co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G20290

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006399: tRNA metabolic process	0.00E+00
2	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
3	GO:0002184: cytoplasmic translational termination	0.00E+00
4	GO:0090706: specification of plant organ position	0.00E+00
5	GO:0045014: negative regulation of transcription by glucose	0.00E+00
6	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
7	GO:1901698: response to nitrogen compound	0.00E+00
8	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
9	GO:0006642: triglyceride mobilization	0.00E+00
10	GO:0000372: Group I intron splicing	0.00E+00
11	GO:0032544: plastid translation	5.63E-09
12	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.72E-06
13	GO:0010275: NAD(P)H dehydrogenase complex assembly	8.79E-06
14	GO:0010115: regulation of abscisic acid biosynthetic process	8.79E-06
15	GO:0015995: chlorophyll biosynthetic process	1.90E-05
16	GO:0032543: mitochondrial translation	1.76E-04
17	GO:0042549: photosystem II stabilization	2.51E-04
18	GO:0034628: 'de novo' NAD biosynthetic process from aspartate	4.45E-04
19	GO:1902458: positive regulation of stomatal opening	4.45E-04
20	GO:0034337: RNA folding	4.45E-04
21	GO:0010450: inflorescence meristem growth	4.45E-04
22	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	4.45E-04
23	GO:0000476: maturation of 4.5S rRNA	4.45E-04
24	GO:0000967: rRNA 5'-end processing	4.45E-04
25	GO:0043266: regulation of potassium ion transport	4.45E-04
26	GO:0006824: cobalt ion transport	4.45E-04
27	GO:0010480: microsporocyte differentiation	4.45E-04
28	GO:0046166: glyceraldehyde-3-phosphate biosynthetic process	4.45E-04
29	GO:0006723: cuticle hydrocarbon biosynthetic process	4.45E-04
30	GO:0000481: maturation of 5S rRNA	4.45E-04
31	GO:0042547: cell wall modification involved in multidimensional cell growth	4.45E-04
32	GO:2000021: regulation of ion homeostasis	4.45E-04
33	GO:1903426: regulation of reactive oxygen species biosynthetic process	9.61E-04
34	GO:0010289: homogalacturonan biosynthetic process	9.61E-04
35	GO:0010270: photosystem II oxygen evolving complex assembly	9.61E-04
36	GO:0034470: ncRNA processing	9.61E-04
37	GO:0006695: cholesterol biosynthetic process	9.61E-04
38	GO:1900871: chloroplast mRNA modification	9.61E-04
39	GO:0045717: negative regulation of fatty acid biosynthetic process	9.61E-04
40	GO:0034755: iron ion transmembrane transport	9.61E-04
41	GO:0010027: thylakoid membrane organization	1.30E-03
42	GO:0042128: nitrate assimilation	1.49E-03
43	GO:0045165: cell fate commitment	1.57E-03
44	GO:0032504: multicellular organism reproduction	1.57E-03
45	GO:0019563: glycerol catabolic process	1.57E-03
46	GO:0043447: alkane biosynthetic process	1.57E-03
47	GO:0006518: peptide metabolic process	1.57E-03
48	GO:0006013: mannose metabolic process	1.57E-03
49	GO:0071705: nitrogen compound transport	1.57E-03
50	GO:0051176: positive regulation of sulfur metabolic process	1.57E-03
51	GO:0045493: xylan catabolic process	1.57E-03
52	GO:0009658: chloroplast organization	1.69E-03
53	GO:0010207: photosystem II assembly	1.83E-03
54	GO:0034059: response to anoxia	2.27E-03
55	GO:0009226: nucleotide-sugar biosynthetic process	2.27E-03
56	GO:0006424: glutamyl-tRNA aminoacylation	2.27E-03
57	GO:0016556: mRNA modification	2.27E-03
58	GO:2001141: regulation of RNA biosynthetic process	2.27E-03
59	GO:0010025: wax biosynthetic process	2.29E-03
60	GO:0006418: tRNA aminoacylation for protein translation	2.80E-03
61	GO:0006808: regulation of nitrogen utilization	3.05E-03
62	GO:0071249: cellular response to nitrate	3.05E-03
63	GO:0045727: positive regulation of translation	3.05E-03
64	GO:0061077: chaperone-mediated protein folding	3.08E-03
65	GO:0016226: iron-sulfur cluster assembly	3.37E-03
