GO Enrichment Analysis of Co-expressed Genes with
AT2G17972
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0097164: ammonium ion metabolic process | 0.00E+00 |
| 2 | GO:0006223: uracil salvage | 0.00E+00 |
| 3 | GO:0018160: peptidyl-pyrromethane cofactor linkage | 0.00E+00 |
| 4 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 5 | GO:0015742: alpha-ketoglutarate transport | 0.00E+00 |
| 6 | GO:0042407: cristae formation | 0.00E+00 |
| 7 | GO:0015995: chlorophyll biosynthetic process | 1.13E-10 |
| 8 | GO:0032544: plastid translation | 1.99E-06 |
| 9 | GO:0090391: granum assembly | 4.02E-06 |
| 10 | GO:0006782: protoporphyrinogen IX biosynthetic process | 5.16E-06 |
| 11 | GO:0051085: chaperone mediated protein folding requiring cofactor | 9.39E-06 |
| 12 | GO:1901259: chloroplast rRNA processing | 6.00E-05 |
| 13 | GO:0009658: chloroplast organization | 8.35E-05 |
| 14 | GO:0009735: response to cytokinin | 1.25E-04 |
| 15 | GO:0009657: plastid organization | 1.30E-04 |
| 16 | GO:0006436: tryptophanyl-tRNA aminoacylation | 1.48E-04 |
| 17 | GO:0006783: heme biosynthetic process | 1.60E-04 |
| 18 | GO:0006779: porphyrin-containing compound biosynthetic process | 1.92E-04 |
| 19 | GO:0006423: cysteinyl-tRNA aminoacylation | 3.38E-04 |
| 20 | GO:0070981: L-asparagine biosynthetic process | 3.38E-04 |
| 21 | GO:0080183: response to photooxidative stress | 3.38E-04 |
| 22 | GO:0006529: asparagine biosynthetic process | 3.38E-04 |
| 23 | GO:0006729: tetrahydrobiopterin biosynthetic process | 3.38E-04 |
| 24 | GO:0006568: tryptophan metabolic process | 3.38E-04 |
| 25 | GO:0015714: phosphoenolpyruvate transport | 5.54E-04 |
| 26 | GO:0051604: protein maturation | 5.54E-04 |
| 27 | GO:0071492: cellular response to UV-A | 5.54E-04 |
| 28 | GO:0006760: folic acid-containing compound metabolic process | 5.54E-04 |
| 29 | GO:0006165: nucleoside diphosphate phosphorylation | 7.93E-04 |
| 30 | GO:0006228: UTP biosynthetic process | 7.93E-04 |
| 31 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 7.93E-04 |
| 32 | GO:0006986: response to unfolded protein | 7.93E-04 |
| 33 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 7.93E-04 |
| 34 | GO:0015729: oxaloacetate transport | 7.93E-04 |
| 35 | GO:0006241: CTP biosynthetic process | 7.93E-04 |
| 36 | GO:0015979: photosynthesis | 1.03E-03 |
| 37 | GO:0030007: cellular potassium ion homeostasis | 1.05E-03 |
| 38 | GO:0015713: phosphoglycerate transport | 1.05E-03 |
| 39 | GO:0044206: UMP salvage | 1.05E-03 |
| 40 | GO:0046656: folic acid biosynthetic process | 1.05E-03 |
| 41 | GO:0006021: inositol biosynthetic process | 1.05E-03 |
| 42 | GO:0006662: glycerol ether metabolic process | 1.05E-03 |
| 43 | GO:0019676: ammonia assimilation cycle | 1.05E-03 |
| 44 | GO:0015743: malate transport | 1.05E-03 |
| 45 | GO:0071486: cellular response to high light intensity | 1.05E-03 |
| 46 | GO:0006183: GTP biosynthetic process | 1.05E-03 |
| 47 | GO:0006457: protein folding | 1.25E-03 |
| 48 | GO:0071423: malate transmembrane transport | 1.33E-03 |
| 49 | GO:0043097: pyrimidine nucleoside salvage | 1.33E-03 |
| 50 | GO:0032502: developmental process | 1.37E-03 |
| 51 | GO:0006206: pyrimidine nucleobase metabolic process | 1.63E-03 |
