co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G21370

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090627: plant epidermal cell differentiation	0.00E+00
2	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
3	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
4	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
5	GO:0090042: tubulin deacetylation	0.00E+00
6	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
7	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
8	GO:0010480: microsporocyte differentiation	0.00E+00
9	GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process	0.00E+00
10	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
11	GO:0002184: cytoplasmic translational termination	0.00E+00
12	GO:0090706: specification of plant organ position	0.00E+00
13	GO:0045014: negative regulation of transcription by glucose	0.00E+00
14	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
15	GO:0071482: cellular response to light stimulus	1.78E-05
16	GO:0006000: fructose metabolic process	2.05E-05
17	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	4.51E-05
18	GO:0009773: photosynthetic electron transport in photosystem I	5.40E-05
19	GO:0015995: chlorophyll biosynthetic process	1.28E-04
20	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.80E-04
21	GO:0048437: floral organ development	3.16E-04
22	GO:0015969: guanosine tetraphosphate metabolic process	3.60E-04
23	GO:0043266: regulation of potassium ion transport	3.60E-04
24	GO:0031338: regulation of vesicle fusion	3.60E-04
25	GO:0000481: maturation of 5S rRNA	3.60E-04
26	GO:0043087: regulation of GTPase activity	3.60E-04
27	GO:0071461: cellular response to redox state	3.60E-04
28	GO:2000021: regulation of ion homeostasis	3.60E-04
29	GO:0043609: regulation of carbon utilization	3.60E-04
30	GO:0010028: xanthophyll cycle	3.60E-04
31	GO:0034337: RNA folding	3.60E-04
32	GO:0010450: inflorescence meristem growth	3.60E-04
33	GO:0034757: negative regulation of iron ion transport	3.60E-04
34	GO:0010362: negative regulation of anion channel activity by blue light	3.60E-04
35	GO:0032544: plastid translation	4.86E-04
36	GO:0006002: fructose 6-phosphate metabolic process	4.86E-04
37	GO:0010206: photosystem II repair	5.82E-04
38	GO:0048507: meristem development	5.82E-04
39	GO:0000373: Group II intron splicing	5.82E-04
40	GO:0080005: photosystem stoichiometry adjustment	7.83E-04
41	GO:0010271: regulation of chlorophyll catabolic process	7.83E-04
42	GO:0090342: regulation of cell aging	7.83E-04
43	GO:0016122: xanthophyll metabolic process	7.83E-04
44	GO:0030388: fructose 1,6-bisphosphate metabolic process	7.83E-04
45	GO:0010270: photosystem II oxygen evolving complex assembly	7.83E-04
46	GO:0008152: metabolic process	8.62E-04
47	GO:0010027: thylakoid membrane organization	8.76E-04
48	GO:0048229: gametophyte development	9.22E-04
49	GO:0005983: starch catabolic process	1.05E-03
50	GO:0010075: regulation of meristem growth	1.19E-03
51	GO:0006094: gluconeogenesis	1.19E-03
52	GO:0009817: defense response to fungus, incompatible interaction	1.22E-03
53	GO:0080117: secondary growth	1.27E-03
54	GO:0006518: peptide metabolic process	1.27E-03
55	GO:0043617: cellular response to sucrose starvation	1.27E-03
56	GO:0090630: activation of GTPase activity	1.27E-03
57	GO:2001295: malonyl-CoA biosynthetic process	1.27E-03
58	GO:0045165: cell fate commitment	1.27E-03
59	GO:0009934: regulation of meristem structural organization	1.34E-03
60	GO:0009226: nucleotide-sugar biosynthetic process	1.83E-03
61	GO:0043572: plastid fission	1.83E-03
62	GO:2001141: regulation of RNA biosynthetic process	1.83E-03
63	GO:0046836: glycolipid transport	1.83E-03
64	GO:0009067: aspartate family amino acid biosynthetic process	1.83E-03
65	GO:0051639: actin filament network formation	1.83E-03
66	GO:0007623: circadian rhythm	2.20E-03
67	GO:0015994: chlorophyll metabolic process	2.45E-03
