co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G21540

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
2	GO:0045176: apical protein localization	0.00E+00
3	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.77E-05
4	GO:0015808: L-alanine transport	1.02E-04
5	GO:0043266: regulation of potassium ion transport	1.02E-04
6	GO:0010480: microsporocyte differentiation	1.02E-04
7	GO:0031338: regulation of vesicle fusion	1.02E-04
8	GO:0006723: cuticle hydrocarbon biosynthetic process	1.02E-04
9	GO:0080051: cutin transport	1.02E-04
10	GO:2000021: regulation of ion homeostasis	1.02E-04
11	GO:0010540: basipetal auxin transport	2.37E-04
12	GO:0010270: photosystem II oxygen evolving complex assembly	2.40E-04
13	GO:0015804: neutral amino acid transport	2.40E-04
14	GO:0015908: fatty acid transport	2.40E-04
15	GO:0010115: regulation of abscisic acid biosynthetic process	2.40E-04
16	GO:0045717: negative regulation of fatty acid biosynthetic process	2.40E-04
17	GO:0010541: acropetal auxin transport	2.40E-04
18	GO:0098712: L-glutamate import across plasma membrane	2.40E-04
19	GO:0010025: wax biosynthetic process	2.99E-04
20	GO:0043447: alkane biosynthetic process	3.99E-04
21	GO:0010160: formation of animal organ boundary	3.99E-04
22	GO:0090153: regulation of sphingolipid biosynthetic process	3.99E-04
23	GO:0090630: activation of GTPase activity	3.99E-04
24	GO:0048443: stamen development	5.22E-04
25	GO:0051639: actin filament network formation	5.73E-04
26	GO:0043481: anthocyanin accumulation in tissues in response to UV light	5.73E-04
27	GO:0051764: actin crosslink formation	7.62E-04
28	GO:0006085: acetyl-CoA biosynthetic process	7.62E-04
29	GO:0010222: stem vascular tissue pattern formation	7.62E-04
30	GO:0071554: cell wall organization or biogenesis	8.02E-04
31	GO:0016120: carotene biosynthetic process	9.62E-04
32	GO:0006751: glutathione catabolic process	1.17E-03
33	GO:0048827: phyllome development	1.17E-03
34	GO:0042549: photosystem II stabilization	1.17E-03
35	GO:0006828: manganese ion transport	1.17E-03
36	GO:0060918: auxin transport	1.17E-03
37	GO:0006796: phosphate-containing compound metabolic process	1.17E-03
38	GO:2000033: regulation of seed dormancy process	1.40E-03
39	GO:0043090: amino acid import	1.65E-03
40	GO:0048437: floral organ development	1.65E-03
41	GO:0010047: fruit dehiscence	1.65E-03
42	GO:0008610: lipid biosynthetic process	1.90E-03
43	GO:0006779: porphyrin-containing compound biosynthetic process	2.74E-03
44	GO:0009086: methionine biosynthetic process	2.74E-03
45	GO:0010215: cellulose microfibril organization	3.05E-03
46	GO:0010162: seed dormancy process	3.05E-03
47	GO:0006782: protoporphyrinogen IX biosynthetic process	3.05E-03
48	GO:0046856: phosphatidylinositol dephosphorylation	3.36E-03
49	GO:0006816: calcium ion transport	3.36E-03
50	GO:1903507: negative regulation of nucleic acid-templated transcription	3.36E-03
51	GO:0048229: gametophyte development	3.36E-03
52	GO:0008361: regulation of cell size	3.69E-03
53	GO:0012501: programmed cell death	3.69E-03
54	GO:0006820: anion transport	3.69E-03
55	GO:0010152: pollen maturation	3.69E-03
56	GO:0010075: regulation of meristem growth	4.02E-03
57	GO:0009725: response to hormone	4.02E-03
58	GO:0010588: cotyledon vascular tissue pattern formation	4.02E-03
59	GO:0010102: lateral root morphogenesis	4.02E-03
60	GO:0010229: inflorescence development	4.02E-03
61	GO:0006629: lipid metabolic process	4.05E-03
62	GO:0007165: signal transduction	4.07E-03
63	GO:0009934: regulation of meristem structural organization	4.37E-03