| 52 | GO:0046855: inositol phosphate dephosphorylation | 1.63E-03 |
| 53 | GO:0006796: phosphate-containing compound metabolic process | 1.63E-03 |
| 54 | GO:0010190: cytochrome b6f complex assembly | 1.63E-03 |
| 55 | GO:0006086: acetyl-CoA biosynthetic process from pyruvate | 1.63E-03 |
| 56 | GO:0006555: methionine metabolic process | 1.63E-03 |
| 57 | GO:0006633: fatty acid biosynthetic process | 1.82E-03 |
| 58 | GO:0010027: thylakoid membrane organization | 1.85E-03 |
| 59 | GO:0017148: negative regulation of translation | 1.96E-03 |
| 60 | GO:0046654: tetrahydrofolate biosynthetic process | 1.96E-03 |
| 61 | GO:0009955: adaxial/abaxial pattern specification | 1.96E-03 |
| 62 | GO:0042026: protein refolding | 1.96E-03 |
| 63 | GO:0009627: systemic acquired resistance | 2.06E-03 |
| 64 | GO:0006826: iron ion transport | 2.30E-03 |
| 65 | GO:0010196: nonphotochemical quenching | 2.30E-03 |
| 66 | GO:0042255: ribosome assembly | 2.66E-03 |
| 67 | GO:0006353: DNA-templated transcription, termination | 2.66E-03 |
| 68 | GO:0006875: cellular metal ion homeostasis | 2.66E-03 |
| 69 | GO:0048564: photosystem I assembly | 2.66E-03 |
| 70 | GO:0042742: defense response to bacterium | 2.74E-03 |
| 71 | GO:0034599: cellular response to oxidative stress | 3.17E-03 |
| 72 | GO:0034765: regulation of ion transmembrane transport | 3.44E-03 |
| 73 | GO:0009245: lipid A biosynthetic process | 3.44E-03 |
| 74 | GO:0031425: chloroplast RNA processing | 3.86E-03 |
| 75 | GO:0043067: regulation of programmed cell death | 3.86E-03 |
| 76 | GO:0035999: tetrahydrofolate interconversion | 3.86E-03 |
| 77 | GO:0019538: protein metabolic process | 4.29E-03 |
| 78 | GO:0045036: protein targeting to chloroplast | 4.29E-03 |
| 79 | GO:0080167: response to karrikin | 4.68E-03 |
| 80 | GO:0043085: positive regulation of catalytic activity | 4.73E-03 |
| 81 | GO:0042538: hyperosmotic salinity response | 4.89E-03 |
| 82 | GO:0045037: protein import into chloroplast stroma | 5.20E-03 |
| 83 | GO:0006790: sulfur compound metabolic process | 5.20E-03 |
| 84 | GO:0045454: cell redox homeostasis | 5.88E-03 |
| 85 | GO:0010020: chloroplast fission | 6.17E-03 |
| 86 | GO:0019253: reductive pentose-phosphate cycle | 6.17E-03 |
| 87 | GO:0006541: glutamine metabolic process | 6.17E-03 |
| 88 | GO:0006412: translation | 6.21E-03 |
| 89 | GO:0019853: L-ascorbic acid biosynthetic process | 6.67E-03 |
| 90 | GO:0010039: response to iron ion | 6.67E-03 |
| 91 | GO:0046854: phosphatidylinositol phosphorylation | 6.67E-03 |
| 92 | GO:0009116: nucleoside metabolic process | 7.74E-03 |
| 93 | GO:0007017: microtubule-based process | 8.29E-03 |
| 94 | GO:0006418: tRNA aminoacylation for protein translation | 8.29E-03 |
| 95 | GO:0051260: protein homooligomerization | 8.85E-03 |
| 96 | GO:0061077: chaperone-mediated protein folding | 8.85E-03 |
| 97 | GO:0006730: one-carbon metabolic process | 9.43E-03 |
| 98 | GO:0007005: mitochondrion organization | 9.43E-03 |
| 99 | GO:0009411: response to UV | 1.00E-02 |
| 100 | GO:0009790: embryo development | 1.09E-02 |
| 101 | GO:0042335: cuticle development | 1.19E-02 |
| 102 | GO:0006413: translational initiation | 1.21E-02 |
