co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G18990

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
2	GO:0018160: peptidyl-pyrromethane cofactor linkage	0.00E+00
3	GO:0002184: cytoplasmic translational termination	0.00E+00
4	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
5	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
6	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
7	GO:0042821: pyridoxal biosynthetic process	0.00E+00
8	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
9	GO:0097164: ammonium ion metabolic process	0.00E+00
10	GO:0006223: uracil salvage	0.00E+00
11	GO:0042820: vitamin B6 catabolic process	0.00E+00
12	GO:0032544: plastid translation	2.71E-10
13	GO:0015995: chlorophyll biosynthetic process	7.19E-10
14	GO:0006353: DNA-templated transcription, termination	2.62E-08
15	GO:0009658: chloroplast organization	1.52E-07
16	GO:0006782: protoporphyrinogen IX biosynthetic process	1.62E-07
17	GO:0006412: translation	9.45E-07
18	GO:1901259: chloroplast rRNA processing	1.32E-06
19	GO:0006783: heme biosynthetic process	6.71E-06
20	GO:0090391: granum assembly	7.70E-06
21	GO:0010027: thylakoid membrane organization	2.14E-05
22	GO:0042254: ribosome biogenesis	3.04E-05
23	GO:0016123: xanthophyll biosynthetic process	5.18E-05
24	GO:0006418: tRNA aminoacylation for protein translation	5.99E-05
25	GO:0006655: phosphatidylglycerol biosynthetic process	7.64E-05
26	GO:0016117: carotenoid biosynthetic process	1.17E-04
27	GO:0048564: photosystem I assembly	1.78E-04
28	GO:0042255: ribosome assembly	1.78E-04
29	GO:1904964: positive regulation of phytol biosynthetic process	2.11E-04
30	GO:0042371: vitamin K biosynthetic process	2.11E-04
31	GO:0043686: co-translational protein modification	2.11E-04
32	GO:0006436: tryptophanyl-tRNA aminoacylation	2.11E-04
33	GO:0034337: RNA folding	2.11E-04
34	GO:0006438: valyl-tRNA aminoacylation	2.11E-04
35	GO:0009443: pyridoxal 5'-phosphate salvage	2.11E-04
36	GO:1904966: positive regulation of vitamin E biosynthetic process	2.11E-04
37	GO:0032502: developmental process	2.16E-04
38	GO:0006779: porphyrin-containing compound biosynthetic process	3.21E-04
39	GO:0009735: response to cytokinin	3.85E-04
40	GO:0015979: photosynthesis	4.49E-04
41	GO:0006529: asparagine biosynthetic process	4.71E-04
42	GO:0008616: queuosine biosynthetic process	4.71E-04
43	GO:0006729: tetrahydrobiopterin biosynthetic process	4.71E-04
44	GO:0007000: nucleolus organization	4.71E-04
45	GO:0043039: tRNA aminoacylation	4.71E-04
46	GO:1902326: positive regulation of chlorophyll biosynthetic process	4.71E-04
47	GO:0019388: galactose catabolic process	4.71E-04
48	GO:0070981: L-asparagine biosynthetic process	4.71E-04
49	GO:0018026: peptidyl-lysine monomethylation	4.71E-04
50	GO:0016024: CDP-diacylglycerol biosynthetic process	4.99E-04
51	GO:0045037: protein import into chloroplast stroma	4.99E-04
52	GO:0006633: fatty acid biosynthetic process	5.86E-04
53	GO:0051211: anisotropic cell growth	7.67E-04
54	GO:0000280: nuclear division	7.67E-04
55	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	7.67E-04
56	GO:0051604: protein maturation	7.67E-04
57	GO:0051085: chaperone mediated protein folding requiring cofactor	1.09E-03
58	GO:0010239: chloroplast mRNA processing	1.09E-03
59	GO:0006241: CTP biosynthetic process	1.09E-03
60	GO:0006165: nucleoside diphosphate phosphorylation	1.09E-03
61	GO:0006228: UTP biosynthetic process	1.09E-03
62	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.09E-03
63	GO:0006424: glutamyl-tRNA aminoacylation	1.09E-03
64	GO:0046739: transport of virus in multicellular host	1.09E-03
65	GO:0009590: detection of gravity	1.09E-03
66	GO:0015976: carbon utilization	1.45E-03
67	GO:0009765: photosynthesis, light harvesting	1.45E-03
68	GO:0006183: GTP biosynthetic process	1.45E-03
69	GO:0030007: cellular potassium ion homeostasis	1.45E-03
70	GO:0044206: UMP salvage	1.45E-03
71	GO:0045038: protein import into chloroplast thylakoid membrane	1.85E-03