68	GO:0051205: protein insertion into membrane	2.45E-03
69	GO:0009902: chloroplast relocation	2.45E-03
70	GO:0010021: amylopectin biosynthetic process	2.45E-03
71	GO:0051781: positive regulation of cell division	2.45E-03
72	GO:0051764: actin crosslink formation	2.45E-03
73	GO:0045727: positive regulation of translation	2.45E-03
74	GO:0080092: regulation of pollen tube growth	2.46E-03
75	GO:0016120: carotene biosynthetic process	3.14E-03
76	GO:0006656: phosphatidylcholine biosynthetic process	3.14E-03
77	GO:0045038: protein import into chloroplast thylakoid membrane	3.14E-03
78	GO:0007094: mitotic spindle assembly checkpoint	3.14E-03
79	GO:1902183: regulation of shoot apical meristem development	3.14E-03
80	GO:0010158: abaxial cell fate specification	3.14E-03
81	GO:0048653: anther development	3.42E-03
82	GO:0009913: epidermal cell differentiation	3.88E-03
83	GO:0006655: phosphatidylglycerol biosynthetic process	3.88E-03
84	GO:0048831: regulation of shoot system development	3.88E-03
85	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	3.88E-03
86	GO:0006828: manganese ion transport	3.88E-03
87	GO:0000741: karyogamy	3.88E-03
88	GO:0009228: thiamine biosynthetic process	3.88E-03
89	GO:0042549: photosystem II stabilization	3.88E-03
90	GO:0010256: endomembrane system organization	3.88E-03
91	GO:0000470: maturation of LSU-rRNA	3.88E-03
92	GO:0009658: chloroplast organization	4.29E-03
93	GO:0009942: longitudinal axis specification	4.67E-03
94	GO:0048509: regulation of meristem development	4.67E-03
95	GO:0009854: oxidative photosynthetic carbon pathway	4.67E-03
96	GO:0009088: threonine biosynthetic process	4.67E-03
97	GO:1901657: glycosyl compound metabolic process	5.18E-03
98	GO:0010196: nonphotochemical quenching	5.52E-03
99	GO:0009772: photosynthetic electron transport in photosystem II	5.52E-03
100	GO:0032508: DNA duplex unwinding	6.41E-03
101	GO:0010492: maintenance of shoot apical meristem identity	6.41E-03
102	GO:0009827: plant-type cell wall modification	7.36E-03
103	GO:0009657: plastid organization	7.36E-03
104	GO:0010093: specification of floral organ identity	7.36E-03
105	GO:0090305: nucleic acid phosphodiester bond hydrolysis	8.35E-03
106	GO:0006098: pentose-phosphate shunt	8.35E-03
107	GO:2000024: regulation of leaf development	8.35E-03
108	GO:0034765: regulation of ion transmembrane transport	8.35E-03
109	GO:0048589: developmental growth	8.35E-03
110	GO:0000160: phosphorelay signal transduction system	9.04E-03
111	GO:0006633: fatty acid biosynthetic process	9.29E-03
112	GO:1900865: chloroplast RNA modification	9.38E-03
113	GO:0007346: regulation of mitotic cell cycle	9.38E-03
114	GO:0010205: photoinhibition	9.38E-03
115	GO:0009638: phototropism	9.38E-03
116	GO:0006779: porphyrin-containing compound biosynthetic process	9.38E-03
117	GO:0006782: protoporphyrinogen IX biosynthetic process	1.05E-02
118	GO:0045036: protein targeting to chloroplast	1.05E-02
119	GO:0009853: photorespiration	1.09E-02
120	GO:0006816: calcium ion transport	1.16E-02
121	GO:0009089: lysine biosynthetic process via diaminopimelate	1.16E-02
122	GO:1903507: negative regulation of nucleic acid-templated transcription	1.16E-02
123	GO:0006352: DNA-templated transcription, initiation	1.16E-02
124	GO:0006415: translational termination	1.16E-02
125	GO:0006820: anion transport	1.28E-02
126	GO:0010152: pollen maturation	1.28E-02
127	GO:0016024: CDP-diacylglycerol biosynthetic process	1.28E-02
128	GO:0010102: lateral root morphogenesis	1.40E-02
129	GO:0018107: peptidyl-threonine phosphorylation	1.40E-02
130	GO:0009718: anthocyanin-containing compound biosynthetic process	1.40E-02
131	GO:0009767: photosynthetic electron transport chain	1.40E-02
132	GO:0005986: sucrose biosynthetic process	1.40E-02
133	GO:0010207: photosystem II assembly	1.52E-02
134	GO:0010020: chloroplast fission	1.52E-02