| 103 | GO:0010197: polar nucleus fusion | 1.25E-02 |
| 104 | GO:0009741: response to brassinosteroid | 1.25E-02 |
| 105 | GO:0006814: sodium ion transport | 1.32E-02 |
| 106 | GO:0009646: response to absence of light | 1.32E-02 |
| 107 | GO:0010583: response to cyclopentenone | 1.52E-02 |
| 108 | GO:0008380: RNA splicing | 1.55E-02 |
| 109 | GO:1901657: glycosyl compound metabolic process | 1.59E-02 |
| 110 | GO:0010286: heat acclimation | 1.74E-02 |
| 111 | GO:0071805: potassium ion transmembrane transport | 1.74E-02 |
| 112 | GO:0010029: regulation of seed germination | 1.97E-02 |
| 113 | GO:0048481: plant ovule development | 2.28E-02 |
| 114 | GO:0008219: cell death | 2.28E-02 |
| 115 | GO:0006499: N-terminal protein myristoylation | 2.45E-02 |
| 116 | GO:0010119: regulation of stomatal movement | 2.53E-02 |
| 117 | GO:0006839: mitochondrial transport | 2.96E-02 |
| 118 | GO:0042542: response to hydrogen peroxide | 3.14E-02 |
| 119 | GO:0008643: carbohydrate transport | 3.42E-02 |
| 120 | GO:0009644: response to high light intensity | 3.42E-02 |
| 121 | GO:0006812: cation transport | 3.80E-02 |
| 122 | GO:0006397: mRNA processing | 3.83E-02 |
| 123 | GO:0009585: red, far-red light phototransduction | 4.00E-02 |
| 124 | GO:0006096: glycolytic process | 4.50E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004418: hydroxymethylbilane synthase activity | 0.00E+00 |
| 2 | GO:0015038: glutathione disulfide oxidoreductase activity | 0.00E+00 |
| 3 | GO:0046408: chlorophyll synthetase activity | 0.00E+00 |
| 4 | GO:0015139: alpha-ketoglutarate transmembrane transporter activity | 0.00E+00 |
| 5 | GO:0015269: calcium-activated potassium channel activity | 0.00E+00 |
| 6 | GO:0016851: magnesium chelatase activity | 9.39E-06 |
| 7 | GO:0051087: chaperone binding | 2.74E-05 |
| 8 | GO:0004071: aspartate-ammonia ligase activity | 1.48E-04 |
| 9 | GO:0004853: uroporphyrinogen decarboxylase activity | 1.48E-04 |
| 10 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 1.48E-04 |
| 11 | GO:0009374: biotin binding | 1.48E-04 |
| 12 | GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity | 1.48E-04 |
| 13 | GO:0015088: copper uptake transmembrane transporter activity | 1.48E-04 |
| 14 | GO:0004830: tryptophan-tRNA ligase activity | 1.48E-04 |
| 15 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 1.48E-04 |
| 16 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 1.48E-04 |
| 17 | GO:0030794: (S)-coclaurine-N-methyltransferase activity | 1.48E-04 |
| 18 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 1.48E-04 |
| 19 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 1.48E-04 |
| 20 | GO:0015121: phosphoenolpyruvate:phosphate antiporter activity | 1.48E-04 |
| 21 | GO:0042803: protein homodimerization activity | 2.07E-04 |
| 22 | GO:0052833: inositol monophosphate 4-phosphatase activity | 3.38E-04 |
| 23 | GO:0015367: oxoglutarate:malate antiporter activity | 3.38E-04 |
| 24 | GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity | 3.38E-04 |
| 25 | GO:0016630: protochlorophyllide reductase activity | 3.38E-04 |
| 26 | GO:0004150: dihydroneopterin aldolase activity | 3.38E-04 |
| 27 | GO:0102083: 7,8-dihydromonapterin aldolase activity | 3.38E-04 |