66	GO:0009735: response to cytokinin	3.49E-03
67	GO:1902183: regulation of shoot apical meristem development	3.90E-03
68	GO:0009435: NAD biosynthetic process	3.90E-03
69	GO:0010158: abaxial cell fate specification	3.90E-03
70	GO:0009247: glycolipid biosynthetic process	3.90E-03
71	GO:0045038: protein import into chloroplast thylakoid membrane	3.90E-03
72	GO:0009306: protein secretion	4.00E-03
73	GO:0006412: translation	4.12E-03
74	GO:0000413: protein peptidyl-prolyl isomerization	4.69E-03
75	GO:0055114: oxidation-reduction process	4.72E-03
76	GO:0006354: DNA-templated transcription, elongation	4.83E-03
77	GO:0010405: arabinogalactan protein metabolic process	4.83E-03
78	GO:0006751: glutathione catabolic process	4.83E-03
79	GO:0006655: phosphatidylglycerol biosynthetic process	4.83E-03
80	GO:0010190: cytochrome b6f complex assembly	4.83E-03
81	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	4.83E-03
82	GO:0006828: manganese ion transport	4.83E-03
83	GO:0018258: protein O-linked glycosylation via hydroxyproline	4.83E-03
84	GO:0000741: karyogamy	4.83E-03
85	GO:0006561: proline biosynthetic process	4.83E-03
86	GO:0006857: oligopeptide transport	5.45E-03
87	GO:0009793: embryo development ending in seed dormancy	5.81E-03
88	GO:0042026: protein refolding	5.83E-03
89	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	5.83E-03
90	GO:0006458: 'de novo' protein folding	5.83E-03
91	GO:0006694: steroid biosynthetic process	5.83E-03
92	GO:0009610: response to symbiotic fungus	6.89E-03
93	GO:0009395: phospholipid catabolic process	6.89E-03
94	GO:0009772: photosynthetic electron transport in photosystem II	6.89E-03
95	GO:0048437: floral organ development	6.89E-03
96	GO:0030163: protein catabolic process	7.13E-03
97	GO:0042254: ribosome biogenesis	7.18E-03
98	GO:0048564: photosystem I assembly	8.02E-03
99	GO:0030091: protein repair	8.02E-03
100	GO:0008610: lipid biosynthetic process	8.02E-03
101	GO:0019375: galactolipid biosynthetic process	8.02E-03
102	GO:0032508: DNA duplex unwinding	8.02E-03
103	GO:2000070: regulation of response to water deprivation	8.02E-03
104	GO:0009808: lignin metabolic process	9.21E-03
105	GO:0010093: specification of floral organ identity	9.21E-03
106	GO:0009932: cell tip growth	9.21E-03
107	GO:0071482: cellular response to light stimulus	9.21E-03
108	GO:0006526: arginine biosynthetic process	9.21E-03
109	GO:0009060: aerobic respiration	1.05E-02
110	GO:0009051: pentose-phosphate shunt, oxidative branch	1.05E-02
111	GO:0010206: photosystem II repair	1.05E-02
112	GO:0045337: farnesyl diphosphate biosynthetic process	1.05E-02
113	GO:2000024: regulation of leaf development	1.05E-02
114	GO:0033384: geranyl diphosphate biosynthetic process	1.05E-02
115	GO:0006783: heme biosynthetic process	1.05E-02
116	GO:0000373: Group II intron splicing	1.05E-02
117	GO:0048589: developmental growth	1.05E-02
118	GO:0010205: photoinhibition	1.18E-02
119	GO:0042761: very long-chain fatty acid biosynthetic process	1.18E-02
120	GO:0000160: phosphorelay signal transduction system	1.25E-02
121	GO:0006782: protoporphyrinogen IX biosynthetic process	1.31E-02
122	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.31E-02
123	GO:0009688: abscisic acid biosynthetic process	1.31E-02
124	GO:0006468: protein phosphorylation	1.34E-02
125	GO:0006816: calcium ion transport	1.46E-02
126	GO:0019684: photosynthesis, light reaction	1.46E-02
127	GO:0009089: lysine biosynthetic process via diaminopimelate	1.46E-02
128	GO:0009073: aromatic amino acid family biosynthetic process	1.46E-02
129	GO:0006415: translational termination	1.46E-02
130	GO:0006352: DNA-templated transcription, initiation	1.46E-02
131	GO:0009750: response to fructose	1.46E-02
132	GO:0018119: peptidyl-cysteine S-nitrosylation	1.46E-02