64	GO:0048768: root hair cell tip growth	4.37E-03
65	GO:0010143: cutin biosynthetic process	4.37E-03
66	GO:0009825: multidimensional cell growth	4.72E-03
67	GO:0010030: positive regulation of seed germination	4.72E-03
68	GO:0051017: actin filament bundle assembly	5.46E-03
69	GO:2000022: regulation of jasmonic acid mediated signaling pathway	6.64E-03
70	GO:0007623: circadian rhythm	7.80E-03
71	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	7.91E-03
72	GO:0048653: anther development	8.35E-03
73	GO:0042631: cellular response to water deprivation	8.35E-03
74	GO:0042335: cuticle development	8.35E-03
75	GO:0008360: regulation of cell shape	8.80E-03
76	GO:0009958: positive gravitropism	8.80E-03
77	GO:0010182: sugar mediated signaling pathway	8.80E-03
78	GO:0048825: cotyledon development	9.73E-03
79	GO:0048235: pollen sperm cell differentiation	1.07E-02
80	GO:0030163: protein catabolic process	1.12E-02
81	GO:0009639: response to red or far red light	1.17E-02
82	GO:0071805: potassium ion transmembrane transport	1.22E-02
83	GO:0009911: positive regulation of flower development	1.32E-02
84	GO:0006468: protein phosphorylation	1.40E-02
85	GO:0015995: chlorophyll biosynthetic process	1.48E-02
86	GO:0030244: cellulose biosynthetic process	1.60E-02
87	GO:0046777: protein autophosphorylation	1.61E-02
88	GO:0010311: lateral root formation	1.65E-02
89	GO:0010218: response to far red light	1.71E-02
90	GO:0048527: lateral root development	1.77E-02
91	GO:0009637: response to blue light	1.89E-02
92	GO:0006897: endocytosis	2.13E-02
93	GO:0009744: response to sucrose	2.26E-02
94	GO:0009640: photomorphogenesis	2.26E-02
95	GO:0009926: auxin polar transport	2.26E-02
96	GO:0009733: response to auxin	2.37E-02
97	GO:0031347: regulation of defense response	2.59E-02
98	GO:0042538: hyperosmotic salinity response	2.66E-02
99	GO:0006812: cation transport	2.66E-02
100	GO:0009664: plant-type cell wall organization	2.66E-02
101	GO:0006813: potassium ion transport	2.80E-02
102	GO:0009734: auxin-activated signaling pathway	3.13E-02
103	GO:0005975: carbohydrate metabolic process	3.45E-02
104	GO:0009624: response to nematode	3.59E-02
105	GO:0018105: peptidyl-serine phosphorylation	3.67E-02
106	GO:0009611: response to wounding	4.02E-02
107	GO:0006633: fatty acid biosynthetic process	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0038198: auxin receptor activity	0.00E+00
2	GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity	0.00E+00
3	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
4	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	1.02E-04
5	GO:0046912: transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer	1.02E-04
6	GO:0005227: calcium activated cation channel activity	1.02E-04
7	GO:0015194: L-serine transmembrane transporter activity	1.02E-04
8	GO:0047150: betaine-homocysteine S-methyltransferase activity	1.02E-04
9	GO:0008158: hedgehog receptor activity	1.02E-04
10	GO:0015245: fatty acid transporter activity	1.02E-04
11	GO:0004674: protein serine/threonine kinase activity	1.41E-04
12	GO:0003839: gamma-glutamylcyclotransferase activity	2.40E-04
13	GO:0008898: S-adenosylmethionine-homocysteine S-methyltransferase activity	2.40E-04
14	GO:0000822: inositol hexakisphosphate binding	2.40E-04
15	GO:0015180: L-alanine transmembrane transporter activity	2.40E-04
16	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	3.99E-04
17	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	3.99E-04
18	GO:0015193: L-proline transmembrane transporter activity	3.99E-04
