co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G20750

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042493: response to drug	0.00E+00
2	GO:1905499: trichome papilla formation	0.00E+00
3	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
4	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
5	GO:2000121: regulation of removal of superoxide radicals	0.00E+00
6	GO:0006223: uracil salvage	0.00E+00
7	GO:0006642: triglyceride mobilization	0.00E+00
8	GO:0007638: mechanosensory behavior	0.00E+00
9	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
10	GO:0015995: chlorophyll biosynthetic process	1.48E-10
11	GO:0010207: photosystem II assembly	2.15E-06
12	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.05E-05
13	GO:0090391: granum assembly	1.59E-05
14	GO:0009828: plant-type cell wall loosening	4.66E-05
15	GO:0015976: carbon utilization	6.35E-05
16	GO:0009765: photosynthesis, light harvesting	6.35E-05
17	GO:0010027: thylakoid membrane organization	6.55E-05
18	GO:0031365: N-terminal protein amino acid modification	1.00E-04
19	GO:0071555: cell wall organization	1.52E-04
20	GO:0010196: nonphotochemical quenching	2.57E-04
21	GO:0015979: photosynthesis	2.74E-04
22	GO:0042335: cuticle development	2.90E-04
23	GO:1904964: positive regulation of phytol biosynthetic process	3.14E-04
24	GO:0043686: co-translational protein modification	3.14E-04
25	GO:1902458: positive regulation of stomatal opening	3.14E-04
26	GO:0034337: RNA folding	3.14E-04
27	GO:0071588: hydrogen peroxide mediated signaling pathway	3.14E-04
28	GO:0060627: regulation of vesicle-mediated transport	3.14E-04
29	GO:1904966: positive regulation of vitamin E biosynthetic process	3.14E-04
30	GO:0010442: guard cell morphogenesis	3.14E-04
31	GO:0046166: glyceraldehyde-3-phosphate biosynthetic process	3.14E-04
32	GO:0009664: plant-type cell wall organization	3.66E-04
33	GO:0006783: heme biosynthetic process	4.78E-04
34	GO:0006949: syncytium formation	6.60E-04
35	GO:0006782: protoporphyrinogen IX biosynthetic process	6.60E-04
36	GO:1903426: regulation of reactive oxygen species biosynthetic process	6.87E-04
37	GO:0043039: tRNA aminoacylation	6.87E-04
38	GO:0052541: plant-type cell wall cellulose metabolic process	6.87E-04
39	GO:1902326: positive regulation of chlorophyll biosynthetic process	6.87E-04
40	GO:0042254: ribosome biogenesis	7.02E-04
41	GO:0010411: xyloglucan metabolic process	8.37E-04
42	GO:0032504: multicellular organism reproduction	1.11E-03
43	GO:0046168: glycerol-3-phosphate catabolic process	1.11E-03
44	GO:0010020: chloroplast fission	1.11E-03
45	GO:0019563: glycerol catabolic process	1.11E-03
46	GO:0007568: aging	1.14E-03
47	GO:0006869: lipid transport	1.59E-03
48	GO:0009413: response to flooding	1.60E-03
49	GO:0007231: osmosensory signaling pathway	1.60E-03
50	GO:0071484: cellular response to light intensity	1.60E-03
51	GO:0006072: glycerol-3-phosphate metabolic process	1.60E-03
52	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.60E-03
53	GO:0009650: UV protection	1.60E-03
54	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.60E-03
55	GO:0010731: protein glutathionylation	1.60E-03
56	GO:0006424: glutamyl-tRNA aminoacylation	1.60E-03
57	GO:0050482: arachidonic acid secretion	1.60E-03
58	GO:0016998: cell wall macromolecule catabolic process	1.84E-03
59	GO:0042546: cell wall biogenesis	1.85E-03
60	GO:0030245: cellulose catabolic process	2.02E-03
61	GO:0010037: response to carbon dioxide	2.14E-03
62	GO:0009956: radial pattern formation	2.14E-03
63	GO:0019464: glycine decarboxylation via glycine cleavage system	2.14E-03
64	GO:0006085: acetyl-CoA biosynthetic process	2.14E-03
65	GO:0006183: GTP biosynthetic process	2.14E-03
66	GO:2000122: negative regulation of stomatal complex development	2.14E-03