133	GO:0048229: gametophyte development	1.46E-02
134	GO:0016051: carbohydrate biosynthetic process	1.51E-02
135	GO:0007623: circadian rhythm	1.57E-02
136	GO:0012501: programmed cell death	1.60E-02
137	GO:0015706: nitrate transport	1.60E-02
138	GO:0010152: pollen maturation	1.60E-02
139	GO:0016024: CDP-diacylglycerol biosynthetic process	1.60E-02
140	GO:0032259: methylation	1.63E-02
141	GO:0009718: anthocyanin-containing compound biosynthetic process	1.75E-02
142	GO:0010075: regulation of meristem growth	1.75E-02
143	GO:0006094: gluconeogenesis	1.75E-02
144	GO:0009767: photosynthetic electron transport chain	1.75E-02
145	GO:0010102: lateral root morphogenesis	1.75E-02
146	GO:0006006: glucose metabolic process	1.75E-02
147	GO:0009934: regulation of meristem structural organization	1.91E-02
148	GO:0048768: root hair cell tip growth	1.91E-02
149	GO:0010143: cutin biosynthetic process	1.91E-02
150	GO:0009933: meristem structural organization	1.91E-02
151	GO:0019253: reductive pentose-phosphate cycle	1.91E-02
152	GO:0008152: metabolic process	2.02E-02
153	GO:0010167: response to nitrate	2.07E-02
154	GO:0010030: positive regulation of seed germination	2.07E-02
155	GO:0006636: unsaturated fatty acid biosynthetic process	2.24E-02
156	GO:0005992: trehalose biosynthetic process	2.41E-02
157	GO:0009944: polarity specification of adaxial/abaxial axis	2.41E-02
158	GO:0009664: plant-type cell wall organization	2.45E-02
159	GO:0009736: cytokinin-activated signaling pathway	2.63E-02
160	GO:0009814: defense response, incompatible interaction	2.95E-02
161	GO:0006096: glycolytic process	3.11E-02
162	GO:0071369: cellular response to ethylene stimulus	3.14E-02
163	GO:0009723: response to ethylene	3.27E-02
164	GO:0048443: stamen development	3.33E-02
165	GO:0019722: calcium-mediated signaling	3.33E-02
166	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	3.53E-02
167	GO:0048653: anther development	3.73E-02
168	GO:0042631: cellular response to water deprivation	3.73E-02
169	GO:0042335: cuticle development	3.73E-02
170	GO:0000271: polysaccharide biosynthetic process	3.73E-02
171	GO:0080022: primary root development	3.73E-02
172	GO:0010182: sugar mediated signaling pathway	3.94E-02
173	GO:0006520: cellular amino acid metabolic process	3.94E-02
174	GO:0045489: pectin biosynthetic process	3.94E-02
175	GO:0010154: fruit development	3.94E-02
176	GO:0010197: polar nucleus fusion	3.94E-02
177	GO:0015979: photosynthesis	4.20E-02
178	GO:0071555: cell wall organization	4.37E-02
179	GO:0016132: brassinosteroid biosynthetic process	4.57E-02
180	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	4.57E-02
181	GO:0071554: cell wall organization or biogenesis	4.57E-02
182	GO:0000302: response to reactive oxygen species	4.57E-02
183	GO:0002229: defense response to oomycetes	4.57E-02
184	GO:0048235: pollen sperm cell differentiation	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
2	GO:1990534: thermospermine oxidase activity	0.00E+00
3	GO:0050614: delta24-sterol reductase activity	0.00E+00
4	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
5	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
6	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
7	GO:0008987: quinolinate synthetase A activity	0.00E+00
8	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
9	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
10	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
11	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
12	GO:0004823: leucine-tRNA ligase activity	0.00E+00
13	GO:0019843: rRNA binding	1.94E-09
14	GO:0005528: FK506 binding	3.95E-07
15	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	6.06E-07
16	GO:0002161: aminoacyl-tRNA editing activity	3.02E-05
17	GO:0016851: magnesium chelatase activity	6.54E-05
18	GO:0051920: peroxiredoxin activity	3.37E-04