135	GO:0009933: meristem structural organization	1.52E-02
136	GO:0019253: reductive pentose-phosphate cycle	1.52E-02
137	GO:0048768: root hair cell tip growth	1.52E-02
138	GO:0005985: sucrose metabolic process	1.65E-02
139	GO:0071732: cellular response to nitric oxide	1.65E-02
140	GO:0006636: unsaturated fatty acid biosynthetic process	1.78E-02
141	GO:0006364: rRNA processing	1.91E-02
142	GO:0009944: polarity specification of adaxial/abaxial axis	1.92E-02
143	GO:0051017: actin filament bundle assembly	1.92E-02
144	GO:0005975: carbohydrate metabolic process	1.97E-02
145	GO:0016575: histone deacetylation	2.06E-02
146	GO:0008299: isoprenoid biosynthetic process	2.06E-02
147	GO:0009909: regulation of flower development	2.11E-02
148	GO:0016114: terpenoid biosynthetic process	2.20E-02
149	GO:0061077: chaperone-mediated protein folding	2.20E-02
150	GO:0048316: seed development	2.33E-02
151	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.35E-02
152	GO:0071215: cellular response to abscisic acid stimulus	2.50E-02
153	GO:0009686: gibberellin biosynthetic process	2.50E-02
154	GO:0071369: cellular response to ethylene stimulus	2.50E-02
155	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.50E-02
156	GO:0009416: response to light stimulus	2.54E-02
157	GO:0046777: protein autophosphorylation	2.61E-02
158	GO:0048443: stamen development	2.65E-02
159	GO:0009306: protein secretion	2.65E-02
160	GO:0018105: peptidyl-serine phosphorylation	2.80E-02
161	GO:0070417: cellular response to cold	2.81E-02
162	GO:0042391: regulation of membrane potential	2.97E-02
163	GO:0010051: xylem and phloem pattern formation	2.97E-02
164	GO:0010087: phloem or xylem histogenesis	2.97E-02
165	GO:0010118: stomatal movement	2.97E-02
166	GO:0042631: cellular response to water deprivation	2.97E-02
167	GO:0045489: pectin biosynthetic process	3.13E-02
168	GO:0010154: fruit development	3.13E-02
169	GO:0010305: leaf vascular tissue pattern formation	3.13E-02
170	GO:0010197: polar nucleus fusion	3.13E-02
171	GO:0010268: brassinosteroid homeostasis	3.13E-02
172	GO:0009646: response to absence of light	3.30E-02
173	GO:0009791: post-embryonic development	3.47E-02
174	GO:0048825: cotyledon development	3.47E-02
175	GO:0019252: starch biosynthetic process	3.47E-02
176	GO:0071554: cell wall organization or biogenesis	3.64E-02
177	GO:0016132: brassinosteroid biosynthetic process	3.64E-02
178	GO:0080156: mitochondrial mRNA modification	3.64E-02
179	GO:0032259: methylation	3.68E-02
180	GO:0009737: response to abscisic acid	3.71E-02
181	GO:0016032: viral process	3.81E-02
182	GO:0009790: embryo development	3.96E-02
183	GO:0030163: protein catabolic process	3.99E-02
184	GO:0071281: cellular response to iron ion	3.99E-02
185	GO:0016125: sterol metabolic process	4.17E-02
186	GO:0006904: vesicle docking involved in exocytosis	4.35E-02
187	GO:0071805: potassium ion transmembrane transport	4.35E-02
188	GO:0001666: response to hypoxia	4.72E-02
189	GO:0006810: transport	4.84E-02
190	GO:0010029: regulation of seed germination	4.91E-02
191	GO:0009816: defense response to bacterium, incompatible interaction	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
2	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
3	GO:0052667: phosphomethylethanolamine N-methyltransferase activity	0.00E+00
4	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
5	GO:0004561: alpha-N-acetylglucosaminidase activity	0.00E+00
6	GO:0051721: protein phosphatase 2A binding	0.00E+00
7	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
8	GO:0042903: tubulin deacetylase activity	0.00E+00
9	GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity	0.00E+00
10	GO:0043014: alpha-tubulin binding	0.00E+00
11	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
12	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
13	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
14	GO:0008465: glycerate dehydrogenase activity	0.00E+00
