co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G18300

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0061635: regulation of protein complex stability	0.00E+00
2	GO:0042593: glucose homeostasis	0.00E+00
3	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
4	GO:0042549: photosystem II stabilization	3.71E-05
5	GO:0046620: regulation of organ growth	9.09E-05
6	GO:0071370: cellular response to gibberellin stimulus	1.35E-04
7	GO:0000481: maturation of 5S rRNA	1.35E-04
8	GO:0034337: RNA folding	1.35E-04
9	GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process	1.35E-04
10	GO:0006949: syncytium formation	2.00E-04
11	GO:0043085: positive regulation of catalytic activity	2.34E-04
12	GO:0009750: response to fructose	2.34E-04
13	GO:0034755: iron ion transmembrane transport	3.11E-04
14	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	3.11E-04
15	GO:0030388: fructose 1,6-bisphosphate metabolic process	3.11E-04
16	GO:0010207: photosystem II assembly	3.49E-04
17	GO:0009744: response to sucrose	3.93E-04
18	GO:0006000: fructose metabolic process	5.13E-04
19	GO:0006013: mannose metabolic process	5.13E-04
20	GO:0006696: ergosterol biosynthetic process	5.13E-04
21	GO:0006979: response to oxidative stress	5.50E-04
22	GO:0009735: response to cytokinin	5.52E-04
23	GO:0009733: response to auxin	6.83E-04
24	GO:0080170: hydrogen peroxide transmembrane transport	7.34E-04
25	GO:0009800: cinnamic acid biosynthetic process	7.34E-04
26	GO:2001141: regulation of RNA biosynthetic process	7.34E-04
27	GO:1902476: chloride transmembrane transport	7.34E-04
28	GO:0051513: regulation of monopolar cell growth	7.34E-04
29	GO:0042545: cell wall modification	8.60E-04
30	GO:0034220: ion transmembrane transport	8.75E-04
31	GO:0030104: water homeostasis	9.73E-04
32	GO:2000038: regulation of stomatal complex development	9.73E-04
33	GO:0006542: glutamine biosynthetic process	9.73E-04
34	GO:0019676: ammonia assimilation cycle	9.73E-04
35	GO:0015976: carbon utilization	9.73E-04
36	GO:0045727: positive regulation of translation	9.73E-04
37	GO:0015994: chlorophyll metabolic process	9.73E-04
38	GO:0032876: negative regulation of DNA endoreduplication	1.23E-03
39	GO:0030308: negative regulation of cell growth	1.23E-03
40	GO:0009828: plant-type cell wall loosening	1.38E-03
41	GO:0006559: L-phenylalanine catabolic process	1.51E-03
42	GO:0000741: karyogamy	1.51E-03
43	GO:1902456: regulation of stomatal opening	1.51E-03
44	GO:0045490: pectin catabolic process	1.76E-03
45	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.81E-03
46	GO:0010019: chloroplast-nucleus signaling pathway	1.81E-03
47	GO:2000037: regulation of stomatal complex patterning	1.81E-03
48	GO:0050829: defense response to Gram-negative bacterium	2.12E-03
49	GO:0006821: chloride transport	2.12E-03
50	GO:0009642: response to light intensity	2.46E-03
51	GO:0006402: mRNA catabolic process	2.46E-03
52	GO:0030091: protein repair	2.46E-03
53	GO:0032508: DNA duplex unwinding	2.46E-03
54	GO:0000028: ribosomal small subunit assembly	2.46E-03
55	GO:0010492: maintenance of shoot apical meristem identity	2.46E-03
56	GO:0007568: aging	2.46E-03
57	GO:0009657: plastid organization	2.81E-03
58	GO:0032544: plastid translation	2.81E-03
59	GO:0009699: phenylpropanoid biosynthetic process	2.81E-03
60	GO:0006002: fructose 6-phosphate metabolic process	2.81E-03
61	GO:0071482: cellular response to light stimulus	2.81E-03
62	GO:0048507: meristem development	3.17E-03
63	GO:0009051: pentose-phosphate shunt, oxidative branch	3.17E-03
64	GO:0010114: response to red light	3.47E-03
65	GO:0009926: auxin polar transport	3.47E-03
66	GO:0010205: photoinhibition	3.55E-03
67	GO:0080167: response to karrikin	4.01E-03
68	GO:0009664: plant-type cell wall organization	4.34E-03
69	GO:0019684: photosynthesis, light reaction	4.36E-03
70	GO:0009089: lysine biosynthetic process via diaminopimelate	4.36E-03
71	GO:0006879: cellular iron ion homeostasis	4.36E-03
72	GO:0006352: DNA-templated transcription, initiation	4.36E-03
73	GO:0009698: phenylpropanoid metabolic process	4.36E-03
74	GO:0005983: starch catabolic process	4.79E-03
75	GO:0015706: nitrate transport	4.79E-03
76	GO:0008361: regulation of cell size	4.79E-03
77	GO:0006006: glucose metabolic process	5.22E-03
78	GO:2000028: regulation of photoperiodism, flowering	5.22E-03
