co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G13360

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015822: ornithine transport	0.00E+00
2	GO:0090706: specification of plant organ position	0.00E+00
3	GO:0007172: signal complex assembly	0.00E+00
4	GO:0080114: positive regulation of glycine hydroxymethyltransferase activity	0.00E+00
5	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
6	GO:0006000: fructose metabolic process	2.01E-06
7	GO:0006094: gluconeogenesis	4.38E-06
8	GO:0006002: fructose 6-phosphate metabolic process	7.24E-05
9	GO:0048507: meristem development	8.98E-05
10	GO:0043609: regulation of carbon utilization	1.00E-04
11	GO:0000066: mitochondrial ornithine transport	1.00E-04
12	GO:0010450: inflorescence meristem growth	1.00E-04
13	GO:0015969: guanosine tetraphosphate metabolic process	1.00E-04
14	GO:0051775: response to redox state	1.00E-04
15	GO:0010205: photoinhibition	1.09E-04
16	GO:0055114: oxidation-reduction process	1.45E-04
17	GO:0009773: photosynthetic electron transport in photosystem I	1.52E-04
18	GO:0010207: photosystem II assembly	2.31E-04
19	GO:0030388: fructose 1,6-bisphosphate metabolic process	2.36E-04
20	GO:0035304: regulation of protein dephosphorylation	2.36E-04
21	GO:0097054: L-glutamate biosynthetic process	2.36E-04
22	GO:0009416: response to light stimulus	3.07E-04
23	GO:0045165: cell fate commitment	3.92E-04
24	GO:0071230: cellular response to amino acid stimulus	3.92E-04
25	GO:0043617: cellular response to sucrose starvation	3.92E-04
26	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	5.64E-04
27	GO:0006107: oxaloacetate metabolic process	5.64E-04
28	GO:0006537: glutamate biosynthetic process	5.64E-04
29	GO:0010305: leaf vascular tissue pattern formation	6.40E-04
30	GO:0019676: ammonia assimilation cycle	7.50E-04
31	GO:0045727: positive regulation of translation	7.50E-04
32	GO:0006734: NADH metabolic process	7.50E-04
33	GO:1902183: regulation of shoot apical meristem development	9.47E-04
34	GO:0010158: abaxial cell fate specification	9.47E-04
35	GO:0016120: carotene biosynthetic process	9.47E-04
36	GO:0006656: phosphatidylcholine biosynthetic process	9.47E-04
37	GO:0043097: pyrimidine nucleoside salvage	9.47E-04
38	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.16E-03
39	GO:0042549: photosystem II stabilization	1.16E-03
40	GO:0000470: maturation of LSU-rRNA	1.16E-03
41	GO:0006206: pyrimidine nucleobase metabolic process	1.16E-03
42	GO:0000741: karyogamy	1.16E-03
43	GO:0009942: longitudinal axis specification	1.38E-03
44	GO:0009854: oxidative photosynthetic carbon pathway	1.38E-03
45	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	1.62E-03
46	GO:0009772: photosynthetic electron transport in photosystem II	1.62E-03
47	GO:1900056: negative regulation of leaf senescence	1.62E-03
48	GO:1900057: positive regulation of leaf senescence	1.62E-03
49	GO:0009853: photorespiration	1.81E-03
50	GO:0010492: maintenance of shoot apical meristem identity	1.87E-03
51	GO:0034968: histone lysine methylation	1.87E-03
52	GO:0048564: photosystem I assembly	1.87E-03
53	GO:0010093: specification of floral organ identity	2.14E-03
54	GO:0009932: cell tip growth	2.14E-03
55	GO:0071482: cellular response to light stimulus	2.14E-03
56	GO:0032544: plastid translation	2.14E-03
57	GO:0009744: response to sucrose	2.32E-03
58	GO:0006098: pentose-phosphate shunt	2.41E-03