67	GO:0033500: carbohydrate homeostasis	2.14E-03
68	GO:0006546: glycine catabolic process	2.14E-03
69	GO:0006021: inositol biosynthetic process	2.14E-03
70	GO:0044206: UMP salvage	2.14E-03
71	GO:0016123: xanthophyll biosynthetic process	2.74E-03
72	GO:0006665: sphingolipid metabolic process	2.74E-03
73	GO:0034052: positive regulation of plant-type hypersensitive response	2.74E-03
74	GO:0048359: mucilage metabolic process involved in seed coat development	2.74E-03
75	GO:0016120: carotene biosynthetic process	2.74E-03
76	GO:0032543: mitochondrial translation	2.74E-03
77	GO:0043097: pyrimidine nucleoside salvage	2.74E-03
78	GO:0045038: protein import into chloroplast thylakoid membrane	2.74E-03
79	GO:0000413: protein peptidyl-prolyl isomerization	2.80E-03
80	GO:0080022: primary root development	2.80E-03
81	GO:0009826: unidimensional cell growth	2.97E-03
82	GO:0009658: chloroplast organization	3.14E-03
83	GO:0010405: arabinogalactan protein metabolic process	3.38E-03
84	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.38E-03
85	GO:0006655: phosphatidylglycerol biosynthetic process	3.38E-03
86	GO:0010190: cytochrome b6f complex assembly	3.38E-03
87	GO:0006206: pyrimidine nucleobase metabolic process	3.38E-03
88	GO:0018258: protein O-linked glycosylation via hydroxyproline	3.38E-03
89	GO:0046855: inositol phosphate dephosphorylation	3.38E-03
90	GO:0009854: oxidative photosynthetic carbon pathway	4.06E-03
91	GO:0010019: chloroplast-nucleus signaling pathway	4.06E-03
92	GO:0010555: response to mannitol	4.06E-03
93	GO:0071470: cellular response to osmotic stress	4.06E-03
94	GO:0048280: vesicle fusion with Golgi apparatus	4.06E-03
95	GO:1901259: chloroplast rRNA processing	4.06E-03
96	GO:0009735: response to cytokinin	4.59E-03
97	GO:0009395: phospholipid catabolic process	4.80E-03
98	GO:0006400: tRNA modification	4.80E-03
99	GO:2000070: regulation of response to water deprivation	5.57E-03
100	GO:0016559: peroxisome fission	5.57E-03
101	GO:0006644: phospholipid metabolic process	5.57E-03
102	GO:0009819: drought recovery	5.57E-03
103	GO:0009642: response to light intensity	5.57E-03
104	GO:0043068: positive regulation of programmed cell death	5.57E-03
105	GO:0045454: cell redox homeostasis	5.74E-03
106	GO:0042128: nitrate assimilation	6.00E-03
107	GO:0017004: cytochrome complex assembly	6.39E-03
108	GO:0015996: chlorophyll catabolic process	6.39E-03
109	GO:0007186: G-protein coupled receptor signaling pathway	6.39E-03
110	GO:0032544: plastid translation	6.39E-03
111	GO:0006633: fatty acid biosynthetic process	7.18E-03
112	GO:0015780: nucleotide-sugar transport	7.24E-03
113	GO:0010206: photosystem II repair	7.24E-03
114	GO:0045490: pectin catabolic process	8.09E-03
115	GO:0006779: porphyrin-containing compound biosynthetic process	8.14E-03
116	GO:0042761: very long-chain fatty acid biosynthetic process	8.14E-03
117	GO:0006896: Golgi to vacuole transport	9.07E-03
118	GO:0009870: defense response signaling pathway, resistance gene-dependent	9.07E-03
119	GO:0034599: cellular response to oxidative stress	9.31E-03
120	GO:0018119: peptidyl-cysteine S-nitrosylation	1.00E-02
121	GO:0010015: root morphogenesis	1.00E-02
122	GO:0006816: calcium ion transport	1.00E-02
123	GO:0006415: translational termination	1.00E-02
124	GO:0006790: sulfur compound metabolic process	1.11E-02
125	GO:0016024: CDP-diacylglycerol biosynthetic process	1.11E-02
126	GO:0045037: protein import into chloroplast stroma	1.11E-02
127	GO:0006412: translation	1.18E-02
128	GO:0050826: response to freezing	1.21E-02
129	GO:0006094: gluconeogenesis	1.21E-02
130	GO:0009933: meristem structural organization	1.32E-02
131	GO:0019253: reductive pentose-phosphate cycle	1.32E-02