79	GO:0006094: gluconeogenesis	5.22E-03
80	GO:0005986: sucrose biosynthetic process	5.22E-03
81	GO:0010167: response to nitrate	6.14E-03
82	GO:0005985: sucrose metabolic process	6.14E-03
83	GO:0010030: positive regulation of seed germination	6.14E-03
84	GO:0006636: unsaturated fatty acid biosynthetic process	6.62E-03
85	GO:0006833: water transport	6.62E-03
86	GO:0005992: trehalose biosynthetic process	7.11E-03
87	GO:0031408: oxylipin biosynthetic process	8.14E-03
88	GO:0035428: hexose transmembrane transport	8.67E-03
89	GO:0006730: one-carbon metabolic process	8.67E-03
90	GO:0019748: secondary metabolic process	8.67E-03
91	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	9.21E-03
92	GO:0006284: base-excision repair	9.77E-03
93	GO:0009734: auxin-activated signaling pathway	1.02E-02
94	GO:0016117: carotenoid biosynthetic process	1.03E-02
95	GO:0080022: primary root development	1.09E-02
96	GO:0000413: protein peptidyl-prolyl isomerization	1.09E-02
97	GO:0010087: phloem or xylem histogenesis	1.09E-02
98	GO:0042631: cellular response to water deprivation	1.09E-02
99	GO:0006662: glycerol ether metabolic process	1.15E-02
100	GO:0010197: polar nucleus fusion	1.15E-02
101	GO:0046323: glucose import	1.15E-02
102	GO:0009749: response to glucose	1.27E-02
103	GO:0009739: response to gibberellin	1.28E-02
104	GO:0006412: translation	1.38E-02
105	GO:0009409: response to cold	1.39E-02
106	GO:0010090: trichome morphogenesis	1.46E-02
107	GO:0071805: potassium ion transmembrane transport	1.60E-02
108	GO:0009826: unidimensional cell growth	1.71E-02
109	GO:0042128: nitrate assimilation	1.88E-02
110	GO:0015995: chlorophyll biosynthetic process	1.95E-02
111	GO:0010411: xyloglucan metabolic process	1.95E-02
112	GO:0016311: dephosphorylation	2.02E-02
113	GO:0010119: regulation of stomatal movement	2.32E-02
114	GO:0015979: photosynthesis	2.52E-02
115	GO:0034599: cellular response to oxidative stress	2.56E-02
116	GO:0045892: negative regulation of transcription, DNA-templated	2.68E-02
117	GO:0042546: cell wall biogenesis	3.05E-02
118	GO:0042742: defense response to bacterium	3.31E-02
119	GO:0006855: drug transmembrane transport	3.31E-02
120	GO:0008152: metabolic process	3.59E-02
121	GO:0006364: rRNA processing	3.67E-02
122	GO:0006813: potassium ion transport	3.67E-02
123	GO:0006417: regulation of translation	3.95E-02
124	GO:0009626: plant-type hypersensitive response	4.32E-02
125	GO:0009740: gibberellic acid mediated signaling pathway	4.52E-02
126	GO:0006396: RNA processing	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0046905: phytoene synthase activity	0.00E+00
2	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
3	GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity	0.00E+00
4	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
5	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
6	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
7	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	9.18E-07
8	GO:0019843: rRNA binding	1.09E-05
9	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.89E-05
10	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	1.35E-04
11	GO:0009671: nitrate:proton symporter activity	1.35E-04
12	GO:0051996: squalene synthase activity	1.35E-04
13	GO:0046906: tetrapyrrole binding	1.35E-04
14	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	3.11E-04
15	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	3.11E-04
16	GO:0047746: chlorophyllase activity	3.11E-04
17	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	3.11E-04
18	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	3.11E-04
19	GO:0005528: FK506 binding	4.84E-04
20	GO:0045548: phenylalanine ammonia-lyase activity	5.13E-04
21	GO:0047274: galactinol-sucrose galactosyltransferase activity	5.13E-04
22	GO:0090729: toxin activity	5.13E-04
23	GO:0045330: aspartyl esterase activity	6.53E-04
24	GO:0030599: pectinesterase activity	8.29E-04
25	GO:0005253: anion channel activity	9.73E-04
26	GO:0001053: plastid sigma factor activity	9.73E-04
27	GO:0004345: glucose-6-phosphate dehydrogenase activity	9.73E-04
28	GO:0016987: sigma factor activity	9.73E-04
29	GO:0004356: glutamate-ammonia ligase activity	1.23E-03
30	GO:0008725: DNA-3-methyladenine glycosylase activity	1.23E-03
31	GO:0005247: voltage-gated chloride channel activity	1.51E-03
32	GO:0015250: water channel activity	1.64E-03