72	GO:0031365: N-terminal protein amino acid modification	1.85E-03
73	GO:0016120: carotene biosynthetic process	1.85E-03
74	GO:0043097: pyrimidine nucleoside salvage	1.85E-03
75	GO:0032543: mitochondrial translation	1.85E-03
76	GO:0010236: plastoquinone biosynthetic process	1.85E-03
77	GO:0042742: defense response to bacterium	1.88E-03
78	GO:0006206: pyrimidine nucleobase metabolic process	2.28E-03
79	GO:0042793: transcription from plastid promoter	2.28E-03
80	GO:0010190: cytochrome b6f complex assembly	2.28E-03
81	GO:0009117: nucleotide metabolic process	2.28E-03
82	GO:0010019: chloroplast-nucleus signaling pathway	2.74E-03
83	GO:0010555: response to mannitol	2.74E-03
84	GO:0009955: adaxial/abaxial pattern specification	2.74E-03
85	GO:0042026: protein refolding	2.74E-03
86	GO:0042372: phylloquinone biosynthetic process	2.74E-03
87	GO:0017148: negative regulation of translation	2.74E-03
88	GO:0009790: embryo development	3.13E-03
89	GO:0009772: photosynthetic electron transport in photosystem II	3.23E-03
90	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	3.23E-03
91	GO:0010196: nonphotochemical quenching	3.23E-03
92	GO:0052543: callose deposition in cell wall	3.74E-03
93	GO:0005978: glycogen biosynthetic process	3.74E-03
94	GO:0009642: response to light intensity	3.74E-03
95	GO:0006875: cellular metal ion homeostasis	3.74E-03
96	GO:0009817: defense response to fungus, incompatible interaction	3.94E-03
97	GO:0017004: cytochrome complex assembly	4.29E-03
98	GO:0010497: plasmodesmata-mediated intercellular transport	4.29E-03
99	GO:0006754: ATP biosynthetic process	4.85E-03
100	GO:0048589: developmental growth	4.85E-03
101	GO:0034765: regulation of ion transmembrane transport	4.85E-03
102	GO:0045036: protein targeting to chloroplast	6.06E-03
103	GO:0018119: peptidyl-cysteine S-nitrosylation	6.69E-03
104	GO:0006415: translational termination	6.69E-03
105	GO:0006006: glucose metabolic process	8.04E-03
106	GO:0006541: glutamine metabolic process	8.75E-03
107	GO:0010207: photosystem II assembly	8.75E-03
108	GO:0010167: response to nitrate	9.48E-03
109	GO:0009793: embryo development ending in seed dormancy	9.75E-03
110	GO:0019344: cysteine biosynthetic process	1.10E-02
111	GO:0009116: nucleoside metabolic process	1.10E-02
112	GO:0007010: cytoskeleton organization	1.10E-02
113	GO:0045454: cell redox homeostasis	1.12E-02
114	GO:0006457: protein folding	1.15E-02
115	GO:0043622: cortical microtubule organization	1.18E-02
116	GO:0016998: cell wall macromolecule catabolic process	1.26E-02
117	GO:0051260: protein homooligomerization	1.26E-02
118	GO:0007005: mitochondrion organization	1.34E-02
119	GO:0009411: response to UV	1.43E-02
120	GO:0008152: metabolic process	1.65E-02
121	GO:0008033: tRNA processing	1.70E-02
122	GO:0000413: protein peptidyl-prolyl isomerization	1.70E-02
123	GO:0009741: response to brassinosteroid	1.79E-02
124	GO:0009646: response to absence of light	1.88E-02
125	GO:0019252: starch biosynthetic process	1.98E-02
126	GO:0008654: phospholipid biosynthetic process	1.98E-02
127	GO:0071805: potassium ion transmembrane transport	2.49E-02
128	GO:0008380: RNA splicing	2.56E-02
129	GO:0000910: cytokinesis	2.59E-02
130	GO:0010029: regulation of seed germination	2.81E-02
131	GO:0009627: systemic acquired resistance	2.92E-02
132	GO:0042128: nitrate assimilation	2.92E-02
133	GO:0010411: xyloglucan metabolic process	3.04E-02
134	GO:0018298: protein-chromophore linkage	3.27E-02
135	GO:0008219: cell death	3.27E-02
136	GO:0048481: plant ovule development	3.27E-02
137	GO:0048767: root hair elongation	3.38E-02
138	GO:0010119: regulation of stomatal movement	3.62E-02
139	GO:0080167: response to karrikin	4.11E-02
140	GO:0030001: metal ion transport	4.24E-02
141	GO:0006631: fatty acid metabolic process	4.37E-02
142	GO:0042542: response to hydrogen peroxide	4.50E-02
143	GO:0042546: cell wall biogenesis	4.76E-02

Rank	GO Term	Adjusted P value
1	GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity	0.00E+00