| 28 | GO:0052832: inositol monophosphate 3-phosphatase activity | 3.38E-04 |
| 29 | GO:0004312: fatty acid synthase activity | 3.38E-04 |
| 30 | GO:0004817: cysteine-tRNA ligase activity | 3.38E-04 |
| 31 | GO:0000774: adenyl-nucleotide exchange factor activity | 3.38E-04 |
| 32 | GO:0008934: inositol monophosphate 1-phosphatase activity | 3.38E-04 |
| 33 | GO:0004751: ribose-5-phosphate isomerase activity | 5.54E-04 |
| 34 | GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity | 5.54E-04 |
| 35 | GO:0015131: oxaloacetate transmembrane transporter activity | 7.93E-04 |
| 36 | GO:0004550: nucleoside diphosphate kinase activity | 7.93E-04 |
| 37 | GO:0043023: ribosomal large subunit binding | 7.93E-04 |
| 38 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 7.93E-04 |
| 39 | GO:0047134: protein-disulfide reductase activity | 9.10E-04 |
| 40 | GO:0051082: unfolded protein binding | 1.03E-03 |
| 41 | GO:0015120: phosphoglycerate transmembrane transporter activity | 1.05E-03 |
| 42 | GO:0004845: uracil phosphoribosyltransferase activity | 1.05E-03 |
| 43 | GO:0004045: aminoacyl-tRNA hydrolase activity | 1.05E-03 |
| 44 | GO:0015035: protein disulfide oxidoreductase activity | 1.07E-03 |
| 45 | GO:0004791: thioredoxin-disulfide reductase activity | 1.13E-03 |
| 46 | GO:0004040: amidase activity | 1.33E-03 |
| 47 | GO:0003959: NADPH dehydrogenase activity | 1.33E-03 |
| 48 | GO:0030414: peptidase inhibitor activity | 1.33E-03 |
| 49 | GO:0003989: acetyl-CoA carboxylase activity | 1.33E-03 |
| 50 | GO:0019843: rRNA binding | 1.36E-03 |
| 51 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.46E-03 |
| 52 | GO:0031177: phosphopantetheine binding | 1.63E-03 |
| 53 | GO:0016462: pyrophosphatase activity | 1.63E-03 |
| 54 | GO:0015271: outward rectifier potassium channel activity | 1.63E-03 |
| 55 | GO:0004849: uridine kinase activity | 1.96E-03 |
| 56 | GO:0000035: acyl binding | 1.96E-03 |
| 57 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 1.96E-03 |
| 58 | GO:0004427: inorganic diphosphatase activity | 2.30E-03 |
| 59 | GO:0015140: malate transmembrane transporter activity | 2.30E-03 |
| 60 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 2.66E-03 |
| 61 | GO:0005267: potassium channel activity | 3.04E-03 |
| 62 | GO:0005381: iron ion transmembrane transporter activity | 3.86E-03 |
| 63 | GO:0008047: enzyme activator activity | 4.29E-03 |
| 64 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 4.55E-03 |
| 65 | GO:0044183: protein binding involved in protein folding | 4.73E-03 |
| 66 | GO:0005507: copper ion binding | 6.20E-03 |
| 67 | GO:0051119: sugar transmembrane transporter activity | 6.67E-03 |
| 68 | GO:0004650: polygalacturonase activity | 6.82E-03 |
| 69 | GO:0005528: FK506 binding | 7.74E-03 |
| 70 | GO:0005216: ion channel activity | 8.29E-03 |
| 71 | GO:0043424: protein histidine kinase binding | 8.29E-03 |
| 72 | GO:0004176: ATP-dependent peptidase activity | 8.85E-03 |
| 73 | GO:0003735: structural constituent of ribosome | 9.12E-03 |
| 74 | GO:0022891: substrate-specific transmembrane transporter activity | 1.00E-02 |
| 75 | GO:0003727: single-stranded RNA binding | 1.06E-02 |