33	GO:0004602: glutathione peroxidase activity	1.81E-03
34	GO:0004559: alpha-mannosidase activity	1.81E-03
35	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.81E-03
36	GO:0003735: structural constituent of ribosome	2.11E-03
37	GO:0019899: enzyme binding	2.12E-03
38	GO:0004564: beta-fructofuranosidase activity	2.46E-03
39	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	2.81E-03
40	GO:0004185: serine-type carboxypeptidase activity	3.47E-03
41	GO:0005381: iron ion transmembrane transporter activity	3.55E-03
42	GO:0015112: nitrate transmembrane transporter activity	3.55E-03
43	GO:0004575: sucrose alpha-glucosidase activity	3.55E-03
44	GO:0004805: trehalose-phosphatase activity	3.95E-03
45	GO:0008047: enzyme activator activity	3.95E-03
46	GO:0004565: beta-galactosidase activity	5.22E-03
47	GO:0004089: carbonate dehydratase activity	5.22E-03
48	GO:0008266: poly(U) RNA binding	5.68E-03
49	GO:0008146: sulfotransferase activity	6.14E-03
50	GO:0015079: potassium ion transmembrane transporter activity	7.62E-03
51	GO:0003727: single-stranded RNA binding	9.77E-03
52	GO:0047134: protein-disulfide reductase activity	1.03E-02
53	GO:0046910: pectinesterase inhibitor activity	1.07E-02
54	GO:0005355: glucose transmembrane transporter activity	1.21E-02
55	GO:0050662: coenzyme binding	1.21E-02
56	GO:0004791: thioredoxin-disulfide reductase activity	1.21E-02
57	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.34E-02
58	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.46E-02
59	GO:0003729: mRNA binding	1.60E-02
60	GO:0016597: amino acid binding	1.66E-02
61	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.94E-02
62	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.95E-02
63	GO:0030246: carbohydrate binding	1.99E-02
64	GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding	2.02E-02
65	GO:0015238: drug transmembrane transporter activity	2.17E-02
66	GO:0000987: core promoter proximal region sequence-specific DNA binding	2.56E-02
67	GO:0003993: acid phosphatase activity	2.56E-02
68	GO:0050661: NADP binding	2.72E-02
69	GO:0051537: 2 iron, 2 sulfur cluster binding	3.14E-02
70	GO:0043621: protein self-association	3.14E-02
71	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.67E-02
72	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	4.23E-02
73	GO:0004650: polygalacturonase activity	4.42E-02
74	GO:0016874: ligase activity	4.52E-02
75	GO:0015035: protein disulfide oxidoreductase activity	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0009570: chloroplast stroma	1.17E-11
3	GO:0009507: chloroplast	1.64E-11
4	GO:0009941: chloroplast envelope	6.81E-08
5	GO:0009535: chloroplast thylakoid membrane	7.91E-08
6	GO:0000312: plastid small ribosomal subunit	1.47E-07
7	GO:0009534: chloroplast thylakoid	2.08E-07
8	GO:0009543: chloroplast thylakoid lumen	5.10E-07
9	GO:0009579: thylakoid	2.51E-06
10	GO:0031969: chloroplast membrane	9.39E-06
11	GO:0009505: plant-type cell wall	3.43E-05
12	GO:0009547: plastid ribosome	1.35E-04
13	GO:0043674: columella	1.35E-04
14	GO:0005618: cell wall	2.40E-04
15	GO:0031977: thylakoid lumen	3.53E-04
16	GO:0005775: vacuolar lumen	7.34E-04
17	GO:0042646: plastid nucleoid	7.34E-04
18	GO:0016020: membrane	1.02E-03
19	GO:0034707: chloride channel complex	1.51E-03
20	GO:0009705: plant-type vacuole membrane	1.76E-03
21	GO:0016363: nuclear matrix	1.81E-03
22	GO:0005774: vacuolar membrane	1.96E-03
23	GO:0042807: central vacuole	2.12E-03
24	GO:0022627: cytosolic small ribosomal subunit	2.51E-03
25	GO:0005763: mitochondrial small ribosomal subunit	3.17E-03
26	GO:0032040: small-subunit processome	4.79E-03
27	GO:0005773: vacuole	4.97E-03
28	GO:0048046: apoplast	6.89E-03
29	GO:0009654: photosystem II oxygen evolving complex	7.62E-03
30	GO:0010287: plastoglobule	7.85E-03
31	GO:0005576: extracellular region	1.16E-02
32	GO:0009523: photosystem II	1.27E-02
33	GO:0019898: extrinsic component of membrane	1.27E-02
34	GO:0071944: cell periphery	1.46E-02
35	GO:0009295: nucleoid	1.60E-02
36	GO:0010319: stromule	1.60E-02
37	GO:0030529: intracellular ribonucleoprotein complex	1.73E-02
38	GO:0000325: plant-type vacuole	2.32E-02
39	GO:0015934: large ribosomal subunit	2.32E-02
40	GO:0031902: late endosome membrane	2.80E-02
41	GO:0005887: integral component of plasma membrane	4.41E-02
42	GO:0009706: chloroplast inner membrane	4.71E-02