynthetic process5.27E-03
106GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)5.27E-03
107GO:0006458: 'de novo' protein folding5.27E-03
108GO:0010189: vitamin E biosynthetic process5.27E-03
109GO:0009854: oxidative photosynthetic carbon pathway5.27E-03
110GO:0009088: threonine biosynthetic process5.27E-03
111GO:0010555: response to mannitol5.27E-03
112GO:0043090: amino acid import6.23E-03
113GO:0006614: SRP-dependent cotranslational protein targeting to membrane6.23E-03
114GO:0045995: regulation of embryonic development6.23E-03
115GO:0048564: photosystem I assembly7.25E-03
116GO:0009642: response to light intensity7.25E-03
117GO:0006353: DNA-templated transcription, termination7.25E-03
118GO:0006605: protein targeting7.25E-03
119GO:0019375: galactolipid biosynthetic process7.25E-03
120GO:0009704: de-etiolation7.25E-03
121GO:2000070: regulation of response to water deprivation7.25E-03
122GO:0006002: fructose 6-phosphate metabolic process8.32E-03
123GO:0022900: electron transport chain8.32E-03
124GO:0019430: removal of superoxide radicals8.32E-03
125GO:0009657: plastid organization8.32E-03
126GO:0017004: cytochrome complex assembly8.32E-03
127GO:0009821: alkaloid biosynthetic process9.45E-03
128GO:0010206: photosystem II repair9.45E-03
129GO:0080144: amino acid homeostasis9.45E-03
130GO:0048481: plant ovule development1.03E-02
131GO:0018298: protein-chromophore linkage1.03E-02
132GO:0042744: hydrogen peroxide catabolic process1.03E-02
133GO:0006779: porphyrin-containing compound biosynthetic process1.06E-02
134GO:0009086: methionine biosynthetic process1.06E-02
135GO:0010380: regulation of chlorophyll biosynthetic process1.06E-02
136GO:0007568: aging1.19E-02
137GO:0045087: innate immune response1.30E-02
138GO:0009637: response to blue light1.30E-02
139GO:0009073: aromatic amino acid family biosynthetic process1.31E-02
140GO:0043085: positive regulation of catalytic activity1.31E-02
141GO:0006415: translational termination1.31E-02
142GO:0006879: cellular iron ion homeostasis1.31E-02
143GO:0018119: peptidyl-cysteine S-nitrosylation1.31E-02
144GO:0032259: methylation1.31E-02
145GO:0009451: RNA modification1.35E-02
146GO:0016024: CDP-diacylglycerol biosynthetic process1.45E-02
147GO:0005986: sucrose biosynthetic process1.58E-02
148GO:0010628: positive regulation of gene expression1.58E-02
149GO:0006006: glucose metabolic process1.58E-02
150GO:0006094: gluconeogenesis1.58E-02
151GO:0010114: response to red light1.69E-02
152GO:0010020: chloroplast fission1.73E-02
153GO:0090351: seedling development1.87E-02
154GO:0019344: cysteine biosynthetic process2.18E-02
155GO:0000027: ribosomal large subunit assembly2.18E-02
156GO:0006364: rRNA processing2.28E-02
157GO:0009768: photosynthesis, light harvesting in photosystem I2.33E-02
158GO:0019915: lipid storage2.50E-02
159GO:0031408: oxylipin biosynthetic process2.50E-02
160GO:0016114: terpenoid biosynthetic process2.50E-02
161GO:0016226: iron-sulfur cluster assembly2.66E-02
162GO:0006096: glycolytic process2.69E-02
163GO:0009411: response to UV2.83E-02
164GO:0009561: megagametogenesis3.01E-02
165GO:0016117: carotenoid biosynthetic process3.19E-02
166GO:0008033: tRNA processing3.37E-02
167GO:0045454: cell redox homeostasis3.73E-02
168GO:0009646: response to absence of light3.74E-02
169GO:0015986: ATP synthesis coupled proton transport3.74E-02
170GO:0009791: post-embryonic development3.93E-02
171GO:0019252: starch biosynthetic process3.93E-02
172GO:0002229: defense response to oomycetes4.12E-02
173GO:0000302: response to reactive oxygen species4.12E-02
RankGO TermAdjusted P value
1GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
2GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
3GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
4GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
5GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
6GO:0008887: glycerate kinase activity0.00E+00
7GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
8GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
9GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
10GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
11GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
12GO:0004822: isoleucine-tRNA ligase activity0.00E+00
13GO:0004853: uroporphyrinogen decarboxylase activity0.00E+00
14GO:0004823: leucine-tRNA ligase activity0.00E+00
15GO:0015038: glutathione disulfide oxidoreductase activity0.00E+00
16GO:0046408: chlorophyll synthetase activity0.00E+00
17GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
18GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
19GO:0005048: signal sequence binding0.00E+00
20GO:0019843: rRNA binding1.76E-35
21GO:0003735: structural constituent of ribosome3.10E-22
22GO:0016851: magnesium chelatase activity3.29E-07
23GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.68E-07
24GO:0002161: aminoacyl-tRNA editing activity2.54E-05
25GO:0003723: RNA binding4.59E-05
26GO:0016987: sigma factor activity9.74E-05
27GO:0001053: plastid sigma factor activity9.74E-05
28GO:0008266: poly(U) RNA binding1.28E-04
29GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity2.91E-04
30GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity4.05E-04
31GO:0004828: serine-tRNA ligase activity4.05E-04
32GO:0045485: omega-6 fatty acid desaturase activity4.05E-04
33GO:0004832: valine-tRNA ligase activity4.05E-04
34GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity4.05E-04
35GO:0004820: glycine-tRNA ligase activity4.05E-04
36GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity4.05E-04
37GO:0004812: aminoacyl-tRNA ligase activity4.28E-04
38GO:0003729: mRNA binding4.43E-04
39GO:0004033: aldo-keto reductase (NADP) activity4.71E-04
40GO:0051537: 2 iron, 2 sulfur cluster binding5.22E-04
41GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water5.75E-04
42GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity8.76E-04
43GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity8.76E-04
44GO:0016630: protochlorophyllide reductase activity8.76E-04
45GO:0004412: homoserine dehydrogenase activity8.76E-04
46GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase8.76E-04
47GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity8.76E-04
48GO:0042389: omega-3 fatty acid desaturase activity8.76E-04
49GO:0004618: phosphoglycerate kinase activity8.76E-04
50GO:0009977: proton motive force dependent protein transmembrane transporter activity8.76E-04
51GO:0004617: phosphoglycerate dehydrogenase activity8.76E-04
52GO:0044183: protein binding involved in protein folding1.09E-03
53GO:0051082: unfolded protein binding1.25E-03
54GO:0031072: heat shock protein binding1.41E-03
55GO:0017150: tRNA dihydrouridine synthase activity1.42E-03
56GO:0004148: dihydrolipoyl dehydrogenase activity1.42E-03
57GO:0004751: ribose-5-phosphate isomerase activity1.42E-03
58GO:0070402: NADPH binding1.42E-03
59GO:0004072: aspartate kinase activity2.06E-03
60GO:0004375: glycine dehydrogenase (decarboxylating) activity2.06E-03
61GO:0035250: UDP-galactosyltransferase activity2.06E-03
62GO:0016149: translation release factor activity, codon specific2.06E-03
63GO:0004550: nucleoside diphosphate kinase activity2.06E-03
64GO:0043023: ribosomal large subunit binding2.06E-03
65GO:0008097: 5S rRNA binding2.06E-03
66GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity2.06E-03
67GO:0005528: FK506 binding2.20E-03
68GO:0016491: oxidoreductase activity2.74E-03
69GO:0043495: protein anchor2.76E-03
70GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.76E-03
71GO:0004659: prenyltransferase activity2.76E-03
72GO:0016279: protein-lysine N-methyltransferase activity2.76E-03
73GO:0003727: single-stranded RNA binding3.47E-03
74GO:0003959: NADPH dehydrogenase activity3.54E-03
75GO:0005509: calcium ion binding3.59E-03
76GO:0009055: electron carrier activity4.32E-03
77GO:0004130: cytochrome-c peroxidase activity4.38E-03
78GO:0042578: phosphoric ester hydrolase activity4.38E-03
79GO:0051920: peroxiredoxin activity5.27E-03
80GO:0019899: enzyme binding6.23E-03
81GO:0008237: metallopeptidase activity6.98E-03
82GO:0008312: 7S RNA binding7.25E-03
83GO:0016209: antioxidant activity7.25E-03