| 76 | GO:0004812: aminoacyl-tRNA ligase activity | 1.13E-02 |
| 77 | GO:0015297: antiporter activity | 1.23E-02 |
| 78 | GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity | 1.25E-02 |
| 79 | GO:0003743: translation initiation factor activity | 1.51E-02 |
| 80 | GO:0008237: metallopeptidase activity | 1.74E-02 |
| 81 | GO:0005200: structural constituent of cytoskeleton | 1.74E-02 |
| 82 | GO:0008483: transaminase activity | 1.74E-02 |
| 83 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 1.74E-02 |
| 84 | GO:0016168: chlorophyll binding | 1.97E-02 |
| 85 | GO:0102483: scopolin beta-glucosidase activity | 2.12E-02 |
| 86 | GO:0008236: serine-type peptidase activity | 2.20E-02 |
| 87 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.28E-02 |
| 88 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 2.45E-02 |
| 89 | GO:0003746: translation elongation factor activity | 2.70E-02 |
| 90 | GO:0008422: beta-glucosidase activity | 2.87E-02 |
| 91 | GO:0051537: 2 iron, 2 sulfur cluster binding | 3.42E-02 |
| 92 | GO:0003690: double-stranded DNA binding | 4.10E-02 |
| 93 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 4.61E-02 |
| 94 | GO:0022857: transmembrane transporter activity | 4.92E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 1.26E-45 |
| 2 | GO:0009570: chloroplast stroma | 5.98E-38 |
| 3 | GO:0009941: chloroplast envelope | 8.79E-23 |
| 4 | GO:0009579: thylakoid | 1.08E-14 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 1.04E-11 |
| 6 | GO:0009536: plastid | 7.32E-07 |
| 7 | GO:0009534: chloroplast thylakoid | 3.67E-05 |
| 8 | GO:0009295: nucleoid | 1.40E-04 |
| 9 | GO:0009515: granal stacked thylakoid | 1.48E-04 |
| 10 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 1.48E-04 |
| 11 | GO:0009508: plastid chromosome | 3.47E-04 |
| 12 | GO:0009317: acetyl-CoA carboxylase complex | 5.54E-04 |
| 13 | GO:0010007: magnesium chelatase complex | 5.54E-04 |
| 14 | GO:0005840: ribosome | 7.59E-04 |
| 15 | GO:0031969: chloroplast membrane | 8.47E-04 |
| 16 | GO:0009706: chloroplast inner membrane | 1.03E-03 |
| 17 | GO:0031897: Tic complex | 1.05E-03 |
| 18 | GO:0009526: plastid envelope | 1.05E-03 |
| 19 | GO:0055035: plastid thylakoid membrane | 1.33E-03 |
| 20 | GO:0005759: mitochondrial matrix | 1.82E-03 |
| 21 | GO:0030529: intracellular ribonucleoprotein complex | 1.85E-03 |
| 22 | GO:0048046: apoplast | 2.85E-03 |
| 23 | GO:0009539: photosystem II reaction center | 3.04E-03 |
| 24 | GO:0045298: tubulin complex | 3.44E-03 |
| 25 | GO:0005763: mitochondrial small ribosomal subunit | 3.44E-03 |
| 26 | GO:0000312: plastid small ribosomal subunit | 6.17E-03 |
| 27 | GO:0009654: photosystem II oxygen evolving complex | 8.29E-03 |
| 28 | GO:0009532: plastid stroma | 8.85E-03 |
| 29 | GO:0009543: chloroplast thylakoid lumen | 9.35E-03 |
| 30 | GO:0009523: photosystem II | 1.39E-02 |
| 31 | GO:0016592: mediator complex | 1.52E-02 |
| 32 | GO:0005778: peroxisomal membrane | 1.74E-02 |
| 33 | GO:0010319: stromule | 1.74E-02 |
| 34 | GO:0009707: chloroplast outer membrane | 2.28E-02 |
| 35 | GO:0015934: large ribosomal subunit | 2.53E-02 |
| 36 | GO:0005618: cell wall | 2.96E-02 |
| 37 | GO:0031977: thylakoid lumen | 3.05E-02 |