19	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	4.45E-04
20	GO:0004807: triose-phosphate isomerase activity	4.45E-04
21	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	4.45E-04
22	GO:0004853: uroporphyrinogen decarboxylase activity	4.45E-04
23	GO:0045485: omega-6 fatty acid desaturase activity	4.45E-04
24	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	4.45E-04
25	GO:0004328: formamidase activity	4.45E-04
26	GO:0016209: antioxidant activity	5.41E-04
27	GO:0003735: structural constituent of ribosome	5.56E-04
28	GO:0003839: gamma-glutamylcyclotransferase activity	9.61E-04
29	GO:0009977: proton motive force dependent protein transmembrane transporter activity	9.61E-04
30	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	9.61E-04
31	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	9.61E-04
32	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	9.61E-04
33	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.57E-03
34	GO:0017150: tRNA dihydrouridine synthase activity	1.57E-03
35	GO:0003913: DNA photolyase activity	1.57E-03
36	GO:0004148: dihydrolipoyl dehydrogenase activity	1.57E-03
37	GO:0030267: glyoxylate reductase (NADP) activity	1.57E-03
38	GO:0004022: alcohol dehydrogenase (NAD) activity	1.62E-03
39	GO:0043023: ribosomal large subunit binding	2.27E-03
40	GO:0008097: 5S rRNA binding	2.27E-03
41	GO:0001872: (1->3)-beta-D-glucan binding	2.27E-03
42	GO:0035250: UDP-galactosyltransferase activity	2.27E-03
43	GO:0016149: translation release factor activity, codon specific	2.27E-03
44	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	2.27E-03
45	GO:0001053: plastid sigma factor activity	3.05E-03
46	GO:0010011: auxin binding	3.05E-03
47	GO:0004345: glucose-6-phosphate dehydrogenase activity	3.05E-03
48	GO:0016836: hydro-lyase activity	3.05E-03
49	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	3.05E-03
50	GO:0016987: sigma factor activity	3.05E-03
51	GO:0009044: xylan 1,4-beta-xylosidase activity	3.05E-03
52	GO:0046556: alpha-L-arabinofuranosidase activity	3.05E-03
53	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	3.37E-03
54	GO:0030570: pectate lyase activity	3.68E-03
55	GO:0003959: NADPH dehydrogenase activity	3.90E-03
56	GO:0004812: aminoacyl-tRNA ligase activity	4.34E-03
57	GO:0016787: hydrolase activity	4.78E-03
58	GO:0008200: ion channel inhibitor activity	4.83E-03
59	GO:1990714: hydroxyproline O-galactosyltransferase activity	4.83E-03
60	GO:0004130: cytochrome-c peroxidase activity	4.83E-03
61	GO:0035673: oligopeptide transmembrane transporter activity	4.83E-03
62	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	4.83E-03
63	GO:0042578: phosphoric ester hydrolase activity	4.83E-03
64	GO:0004672: protein kinase activity	5.00E-03
65	GO:0004559: alpha-mannosidase activity	5.83E-03
66	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	5.83E-03
67	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	5.83E-03
68	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	5.83E-03
69	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	5.83E-03
70	GO:0009881: photoreceptor activity	6.89E-03
71	GO:0000156: phosphorelay response regulator activity	7.13E-03
72	GO:0004674: protein serine/threonine kinase activity	7.84E-03
73	GO:0004033: aldo-keto reductase (NADP) activity	8.02E-03
74	GO:0005516: calmodulin binding	9.27E-03
75	GO:0016758: transferase activity, transferring hexosyl groups	1.01E-02
76	GO:0003747: translation release factor activity	1.05E-02
77	GO:0004337: geranyltranstransferase activity	1.05E-02
78	GO:0016491: oxidoreductase activity	1.06E-02
79	GO:0016829: lyase activity	1.15E-02
80	GO:0005381: iron ion transmembrane transporter activity	1.18E-02
81	GO:0005384: manganese ion transmembrane transporter activity	1.18E-02