84GO:0016597: amino acid binding7.41E-03
85GO:0016168: chlorophyll binding8.30E-03
86GO:0008135: translation factor activity, RNA binding8.32E-03
87GO:0005525: GTP binding8.33E-03
88GO:0003747: translation release factor activity9.45E-03
89GO:0005381: iron ion transmembrane transporter activity1.06E-02
90GO:0016844: strictosidine synthase activity1.06E-02
91GO:0008565: protein transporter activity1.09E-02
92GO:0004222: metalloendopeptidase activity1.13E-02
93GO:0008047: enzyme activator activity1.19E-02
94GO:0003746: translation elongation factor activity1.30E-02
95GO:0003924: GTPase activity1.40E-02
96GO:0000049: tRNA binding1.45E-02
97GO:0050661: NADP binding1.49E-02
98GO:0009982: pseudouridine synthase activity1.58E-02
99GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.73E-02
100GO:0031409: pigment binding2.02E-02
101GO:0051287: NAD binding2.04E-02
102GO:0008168: methyltransferase activity2.17E-02
103GO:0051536: iron-sulfur cluster binding2.18E-02
104GO:0003899: DNA-directed 5'-3' RNA polymerase activity2.28E-02
105GO:0004601: peroxidase activity2.28E-02
106GO:0043424: protein histidine kinase binding2.33E-02
107GO:0003690: double-stranded DNA binding2.36E-02
108GO:0004176: ATP-dependent peptidase activity2.50E-02
109GO:0022891: substrate-specific transmembrane transporter activity2.83E-02
110GO:0046933: proton-transporting ATP synthase activity, rotational mechanism3.55E-02
111GO:0010181: FMN binding3.74E-02
112GO:0004791: thioredoxin-disulfide reductase activity3.74E-02
113GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.52E-02
RankGO TermAdjusted P value
1GO:0044391: ribosomal subunit0.00E+00
2GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
3GO:0009507: chloroplast6.61E-134
4GO:0009570: chloroplast stroma1.94E-70
5GO:0009941: chloroplast envelope6.69E-70
6GO:0009535: chloroplast thylakoid membrane1.24E-46
7GO:0009579: thylakoid2.85E-34
8GO:0009543: chloroplast thylakoid lumen3.26E-23
9GO:0009534: chloroplast thylakoid4.17E-23
10GO:0005840: ribosome1.68E-22
11GO:0031977: thylakoid lumen9.33E-17
12GO:0009654: photosystem II oxygen evolving complex1.52E-12
13GO:0019898: extrinsic component of membrane2.27E-09
14GO:0009706: chloroplast inner membrane6.73E-09
15GO:0009536: plastid5.15E-08
16GO:0031969: chloroplast membrane1.31E-06
17GO:0000311: plastid large ribosomal subunit2.72E-06
18GO:0030095: chloroplast photosystem II4.87E-06
19GO:0010319: stromule6.57E-06
20GO:0033281: TAT protein transport complex2.54E-05
21GO:0010007: magnesium chelatase complex2.54E-05
22GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.25E-05
23GO:0000312: plastid small ribosomal subunit1.28E-04
24GO:0042651: thylakoid membrane2.37E-04
25GO:0015934: large ribosomal subunit2.64E-04
26GO:0009533: chloroplast stromal thylakoid3.76E-04
27GO:0009547: plastid ribosome4.05E-04
28GO:0042170: plastid membrane8.76E-04
29GO:0080085: signal recognition particle, chloroplast targeting8.76E-04
30GO:0009295: nucleoid9.40E-04
31GO:0042646: plastid nucleoid2.06E-03
32GO:0005960: glycine cleavage complex2.06E-03
33GO:0015935: small ribosomal subunit2.67E-03
34GO:0016020: membrane2.77E-03
35GO:0022626: cytosolic ribosome2.87E-03
36GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)4.38E-03
37GO:0009522: photosystem I4.71E-03
38GO:0009523: photosystem II5.06E-03
39GO:0016363: nuclear matrix5.27E-03
40GO:0030529: intracellular ribonucleoprotein complex7.85E-03
41GO:0010287: plastoglobule8.11E-03
42GO:0009539: photosystem II reaction center8.32E-03
43GO:0005786: signal recognition particle, endoplasmic reticulum targeting8.32E-03
44GO:0005763: mitochondrial small ribosomal subunit9.45E-03
45GO:0032040: small-subunit processome1.45E-02
46GO:0009508: plastid chromosome1.58E-02
47GO:0022627: cytosolic small ribosomal subunit1.87E-02
48GO:0030076: light-harvesting complex1.87E-02
49GO:0009532: plastid stroma2.50E-02
50GO:0048046: apoplast2.85E-02
51GO:0022625: cytosolic large ribosomal subunit3.18E-02
52GO:0005623: cell4.16E-02
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Gene type



Gene DE type