19	GO:0030267: glyoxylate reductase (NADP) activity	3.99E-04
20	GO:0016301: kinase activity	5.08E-04
21	GO:0015186: L-glutamine transmembrane transporter activity	5.73E-04
22	GO:0003878: ATP citrate synthase activity	5.73E-04
23	GO:0015175: neutral amino acid transmembrane transporter activity	5.73E-04
24	GO:0004445: inositol-polyphosphate 5-phosphatase activity	5.73E-04
25	GO:0010011: auxin binding	7.62E-04
26	GO:0005313: L-glutamate transmembrane transporter activity	7.62E-04
27	GO:0008381: mechanically-gated ion channel activity	9.62E-04
28	GO:0017137: Rab GTPase binding	9.62E-04
29	GO:0016413: O-acetyltransferase activity	1.08E-03
30	GO:0042578: phosphoric ester hydrolase activity	1.17E-03
31	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	1.17E-03
32	GO:0015631: tubulin binding	1.40E-03
33	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	1.40E-03
34	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.40E-03
35	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.47E-03
36	GO:0004427: inorganic diphosphatase activity	1.65E-03
37	GO:0004033: aldo-keto reductase (NADP) activity	1.90E-03
38	GO:0005524: ATP binding	2.62E-03
39	GO:0005384: manganese ion transmembrane transporter activity	2.74E-03
40	GO:0047617: acyl-CoA hydrolase activity	2.74E-03
41	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	3.69E-03
42	GO:0004565: beta-galactosidase activity	4.02E-03
43	GO:0010329: auxin efflux transmembrane transporter activity	4.02E-03
44	GO:0015095: magnesium ion transmembrane transporter activity	4.02E-03
45	GO:0004190: aspartic-type endopeptidase activity	4.72E-03
46	GO:0005528: FK506 binding	5.46E-03
47	GO:0003714: transcription corepressor activity	5.46E-03
48	GO:0015079: potassium ion transmembrane transporter activity	5.85E-03
49	GO:0016829: lyase activity	6.12E-03
50	GO:0004707: MAP kinase activity	6.24E-03
51	GO:0033612: receptor serine/threonine kinase binding	6.24E-03
52	GO:0019706: protein-cysteine S-palmitoyltransferase activity	6.24E-03
53	GO:0004872: receptor activity	9.73E-03
54	GO:0051015: actin filament binding	1.12E-02
55	GO:0016788: hydrolase activity, acting on ester bonds	1.23E-02
56	GO:0005096: GTPase activator activity	1.65E-02
57	GO:0004871: signal transducer activity	1.89E-02
58	GO:0035091: phosphatidylinositol binding	2.39E-02
59	GO:0015293: symporter activity	2.46E-02
60	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.52E-02
61	GO:0015171: amino acid transmembrane transporter activity	3.01E-02
62	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	3.22E-02
63	GO:0004650: polygalacturonase activity	3.37E-02
64	GO:0003779: actin binding	3.52E-02

Rank	GO Term	Adjusted P value
1	GO:0009930: longitudinal side of cell surface	0.00E+00
2	GO:0005886: plasma membrane	1.00E-07
3	GO:0009897: external side of plasma membrane	2.08E-06
4	GO:0016021: integral component of membrane	1.55E-04
5	GO:0009505: plant-type cell wall	3.89E-04
6	GO:0016328: lateral plasma membrane	3.99E-04
7	GO:0032432: actin filament bundle	5.73E-04
8	GO:0009346: citrate lyase complex	5.73E-04
9	GO:0005884: actin filament	3.36E-03
10	GO:0030659: cytoplasmic vesicle membrane	4.37E-03
11	GO:0005770: late endosome	8.80E-03
12	GO:0031969: chloroplast membrane	1.50E-02
13	GO:0009506: plasmodesma	1.51E-02
14	GO:0019005: SCF ubiquitin ligase complex	1.60E-02
15	GO:0000151: ubiquitin ligase complex	1.60E-02
16	GO:0005834: heterotrimeric G-protein complex	3.30E-02
17	GO:0012505: endomembrane system	3.52E-02
18	GO:0010287: plastoglobule	4.06E-02
19	GO:0009543: chloroplast thylakoid lumen	4.22E-02