2	GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity	0.00E+00
3	GO:0005048: signal sequence binding	0.00E+00
4	GO:0047889: ferredoxin-nitrate reductase activity	0.00E+00
5	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
6	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
7	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
8	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
9	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
10	GO:0016631: enoyl-[acyl-carrier-protein] reductase activity	0.00E+00
11	GO:0015269: calcium-activated potassium channel activity	0.00E+00
12	GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding	0.00E+00
13	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
14	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
15	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
16	GO:0004853: uroporphyrinogen decarboxylase activity	0.00E+00
17	GO:0048307: ferredoxin-nitrite reductase activity	0.00E+00
18	GO:0050421: nitrite reductase (NO-forming) activity	0.00E+00
19	GO:0004418: hydroxymethylbilane synthase activity	0.00E+00
20	GO:0019843: rRNA binding	8.16E-12
21	GO:0003735: structural constituent of ribosome	1.24E-06
22	GO:0043023: ribosomal large subunit binding	1.76E-05
23	GO:0016851: magnesium chelatase activity	1.76E-05
24	GO:0051920: peroxiredoxin activity	1.06E-04
25	GO:0004812: aminoacyl-tRNA ligase activity	1.17E-04
26	GO:0016209: antioxidant activity	1.78E-04
27	GO:0004832: valine-tRNA ligase activity	2.11E-04
28	GO:0004830: tryptophan-tRNA ligase activity	2.11E-04
29	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	2.11E-04
30	GO:0004560: alpha-L-fucosidase activity	2.11E-04
31	GO:0004831: tyrosine-tRNA ligase activity	2.11E-04
32	GO:0004071: aspartate-ammonia ligase activity	2.11E-04
33	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	2.11E-04
34	GO:0042586: peptide deformylase activity	2.11E-04
35	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	2.11E-04
36	GO:0009374: biotin binding	2.11E-04
37	GO:0015088: copper uptake transmembrane transporter activity	2.11E-04
38	GO:0008479: queuine tRNA-ribosyltransferase activity	4.71E-04
39	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	4.71E-04
40	GO:0004614: phosphoglucomutase activity	4.71E-04
41	GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity	4.71E-04
42	GO:0070402: NADPH binding	7.67E-04
43	GO:0004751: ribose-5-phosphate isomerase activity	7.67E-04
44	GO:0004550: nucleoside diphosphate kinase activity	1.09E-03
45	GO:0004300: enoyl-CoA hydratase activity	1.09E-03
46	GO:0008097: 5S rRNA binding	1.09E-03
47	GO:0001872: (1->3)-beta-D-glucan binding	1.09E-03
48	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.09E-03
49	GO:0035529: NADH pyrophosphatase activity	1.09E-03
50	GO:0048487: beta-tubulin binding	1.09E-03
51	GO:0016149: translation release factor activity, codon specific	1.09E-03
52	GO:0003727: single-stranded RNA binding	1.36E-03
53	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.45E-03
54	GO:0004659: prenyltransferase activity	1.45E-03
55	GO:0016279: protein-lysine N-methyltransferase activity	1.45E-03
56	GO:0004845: uracil phosphoribosyltransferase activity	1.45E-03
57	GO:0043495: protein anchor	1.45E-03
58	GO:0003989: acetyl-CoA carboxylase activity	1.85E-03
59	GO:0004040: amidase activity	1.85E-03
60	GO:0030414: peptidase inhibitor activity	1.85E-03
61	GO:0015271: outward rectifier potassium channel activity	2.28E-03
62	GO:0004605: phosphatidate cytidylyltransferase activity	2.28E-03
63	GO:0016462: pyrophosphatase activity	2.28E-03
64	GO:0008237: metallopeptidase activity	2.70E-03
65	GO:0004849: uridine kinase activity	2.74E-03
66	GO:0019899: enzyme binding	3.23E-03
67	GO:0008312: 7S RNA binding	3.74E-03
68	GO:0004033: aldo-keto reductase (NADP) activity	3.74E-03
69	GO:0005267: potassium channel activity	4.29E-03
70	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	4.85E-03
71	GO:0003747: translation release factor activity	4.85E-03