15	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
16	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
17	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
18	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
19	GO:0051861: glycolipid binding	8.00E-05
20	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	8.00E-05
21	GO:0005528: FK506 binding	1.62E-04
22	GO:2001070: starch binding	1.80E-04
23	GO:0004176: ATP-dependent peptidase activity	2.13E-04
24	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	2.44E-04
25	GO:0051777: ent-kaurenoate oxidase activity	3.60E-04
26	GO:0050308: sugar-phosphatase activity	3.60E-04
27	GO:0003867: 4-aminobutyrate transaminase activity	3.60E-04
28	GO:0019203: carbohydrate phosphatase activity	3.60E-04
29	GO:0045485: omega-6 fatty acid desaturase activity	3.60E-04
30	GO:0030941: chloroplast targeting sequence binding	3.60E-04
31	GO:0042802: identical protein binding	6.86E-04
32	GO:0008728: GTP diphosphokinase activity	7.83E-04
33	GO:0009884: cytokinin receptor activity	7.83E-04
34	GO:0000234: phosphoethanolamine N-methyltransferase activity	7.83E-04
35	GO:0016868: intramolecular transferase activity, phosphotransferases	7.83E-04
36	GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity	7.83E-04
37	GO:0033201: alpha-1,4-glucan synthase activity	7.83E-04
38	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	7.83E-04
39	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	7.83E-04
40	GO:0005089: Rho guanyl-nucleotide exchange factor activity	9.22E-04
41	GO:0000155: phosphorelay sensor kinase activity	1.19E-03
42	GO:0004373: glycogen (starch) synthase activity	1.27E-03
43	GO:0004148: dihydrolipoyl dehydrogenase activity	1.27E-03
44	GO:0004075: biotin carboxylase activity	1.27E-03
45	GO:0030267: glyoxylate reductase (NADP) activity	1.27E-03
46	GO:0005034: osmosensor activity	1.27E-03
47	GO:0070402: NADPH binding	1.27E-03
48	GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity	1.27E-03
49	GO:0005096: GTPase activator activity	1.30E-03
50	GO:0008266: poly(U) RNA binding	1.34E-03
51	GO:0048487: beta-tubulin binding	1.83E-03
52	GO:0016149: translation release factor activity, codon specific	1.83E-03
53	GO:0009882: blue light photoreceptor activity	1.83E-03
54	GO:0043023: ribosomal large subunit binding	1.83E-03
55	GO:0017089: glycolipid transporter activity	1.83E-03
56	GO:0004072: aspartate kinase activity	1.83E-03
57	GO:0019201: nucleotide kinase activity	1.83E-03
58	GO:0016787: hydrolase activity	2.09E-03
59	GO:0033612: receptor serine/threonine kinase binding	2.25E-03
60	GO:0016987: sigma factor activity	2.45E-03
61	GO:0009011: starch synthase activity	2.45E-03
62	GO:0001053: plastid sigma factor activity	2.45E-03
63	GO:0010011: auxin binding	2.45E-03
64	GO:0008453: alanine-glyoxylate transaminase activity	2.45E-03
65	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.77E-03
66	GO:0017137: Rab GTPase binding	3.14E-03
67	GO:0003989: acetyl-CoA carboxylase activity	3.14E-03
68	GO:0008381: mechanically-gated ion channel activity	3.14E-03
69	GO:0004556: alpha-amylase activity	3.88E-03
70	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	3.88E-03
71	GO:0042578: phosphoric ester hydrolase activity	3.88E-03
72	GO:0004332: fructose-bisphosphate aldolase activity	3.88E-03
73	GO:0048038: quinone binding	4.55E-03
74	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	4.67E-03
75	GO:0004017: adenylate kinase activity	4.67E-03
76	GO:0015631: tubulin binding	4.67E-03
77	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	4.67E-03
78	GO:0019900: kinase binding	4.67E-03
79	GO:0005242: inward rectifier potassium channel activity	4.67E-03
80	GO:0004518: nuclease activity	4.86E-03
81	GO:0008237: metallopeptidase activity	5.86E-03
82	GO:0016597: amino acid binding	6.21E-03
83	GO:0016413: O-acetyltransferase activity	6.21E-03