132	GO:0005975: carbohydrate metabolic process	1.34E-02
133	GO:0070588: calcium ion transmembrane transport	1.43E-02
134	GO:0046854: phosphatidylinositol phosphorylation	1.43E-02
135	GO:0010167: response to nitrate	1.43E-02
136	GO:0019853: L-ascorbic acid biosynthetic process	1.43E-02
137	GO:0042538: hyperosmotic salinity response	1.45E-02
138	GO:0006071: glycerol metabolic process	1.54E-02
139	GO:0010025: wax biosynthetic process	1.54E-02
140	GO:0019344: cysteine biosynthetic process	1.66E-02
141	GO:0009116: nucleoside metabolic process	1.66E-02
142	GO:0051017: actin filament bundle assembly	1.66E-02
143	GO:0006418: tRNA aminoacylation for protein translation	1.78E-02
144	GO:0010026: trichome differentiation	1.78E-02
145	GO:0007017: microtubule-based process	1.78E-02
146	GO:0006096: glycolytic process	1.84E-02
147	GO:0048511: rhythmic process	1.91E-02
148	GO:0009814: defense response, incompatible interaction	2.03E-02
149	GO:0016226: iron-sulfur cluster assembly	2.03E-02
150	GO:0006012: galactose metabolic process	2.16E-02
151	GO:0009411: response to UV	2.16E-02
152	GO:0010091: trichome branching	2.29E-02
153	GO:0019722: calcium-mediated signaling	2.29E-02
154	GO:0055114: oxidation-reduction process	2.42E-02
155	GO:0016117: carotenoid biosynthetic process	2.43E-02
156	GO:0042147: retrograde transport, endosome to Golgi	2.43E-02
157	GO:0010182: sugar mediated signaling pathway	2.71E-02
158	GO:0010305: leaf vascular tissue pattern formation	2.71E-02
159	GO:0042752: regulation of circadian rhythm	2.85E-02
160	GO:0016042: lipid catabolic process	2.92E-02
161	GO:0006623: protein targeting to vacuole	3.00E-02
162	GO:0006629: lipid metabolic process	3.02E-02
163	GO:0071554: cell wall organization or biogenesis	3.15E-02
164	GO:0000302: response to reactive oxygen species	3.15E-02
165	GO:0006891: intra-Golgi vesicle-mediated transport	3.15E-02
166	GO:0032502: developmental process	3.30E-02
167	GO:0010583: response to cyclopentenone	3.30E-02
168	GO:0007267: cell-cell signaling	3.77E-02
169	GO:0051607: defense response to virus	3.92E-02
170	GO:0000910: cytokinesis	3.92E-02
171	GO:0009739: response to gibberellin	4.28E-02
172	GO:0007166: cell surface receptor signaling pathway	4.37E-02
173	GO:0009627: systemic acquired resistance	4.42E-02
174	GO:0006888: ER to Golgi vesicle-mediated transport	4.59E-02
175	GO:0009817: defense response to fungus, incompatible interaction	4.93E-02
176	GO:0018298: protein-chromophore linkage	4.93E-02
177	GO:0006508: proteolysis	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0046408: chlorophyll synthetase activity	0.00E+00
2	GO:0019146: arabinose-5-phosphate isomerase activity	0.00E+00
3	GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity	0.00E+00
4	GO:0047889: ferredoxin-nitrate reductase activity	0.00E+00
5	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
6	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
7	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
8	GO:0016631: enoyl-[acyl-carrier-protein] reductase activity	0.00E+00
9	GO:0008887: glycerate kinase activity	0.00E+00
10	GO:0048307: ferredoxin-nitrite reductase activity	0.00E+00
11	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
12	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
13	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
14	GO:0050421: nitrite reductase (NO-forming) activity	0.00E+00
15	GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity	0.00E+00
16	GO:0016851: magnesium chelatase activity	1.66E-07
17	GO:0051920: peroxiredoxin activity	3.66E-06
18	GO:0016209: antioxidant activity	8.86E-06
19	GO:0019843: rRNA binding	1.76E-05
20	GO:0004328: formamidase activity	3.14E-04
21	GO:0010347: L-galactose-1-phosphate phosphatase activity	3.14E-04