72	GO:0005381: iron ion transmembrane transporter activity	5.44E-03
73	GO:0016887: ATPase activity	6.35E-03
74	GO:0044183: protein binding involved in protein folding	6.69E-03
75	GO:0003723: RNA binding	7.43E-03
76	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	7.50E-03
77	GO:0004089: carbonate dehydratase activity	8.04E-03
78	GO:0031072: heat shock protein binding	8.04E-03
79	GO:0003690: double-stranded DNA binding	8.97E-03
80	GO:0052689: carboxylic ester hydrolase activity	1.01E-02
81	GO:0042803: protein homodimerization activity	1.18E-02
82	GO:0005216: ion channel activity	1.18E-02
83	GO:0051082: unfolded protein binding	1.24E-02
84	GO:0004176: ATP-dependent peptidase activity	1.26E-02
85	GO:0005507: copper ion binding	1.33E-02
86	GO:0022891: substrate-specific transmembrane transporter activity	1.43E-02
87	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.59E-02
88	GO:0003713: transcription coactivator activity	1.79E-02
89	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.08E-02
90	GO:0008483: transaminase activity	2.49E-02
91	GO:0005200: structural constituent of cytoskeleton	2.49E-02
92	GO:0042802: identical protein binding	2.73E-02
93	GO:0016168: chlorophyll binding	2.81E-02
94	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.04E-02
95	GO:0030247: polysaccharide binding	3.04E-02
96	GO:0008236: serine-type peptidase activity	3.15E-02
97	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.27E-02
98	GO:0004601: peroxidase activity	3.32E-02
99	GO:0016491: oxidoreductase activity	3.38E-02
100	GO:0004222: metalloendopeptidase activity	3.50E-02
101	GO:0016740: transferase activity	3.83E-02
102	GO:0003729: mRNA binding	4.03E-02
103	GO:0051539: 4 iron, 4 sulfur cluster binding	4.24E-02
104	GO:0043621: protein self-association	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0005835: fatty acid synthase complex	0.00E+00
2	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
3	GO:0009507: chloroplast	5.63E-66
4	GO:0009570: chloroplast stroma	1.69E-49
5	GO:0009941: chloroplast envelope	3.17E-37
6	GO:0009535: chloroplast thylakoid membrane	2.45E-21
7	GO:0009579: thylakoid	4.07E-21
8	GO:0009543: chloroplast thylakoid lumen	7.09E-09
9	GO:0009536: plastid	9.74E-09
10	GO:0031977: thylakoid lumen	1.71E-07
11	GO:0005840: ribosome	4.10E-07
12	GO:0009654: photosystem II oxygen evolving complex	1.64E-06
13	GO:0031969: chloroplast membrane	4.92E-06
14	GO:0009534: chloroplast thylakoid	1.48E-04
15	GO:0019898: extrinsic component of membrane	1.79E-04
16	GO:0009515: granal stacked thylakoid	2.11E-04
17	GO:0080085: signal recognition particle, chloroplast targeting	4.71E-04
18	GO:0000427: plastid-encoded plastid RNA polymerase complex	4.71E-04
19	GO:0009508: plastid chromosome	5.67E-04
20	GO:0010007: magnesium chelatase complex	7.67E-04
21	GO:0009317: acetyl-CoA carboxylase complex	7.67E-04
22	GO:0042651: thylakoid membrane	9.63E-04
23	GO:0009526: plastid envelope	1.45E-03
24	GO:0031897: Tic complex	1.45E-03
25	GO:0022626: cytosolic ribosome	1.79E-03
26	GO:0055035: plastid thylakoid membrane	1.85E-03
27	GO:0010319: stromule	2.70E-03
28	GO:0009295: nucleoid	2.70E-03
29	GO:0048046: apoplast	3.06E-03
30	GO:0009533: chloroplast stromal thylakoid	3.23E-03
31	GO:0009707: chloroplast outer membrane	3.94E-03
32	GO:0009539: photosystem II reaction center	4.29E-03
33	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	4.29E-03
34	GO:0005763: mitochondrial small ribosomal subunit	4.85E-03
35	GO:0000311: plastid large ribosomal subunit	7.36E-03
36	GO:0032040: small-subunit processome	7.36E-03
37	GO:0030095: chloroplast photosystem II	8.75E-03
38	GO:0009706: chloroplast inner membrane	1.24E-02
39	GO:0015935: small ribosomal subunit	1.26E-02
40	GO:0005623: cell	1.59E-02
41	GO:0009523: photosystem II	1.98E-02
42	GO:0046658: anchored component of plasma membrane	2.84E-02
43	GO:0015934: large ribosomal subunit	3.62E-02
44	GO:0022625: cytosolic large ribosomal subunit	4.32E-02