84	GO:0043022: ribosome binding	6.41E-03
85	GO:0004033: aldo-keto reductase (NADP) activity	6.41E-03
86	GO:0016301: kinase activity	6.56E-03
87	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	7.36E-03
88	GO:0005509: calcium ion binding	7.56E-03
89	GO:0102483: scopolin beta-glucosidase activity	7.76E-03
90	GO:0008236: serine-type peptidase activity	8.18E-03
91	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	8.35E-03
92	GO:0003747: translation release factor activity	8.35E-03
93	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	8.60E-03
94	GO:0005384: manganese ion transmembrane transporter activity	9.38E-03
95	GO:0004222: metalloendopeptidase activity	9.49E-03
96	GO:0004673: protein histidine kinase activity	1.05E-02
97	GO:0015386: potassium:proton antiporter activity	1.16E-02
98	GO:0008422: beta-glucosidase activity	1.19E-02
99	GO:0005515: protein binding	1.35E-02
100	GO:0004565: beta-galactosidase activity	1.40E-02
101	GO:0004022: alcohol dehydrogenase (NAD) activity	1.40E-02
102	GO:0015095: magnesium ion transmembrane transporter activity	1.40E-02
103	GO:0016491: oxidoreductase activity	1.51E-02
104	GO:0043621: protein self-association	1.53E-02
105	GO:0003714: transcription corepressor activity	1.92E-02
106	GO:0004407: histone deacetylase activity	1.92E-02
107	GO:0015079: potassium ion transmembrane transporter activity	2.06E-02
108	GO:0043424: protein histidine kinase binding	2.06E-02
109	GO:0003777: microtubule motor activity	2.11E-02
110	GO:0030551: cyclic nucleotide binding	2.97E-02
111	GO:0005249: voltage-gated potassium channel activity	2.97E-02
112	GO:0050662: coenzyme binding	3.30E-02
113	GO:0010181: FMN binding	3.30E-02
114	GO:0016853: isomerase activity	3.30E-02
115	GO:0019843: rRNA binding	3.40E-02
116	GO:0004252: serine-type endopeptidase activity	3.77E-02
117	GO:0051015: actin filament binding	3.99E-02
118	GO:0005524: ATP binding	4.24E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
3	GO:0009507: chloroplast	5.22E-37
4	GO:0009570: chloroplast stroma	3.56E-17
5	GO:0009534: chloroplast thylakoid	2.32E-16
6	GO:0009535: chloroplast thylakoid membrane	4.98E-14
7	GO:0009941: chloroplast envelope	1.87E-13
8	GO:0009543: chloroplast thylakoid lumen	2.54E-06
9	GO:0031969: chloroplast membrane	5.47E-05
10	GO:0009344: nitrite reductase complex [NAD(P)H]	3.60E-04
11	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.82E-04
12	GO:0009579: thylakoid	9.19E-04
13	GO:0030095: chloroplast photosystem II	1.34E-03
14	GO:0032432: actin filament bundle	1.83E-03
15	GO:0009531: secondary cell wall	1.83E-03
16	GO:0042651: thylakoid membrane	2.05E-03
17	GO:0031977: thylakoid lumen	2.05E-03
18	GO:0005828: kinetochore microtubule	2.45E-03
19	GO:0000776: kinetochore	3.14E-03
20	GO:0000777: condensed chromosome kinetochore	4.67E-03
21	GO:0010369: chromocenter	4.67E-03
22	GO:0009706: chloroplast inner membrane	5.21E-03
23	GO:0031359: integral component of chloroplast outer membrane	5.52E-03
24	GO:0009533: chloroplast stromal thylakoid	5.52E-03
25	GO:0009501: amyloplast	6.41E-03
26	GO:0010287: plastoglobule	6.48E-03
27	GO:0042644: chloroplast nucleoid	8.35E-03
28	GO:0005876: spindle microtubule	9.38E-03
29	GO:0016324: apical plasma membrane	1.05E-02
30	GO:0005884: actin filament	1.16E-02
31	GO:0032040: small-subunit processome	1.28E-02
32	GO:0009508: plastid chromosome	1.40E-02
33	GO:0009574: preprophase band	1.40E-02
34	GO:0009654: photosystem II oxygen evolving complex	2.06E-02
35	GO:0019898: extrinsic component of membrane	3.47E-02
36	GO:0009536: plastid	3.61E-02
37	GO:0000145: exocyst	3.81E-02
38	GO:0016021: integral component of membrane	3.93E-02
39	GO:0005759: mitochondrial matrix	4.26E-02
40	GO:0009295: nucleoid	4.35E-02
41	GO:0010319: stromule	4.35E-02
42	GO:0048046: apoplast	4.39E-02
43	GO:0009705: plant-type vacuole membrane	4.68E-02
44	GO:0030529: intracellular ribonucleoprotein complex	4.72E-02