22	GO:0030794: (S)-coclaurine-N-methyltransferase activity	3.14E-04
23	GO:0004560: alpha-L-fucosidase activity	3.14E-04
24	GO:0004807: triose-phosphate isomerase activity	3.14E-04
25	GO:0004831: tyrosine-tRNA ligase activity	3.14E-04
26	GO:0009374: biotin binding	3.14E-04
27	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	3.14E-04
28	GO:0004853: uroporphyrinogen decarboxylase activity	3.14E-04
29	GO:0042586: peptide deformylase activity	3.14E-04
30	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.26E-04
31	GO:0016762: xyloglucan:xyloglucosyl transferase activity	4.24E-04
32	GO:0008883: glutamyl-tRNA reductase activity	6.87E-04
33	GO:0003938: IMP dehydrogenase activity	6.87E-04
34	GO:0052832: inositol monophosphate 3-phosphatase activity	6.87E-04
35	GO:0008934: inositol monophosphate 1-phosphatase activity	6.87E-04
36	GO:0052833: inositol monophosphate 4-phosphatase activity	6.87E-04
37	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	6.87E-04
38	GO:0016798: hydrolase activity, acting on glycosyl bonds	8.37E-04
39	GO:0004089: carbonate dehydratase activity	9.84E-04
40	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	1.11E-03
41	GO:0010277: chlorophyllide a oxygenase [overall] activity	1.11E-03
42	GO:0004148: dihydrolipoyl dehydrogenase activity	1.11E-03
43	GO:0004751: ribose-5-phosphate isomerase activity	1.11E-03
44	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.11E-03
45	GO:0052689: carboxylic ester hydrolase activity	1.18E-03
46	GO:0005528: FK506 binding	1.52E-03
47	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.60E-03
48	GO:0003878: ATP citrate synthase activity	1.60E-03
49	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.60E-03
50	GO:0016149: translation release factor activity, codon specific	1.60E-03
51	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.60E-03
52	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	1.60E-03
53	GO:0004659: prenyltransferase activity	2.14E-03
54	GO:0004845: uracil phosphoribosyltransferase activity	2.14E-03
55	GO:1990137: plant seed peroxidase activity	2.14E-03
56	GO:0052793: pectin acetylesterase activity	2.14E-03
57	GO:0043495: protein anchor	2.14E-03
58	GO:0030570: pectate lyase activity	2.20E-03
59	GO:0008810: cellulase activity	2.20E-03
60	GO:0003989: acetyl-CoA carboxylase activity	2.74E-03
61	GO:0009922: fatty acid elongase activity	2.74E-03
62	GO:0004623: phospholipase A2 activity	2.74E-03
63	GO:0004040: amidase activity	2.74E-03
64	GO:0016788: hydrolase activity, acting on ester bonds	3.24E-03
65	GO:1990714: hydroxyproline O-galactosyltransferase activity	3.38E-03
66	GO:0004130: cytochrome-c peroxidase activity	3.38E-03
67	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	3.38E-03
68	GO:0016688: L-ascorbate peroxidase activity	3.38E-03
69	GO:0008289: lipid binding	3.51E-03
70	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	4.06E-03
71	GO:0051753: mannan synthase activity	4.06E-03
72	GO:0004849: uridine kinase activity	4.06E-03
73	GO:0008235: metalloexopeptidase activity	4.80E-03
74	GO:0019899: enzyme binding	4.80E-03
75	GO:0004034: aldose 1-epimerase activity	5.57E-03
76	GO:0052747: sinapyl alcohol dehydrogenase activity	5.57E-03
77	GO:0004033: aldo-keto reductase (NADP) activity	5.57E-03
78	GO:0003747: translation release factor activity	7.24E-03
79	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	7.24E-03
80	GO:0008889: glycerophosphodiester phosphodiesterase activity	7.24E-03
81	GO:0003735: structural constituent of ribosome	8.28E-03
82	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	8.71E-03
83	GO:0004177: aminopeptidase activity	1.00E-02
84	GO:0047372: acylglycerol lipase activity	1.00E-02