59	GO:0010206: photosystem II repair	2.41E-03
60	GO:2000024: regulation of leaf development	2.41E-03
61	GO:0000373: Group II intron splicing	2.41E-03
62	GO:0010380: regulation of chlorophyll biosynthetic process	2.70E-03
63	GO:0016571: histone methylation	2.70E-03
64	GO:0009641: shade avoidance	3.00E-03
65	GO:0055062: phosphate ion homeostasis	3.00E-03
66	GO:0006364: rRNA processing	3.11E-03
67	GO:0046856: phosphatidylinositol dephosphorylation	3.31E-03
68	GO:0006816: calcium ion transport	3.31E-03
69	GO:0019684: photosynthesis, light reaction	3.31E-03
70	GO:0009750: response to fructose	3.31E-03
71	GO:0018119: peptidyl-cysteine S-nitrosylation	3.31E-03
72	GO:0005983: starch catabolic process	3.63E-03
73	GO:0006096: glycolytic process	3.68E-03
74	GO:0018107: peptidyl-threonine phosphorylation	3.95E-03
75	GO:0005986: sucrose biosynthetic process	3.95E-03
76	GO:0006108: malate metabolic process	3.95E-03
77	GO:0009934: regulation of meristem structural organization	4.30E-03
78	GO:0009933: meristem structural organization	4.30E-03
79	GO:0019253: reductive pentose-phosphate cycle	4.30E-03
80	GO:0010223: secondary shoot formation	4.30E-03
81	GO:0010053: root epidermal cell differentiation	4.64E-03
82	GO:0042343: indole glucosinolate metabolic process	4.64E-03
83	GO:2000377: regulation of reactive oxygen species metabolic process	5.37E-03
84	GO:0009944: polarity specification of adaxial/abaxial axis	5.37E-03
85	GO:0006289: nucleotide-excision repair	5.37E-03
86	GO:0006874: cellular calcium ion homeostasis	5.75E-03
87	GO:0098542: defense response to other organism	6.14E-03
88	GO:0061077: chaperone-mediated protein folding	6.14E-03
89	GO:0080092: regulation of pollen tube growth	6.54E-03
90	GO:0009686: gibberellin biosynthetic process	6.94E-03
91	GO:0009735: response to cytokinin	7.24E-03
92	GO:0016117: carotenoid biosynthetic process	7.78E-03
93	GO:0042631: cellular response to water deprivation	8.21E-03
94	GO:0010051: xylem and phloem pattern formation	8.21E-03
95	GO:0010268: brassinosteroid homeostasis	8.65E-03
96	GO:0071472: cellular response to salt stress	8.65E-03
97	GO:0010154: fruit development	8.65E-03
98	GO:0010197: polar nucleus fusion	8.65E-03
99	GO:0005975: carbohydrate metabolic process	8.90E-03
100	GO:0009646: response to absence of light	9.10E-03
101	GO:0045893: positive regulation of transcription, DNA-templated	9.68E-03
102	GO:0016132: brassinosteroid biosynthetic process	1.00E-02
103	GO:0009630: gravitropism	1.05E-02
104	GO:0016032: viral process	1.05E-02
105	GO:0030163: protein catabolic process	1.10E-02
106	GO:0016125: sterol metabolic process	1.15E-02
107	GO:0009658: chloroplast organization	1.18E-02
108	GO:0042254: ribosome biogenesis	1.20E-02
109	GO:0071805: potassium ion transmembrane transport	1.20E-02
110	GO:0016126: sterol biosynthetic process	1.30E-02
111	GO:0001666: response to hypoxia	1.30E-02
112	GO:0009737: response to abscisic acid	1.48E-02
113	GO:0016311: dephosphorylation	1.51E-02
114	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.52E-02
115	GO:0015979: photosynthesis	1.67E-02
116	GO:0006811: ion transport	1.68E-02
117	GO:0006499: N-terminal protein myristoylation	1.68E-02
118	GO:0009910: negative regulation of flower development	1.74E-02
119	GO:0045087: innate immune response	1.86E-02
120	GO:0006099: tricarboxylic acid cycle	1.91E-02