82	GO:0005096: GTPase activator activity	1.25E-02
83	GO:0008047: enzyme activator activity	1.31E-02
84	GO:0004805: trehalose-phosphatase activity	1.31E-02
85	GO:0044183: protein binding involved in protein folding	1.46E-02
86	GO:0004161: dimethylallyltranstransferase activity	1.46E-02
87	GO:0047372: acylglycerol lipase activity	1.46E-02
88	GO:0015198: oligopeptide transporter activity	1.60E-02
89	GO:0008378: galactosyltransferase activity	1.60E-02
90	GO:0000049: tRNA binding	1.60E-02
91	GO:0015095: magnesium ion transmembrane transporter activity	1.75E-02
92	GO:0004565: beta-galactosidase activity	1.75E-02
93	GO:0008131: primary amine oxidase activity	1.91E-02
94	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.91E-02
95	GO:0008266: poly(U) RNA binding	1.91E-02
96	GO:0004190: aspartic-type endopeptidase activity	2.07E-02
97	GO:0015293: symporter activity	2.19E-02
98	GO:0051287: NAD binding	2.36E-02
99	GO:0051536: iron-sulfur cluster binding	2.41E-02
100	GO:0043424: protein histidine kinase binding	2.59E-02
101	GO:0015079: potassium ion transmembrane transporter activity	2.59E-02
102	GO:0008168: methyltransferase activity	2.60E-02
103	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.63E-02
104	GO:0004601: peroxidase activity	2.73E-02
105	GO:0019706: protein-cysteine S-palmitoyltransferase activity	2.77E-02
106	GO:0004707: MAP kinase activity	2.77E-02
107	GO:0004176: ATP-dependent peptidase activity	2.77E-02
108	GO:0033612: receptor serine/threonine kinase binding	2.77E-02
109	GO:0016788: hydrolase activity, acting on ester bonds	2.80E-02
110	GO:0005509: calcium ion binding	3.83E-02
111	GO:0003713: transcription coactivator activity	3.94E-02
112	GO:0008080: N-acetyltransferase activity	3.94E-02
113	GO:0005524: ATP binding	4.11E-02
114	GO:0050662: coenzyme binding	4.14E-02
115	GO:0010181: FMN binding	4.14E-02
116	GO:0048038: quinone binding	4.57E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0009507: chloroplast	8.78E-30
3	GO:0009570: chloroplast stroma	1.39E-27
4	GO:0009534: chloroplast thylakoid	3.31E-16
5	GO:0009941: chloroplast envelope	2.49E-15
6	GO:0009543: chloroplast thylakoid lumen	4.25E-12
7	GO:0009535: chloroplast thylakoid membrane	8.54E-11
8	GO:0009579: thylakoid	1.01E-10
9	GO:0031977: thylakoid lumen	2.59E-07
10	GO:0009533: chloroplast stromal thylakoid	1.41E-05
11	GO:0010007: magnesium chelatase complex	3.02E-05
12	GO:0009505: plant-type cell wall	1.20E-04
13	GO:0000312: plastid small ribosomal subunit	1.57E-04
14	GO:0009654: photosystem II oxygen evolving complex	2.87E-04
15	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	4.45E-04
16	GO:0000428: DNA-directed RNA polymerase complex	4.45E-04
17	GO:0009344: nitrite reductase complex [NAD(P)H]	4.45E-04
18	GO:0019898: extrinsic component of membrane	7.51E-04
19	GO:0046658: anchored component of plasma membrane	1.28E-03
20	GO:0033281: TAT protein transport complex	1.57E-03
21	GO:0030095: chloroplast photosystem II	1.83E-03
22	GO:0010287: plastoglobule	2.01E-03
23	GO:0015934: large ribosomal subunit	2.19E-03
24	GO:0005840: ribosome	2.24E-03
25	GO:0009531: secondary cell wall	2.27E-03
26	GO:0009536: plastid	3.26E-03
27	GO:0031225: anchored component of membrane	3.32E-03
28	GO:0005886: plasma membrane	7.58E-03
29	GO:0009295: nucleoid	8.07E-03
30	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.05E-02
31	GO:0055028: cortical microtubule	1.31E-02
32	GO:0000311: plastid large ribosomal subunit	1.60E-02
33	GO:0032040: small-subunit processome	1.60E-02
34	GO:0030659: cytoplasmic vesicle membrane	1.91E-02
35	GO:0022627: cytosolic small ribosomal subunit	2.25E-02
36	GO:0009532: plastid stroma	2.77E-02
37	GO:0009706: chloroplast inner membrane	3.74E-02
38	GO:0048046: apoplast	3.91E-02
39	GO:0016020: membrane	4.33E-02
40	GO:0009523: photosystem II	4.36E-02