85	GO:0051539: 4 iron, 4 sulfur cluster binding	1.02E-02
86	GO:0042802: identical protein binding	1.10E-02
87	GO:0045551: cinnamyl-alcohol dehydrogenase activity	1.11E-02
88	GO:0005262: calcium channel activity	1.21E-02
89	GO:0005525: GTP binding	1.28E-02
90	GO:0004601: peroxidase activity	1.41E-02
91	GO:0051536: iron-sulfur cluster binding	1.66E-02
92	GO:0030599: pectinesterase activity	2.09E-02
93	GO:0022891: substrate-specific transmembrane transporter activity	2.16E-02
94	GO:0008514: organic anion transmembrane transporter activity	2.29E-02
95	GO:0004812: aminoacyl-tRNA ligase activity	2.43E-02
96	GO:0003713: transcription coactivator activity	2.71E-02
97	GO:0008080: N-acetyltransferase activity	2.71E-02
98	GO:0016853: isomerase activity	2.85E-02
99	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.85E-02
100	GO:0016829: lyase activity	3.00E-02
101	GO:0003924: GTPase activity	3.02E-02
102	GO:0051015: actin filament binding	3.45E-02
103	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.57E-02
104	GO:0016722: oxidoreductase activity, oxidizing metal ions	3.77E-02
105	GO:0008237: metallopeptidase activity	3.77E-02
106	GO:0005200: structural constituent of cytoskeleton	3.77E-02
107	GO:0016413: O-acetyltransferase activity	3.92E-02
108	GO:0016168: chlorophyll binding	4.25E-02
109	GO:0005509: calcium ion binding	4.68E-02

Rank	GO Term	Adjusted P value
1	GO:0005835: fatty acid synthase complex	0.00E+00
2	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
3	GO:0009515: granal stacked thylakoid	0.00E+00
4	GO:0009507: chloroplast	2.04E-32
5	GO:0009570: chloroplast stroma	7.97E-27
6	GO:0009534: chloroplast thylakoid	8.97E-20
7	GO:0009535: chloroplast thylakoid membrane	3.51E-18
8	GO:0009579: thylakoid	8.98E-15
9	GO:0009941: chloroplast envelope	1.25E-12
10	GO:0009543: chloroplast thylakoid lumen	5.65E-12
11	GO:0031977: thylakoid lumen	3.91E-11
12	GO:0048046: apoplast	1.96E-08
13	GO:0010007: magnesium chelatase complex	3.42E-08
14	GO:0005618: cell wall	3.71E-08
15	GO:0009505: plant-type cell wall	3.32E-07
16	GO:0046658: anchored component of plasma membrane	7.86E-07
17	GO:0031225: anchored component of membrane	6.58E-05
18	GO:0005576: extracellular region	1.27E-04
19	GO:0042651: thylakoid membrane	1.40E-04
20	GO:0009923: fatty acid elongase complex	3.14E-04
21	GO:0009706: chloroplast inner membrane	7.07E-04
22	GO:0009528: plastid inner membrane	1.11E-03
23	GO:0009317: acetyl-CoA carboxylase complex	1.11E-03
24	GO:0005875: microtubule associated complex	1.37E-03
25	GO:0005960: glycine cleavage complex	1.60E-03
26	GO:0009331: glycerol-3-phosphate dehydrogenase complex	1.60E-03
27	GO:0009346: citrate lyase complex	1.60E-03
28	GO:0009654: photosystem II oxygen evolving complex	1.68E-03
29	GO:0009532: plastid stroma	1.84E-03
30	GO:0005840: ribosome	2.06E-03
31	GO:0009527: plastid outer membrane	2.14E-03
32	GO:0019898: extrinsic component of membrane	3.47E-03
33	GO:0031969: chloroplast membrane	4.37E-03
34	GO:0010319: stromule	4.79E-03
35	GO:0009533: chloroplast stromal thylakoid	4.80E-03
36	GO:0012507: ER to Golgi transport vesicle membrane	5.57E-03
37	GO:0005811: lipid particle	6.39E-03
38	GO:0009707: chloroplast outer membrane	7.02E-03
39	GO:0045298: tubulin complex	7.24E-03
40	GO:0009536: plastid	8.84E-03
41	GO:0000311: plastid large ribosomal subunit	1.11E-02
42	GO:0032040: small-subunit processome	1.11E-02
43	GO:0005886: plasma membrane	1.21E-02
44	GO:0030095: chloroplast photosystem II	1.32E-02
45	GO:0043234: protein complex	1.54E-02
46	GO:0016020: membrane	1.61E-02
47	GO:0015935: small ribosomal subunit	1.91E-02
48	GO:0031410: cytoplasmic vesicle	2.03E-02
49	GO:0015629: actin cytoskeleton	2.16E-02
50	GO:0009523: photosystem II	3.00E-02
51	GO:0009504: cell plate	3.00E-02