121	GO:0006839: mitochondrial transport	2.03E-02
122	GO:0006629: lipid metabolic process	2.17E-02
123	GO:0009585: red, far-red light phototransduction	2.75E-02
124	GO:0006813: potassium ion transport	2.75E-02
125	GO:0009909: regulation of flower development	2.95E-02
126	GO:0009734: auxin-activated signaling pathway	3.05E-02
127	GO:0006810: transport	3.21E-02
128	GO:0018105: peptidyl-serine phosphorylation	3.61E-02
129	GO:0009058: biosynthetic process	4.30E-02
130	GO:0042744: hydrogen peroxide catabolic process	4.54E-02
131	GO:0007275: multicellular organism development	4.59E-02
132	GO:0009790: embryo development	4.62E-02
133	GO:0006413: translational initiation	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0008465: glycerate dehydrogenase activity	0.00E+00
2	GO:0045436: lycopene beta cyclase activity	0.00E+00
3	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
4	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
5	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
6	GO:0052667: phosphomethylethanolamine N-methyltransferase activity	0.00E+00
7	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
8	GO:0008974: phosphoribulokinase activity	0.00E+00
9	GO:0008266: poly(U) RNA binding	5.46E-06
10	GO:0004332: fructose-bisphosphate aldolase activity	2.28E-05
11	GO:0008066: glutamate receptor activity	1.00E-04
12	GO:0010242: oxygen evolving activity	1.00E-04
13	GO:0051777: ent-kaurenoate oxidase activity	1.00E-04
14	GO:0004856: xylulokinase activity	1.00E-04
15	GO:0008746: NAD(P)+ transhydrogenase activity	1.00E-04
16	GO:0016041: glutamate synthase (ferredoxin) activity	1.00E-04
17	GO:0005094: Rho GDP-dissociation inhibitor activity	2.36E-04
18	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	2.36E-04
19	GO:0000064: L-ornithine transmembrane transporter activity	2.36E-04
20	GO:0008728: GTP diphosphokinase activity	2.36E-04
21	GO:0000234: phosphoethanolamine N-methyltransferase activity	2.36E-04
22	GO:0005528: FK506 binding	3.24E-04
23	GO:0010429: methyl-CpNpN binding	3.92E-04
24	GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity	3.92E-04
25	GO:0010428: methyl-CpNpG binding	3.92E-04
26	GO:0004148: dihydrolipoyl dehydrogenase activity	3.92E-04
27	GO:0019201: nucleotide kinase activity	5.64E-04
28	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	7.50E-04
29	GO:0004506: squalene monooxygenase activity	7.50E-04
30	GO:0070628: proteasome binding	7.50E-04
31	GO:0016773: phosphotransferase activity, alcohol group as acceptor	9.47E-04
32	GO:0051538: 3 iron, 4 sulfur cluster binding	9.47E-04
33	GO:2001070: starch binding	1.16E-03
34	GO:0000293: ferric-chelate reductase activity	1.16E-03
35	GO:0042578: phosphoric ester hydrolase activity	1.16E-03
36	GO:0031593: polyubiquitin binding	1.16E-03
37	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	1.16E-03
38	GO:0016615: malate dehydrogenase activity	1.16E-03
39	GO:0030060: L-malate dehydrogenase activity	1.38E-03
40	GO:0004017: adenylate kinase activity	1.38E-03
41	GO:0004849: uridine kinase activity	1.38E-03
42	GO:0042802: identical protein binding	1.43E-03
43	GO:0043022: ribosome binding	1.87E-03
44	GO:0071949: FAD binding	2.41E-03
45	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.70E-03
46	GO:0005515: protein binding	3.15E-03
47	GO:0005089: Rho guanyl-nucleotide exchange factor activity	3.31E-03
48	GO:0008327: methyl-CpG binding	3.31E-03
49	GO:0016301: kinase activity	3.56E-03
50	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	3.63E-03
51	GO:0005262: calcium channel activity	3.95E-03
52	GO:0004565: beta-galactosidase activity	3.95E-03
53	GO:0008081: phosphoric diester hydrolase activity	3.95E-03
54	GO:0005217: intracellular ligand-gated ion channel activity	4.64E-03
55	GO:0004970: ionotropic glutamate receptor activity	4.64E-03
56	GO:0043130: ubiquitin binding	5.37E-03
57	GO:0019843: rRNA binding	5.52E-03
58	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	5.67E-03
59	GO:0015079: potassium ion transmembrane transporter activity	5.75E-03
60	GO:0004176: ATP-dependent peptidase activity	6.14E-03
61	GO:0033612: receptor serine/threonine kinase binding	6.14E-03
62	GO:0016491: oxidoreductase activity	7.18E-03
63	GO:0018024: histone-lysine N-methyltransferase activity	7.78E-03
64	GO:0050662: coenzyme binding	9.10E-03
65	GO:0048038: quinone binding	1.00E-02
66	GO:0005524: ATP binding	1.10E-02
67	GO:0003684: damaged DNA binding	1.15E-02
68	GO:0008483: transaminase activity	1.20E-02
69	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	1.20E-02
70	GO:0008237: metallopeptidase activity	1.20E-02
71	GO:0019825: oxygen binding	1.27E-02
72	GO:0050660: flavin adenine dinucleotide binding	1.37E-02
73	GO:0004497: monooxygenase activity	1.47E-02
74	GO:0016787: hydrolase activity	1.50E-02
75	GO:0005096: GTPase activator activity	1.62E-02
76	GO:0004222: metalloendopeptidase activity	1.68E-02
77	GO:0050897: cobalt ion binding	1.74E-02
78	GO:0003746: translation elongation factor activity	1.86E-02
79	GO:0003993: acid phosphatase activity	1.91E-02
80	GO:0005506: iron ion binding	1.95E-02
81	GO:0042393: histone binding	2.03E-02
82	GO:0043621: protein self-association	2.35E-02
83	GO:0051287: NAD binding	2.55E-02
84	GO:0016298: lipase activity	2.81E-02
85	GO:0003777: microtubule motor activity	2.95E-02
86	GO:0008234: cysteine-type peptidase activity	2.95E-02
87	GO:0016874: ligase activity	3.38E-02
88	GO:0020037: heme binding	3.51E-02
89	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	5.04E-10
2	GO:0009535: chloroplast thylakoid membrane	7.80E-09
3	GO:0009579: thylakoid	5.23E-07
4	GO:0009534: chloroplast thylakoid	5.44E-07
5	GO:0009941: chloroplast envelope	2.18E-05
6	GO:0009543: chloroplast thylakoid lumen	7.11E-05
7	GO:0009570: chloroplast stroma	7.53E-05
8	GO:0048046: apoplast	8.83E-04
9	GO:0005759: mitochondrial matrix	9.44E-04
10	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.41E-03
11	GO:0008180: COP9 signalosome	2.41E-03
12	GO:0016324: apical plasma membrane	3.00E-03
13	GO:0030095: chloroplast photosystem II	4.30E-03
14	GO:0010287: plastoglobule	5.23E-03
15	GO:0009654: photosystem II oxygen evolving complex	5.75E-03
16	GO:0042651: thylakoid membrane	5.75E-03
17	GO:0000775: chromosome, centromeric region	6.54E-03
18	GO:0019898: extrinsic component of membrane	9.56E-03
19	GO:0010319: stromule	1.20E-02
20	GO:0016021: integral component of membrane	1.26E-02
21	GO:0030529: intracellular ribonucleoprotein complex	1.30E-02
22	GO:0019005: SCF ubiquitin ligase complex	1.57E-02
23	GO:0000325: plant-type vacuole	1.74E-02
24	GO:0031977: thylakoid lumen	2.10E-02
25	GO:0000502: proteasome complex	2.75E-02
26	GO:0016020: membrane	2.86E-02
27	GO:0005747: mitochondrial respiratory chain complex I	3.17E-02