GO Enrichment Analysis of Co-expressed Genes with
AT2G04790
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 0.00E+00 |
| 2 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 3 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 4 | GO:0046471: phosphatidylglycerol metabolic process | 0.00E+00 |
| 5 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 6 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 7 | GO:0006412: translation | 9.38E-15 |
| 8 | GO:0015979: photosynthesis | 8.70E-14 |
| 9 | GO:0042254: ribosome biogenesis | 6.99E-11 |
| 10 | GO:0032544: plastid translation | 2.61E-07 |
| 11 | GO:0009773: photosynthetic electron transport in photosystem I | 1.34E-06 |
| 12 | GO:0010027: thylakoid membrane organization | 5.73E-06 |
| 13 | GO:0034755: iron ion transmembrane transport | 5.84E-06 |
| 14 | GO:0015995: chlorophyll biosynthetic process | 8.73E-06 |
| 15 | GO:0010207: photosystem II assembly | 9.92E-05 |
| 16 | GO:0006636: unsaturated fatty acid biosynthetic process | 1.39E-04 |
| 17 | GO:0018298: protein-chromophore linkage | 1.53E-04 |
| 18 | GO:0042549: photosystem II stabilization | 1.80E-04 |
| 19 | GO:0009409: response to cold | 1.93E-04 |
| 20 | GO:0010019: chloroplast-nucleus signaling pathway | 2.44E-04 |
| 21 | GO:0071588: hydrogen peroxide mediated signaling pathway | 3.60E-04 |
| 22 | GO:0010729: positive regulation of hydrogen peroxide biosynthetic process | 3.60E-04 |
| 23 | GO:0000476: maturation of 4.5S rRNA | 3.60E-04 |
| 24 | GO:0000967: rRNA 5'-end processing | 3.60E-04 |
| 25 | GO:0006824: cobalt ion transport | 3.60E-04 |
| 26 | GO:0043489: RNA stabilization | 3.60E-04 |
| 27 | GO:1904966: positive regulation of vitamin E biosynthetic process | 3.60E-04 |
| 28 | GO:0000481: maturation of 5S rRNA | 3.60E-04 |
| 29 | GO:1904964: positive regulation of phytol biosynthetic process | 3.60E-04 |
| 30 | GO:0042371: vitamin K biosynthetic process | 3.60E-04 |
| 31 | GO:1902458: positive regulation of stomatal opening | 3.60E-04 |
| 32 | GO:0034337: RNA folding | 3.60E-04 |
| 33 | GO:0009657: plastid organization | 4.86E-04 |
| 34 | GO:0009735: response to cytokinin | 5.06E-04 |
| 35 | GO:0055114: oxidation-reduction process | 5.60E-04 |
| 36 | GO:0010206: photosystem II repair | 5.82E-04 |
| 37 | GO:0034470: ncRNA processing | 7.83E-04 |
| 38 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 7.83E-04 |
| 39 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 7.83E-04 |
| 40 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 7.83E-04 |
| 41 | GO:0006810: transport | 7.91E-04 |
| 42 | GO:0019684: photosynthesis, light reaction | 9.22E-04 |
| 43 | GO:0043085: positive regulation of catalytic activity | 9.22E-04 |
| 44 | GO:0009658: chloroplast organization | 9.68E-04 |
| 45 | GO:0006006: glucose metabolic process | 1.19E-03 |
| 46 | GO:0009767: photosynthetic electron transport chain | 1.19E-03 |
| 47 | GO:0006000: fructose metabolic process | 1.27E-03 |
| 48 | GO:0006954: inflammatory response | 1.27E-03 |
| 49 | GO:0006518: peptide metabolic process | 1.27E-03 |
| 50 | GO:0005977: glycogen metabolic process | 1.27E-03 |
| 51 | GO:0006011: UDP-glucose metabolic process | 1.27E-03 |
| 52 | GO:0019253: reductive pentose-phosphate cycle | 1.34E-03 |
| 53 | GO:0034599: cellular response to oxidative stress | 1.74E-03 |
| 54 | GO:0016556: mRNA modification | 1.83E-03 |
| 55 | GO:2001141: regulation of RNA biosynthetic process | 1.83E-03 |
| 56 | GO:0051513: regulation of monopolar cell growth | 1.83E-03 |
| 57 | GO:0009768: photosynthesis, light harvesting in photosystem I | 2.05E-03 |
| 58 | GO:0061077: chaperone-mediated protein folding | 2.25E-03 |
| 59 | GO:0010114: response to red light | 2.27E-03 |
| 60 | GO:0019464: glycine decarboxylation via glycine cleavage system | 2.45E-03 |
| 61 | GO:0015994: chlorophyll metabolic process | 2.45E-03 |
| 62 | GO:2000122: negative regulation of stomatal complex development | 2.45E-03 |
| 63 | GO:0006546: glycine catabolic process | 2.45E-03 |
| 64 | GO:0010037: response to carbon dioxide | 2.45E-03 |
| 65 | GO:0015976: carbon utilization | 2.45E-03 |
| 66 | GO:0009306: protein secretion | 2.92E-03 |
| 67 | GO:0009247: glycolipid biosynthetic process | 3.14E-03 |
| 68 | GO:0032543: mitochondrial translation | 3.14E-03 |
| 69 | GO:0006564: L-serine biosynthetic process | 3.14E-03 |
| 70 | GO:0045038: protein import into chloroplast thylakoid membrane | 3.14E-03 |
| 71 | GO:0031365: N-terminal protein amino acid modification | 3.14E-03 |
| 72 | GO:0000413: protein peptidyl-prolyl isomerization | 3.42E-03 |
| 73 | GO:0016554: cytidine to uridine editing | 3.88E-03 |
| 74 | GO:0032973: amino acid export | 3.88E-03 |
| 75 | GO:0010942: positive regulation of cell death | 3.88E-03 |
| 76 | GO:0000302: response to reactive oxygen species | 4.55E-03 |
| 77 | GO:0042026: protein refolding | 4.67E-03 |
| 78 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 4.67E-03 |
| 79 | GO:0006458: 'de novo' protein folding | 4.67E-03 |
| 80 | GO:0009854: oxidative photosynthetic carbon pathway | 4.67E-03 |
| 81 | GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity | 4.67E-03 |
| 82 | GO:0043090: amino acid import | 5.52E-03 |
| 83 | GO:0050829: defense response to Gram-negative bacterium | 5.52E-03 |
| 84 | GO:0009645: response to low light intensity stimulus | 5.52E-03 |
| 85 | GO:0009610: response to symbiotic fungus | 5.52E-03 |
| 86 | GO:0048564: photosystem I assembly | 6.41E-03 |
| 87 | GO:0042255: ribosome assembly | 6.41E-03 |
| 88 | GO:0009850: auxin metabolic process | 6.41E-03 |
| 89 | GO:0006605: protein targeting | 6.41E-03 |
| 90 | GO:0019375: galactolipid biosynthetic process | 6.41E-03 |
| 91 | GO:0032508: DNA duplex unwinding | 6.41E-03 |
| 92 | GO:2000070: regulation of response to water deprivation | 6.41E-03 |
| 93 | GO:0052543: callose deposition in cell wall | 6.41E-03 |
| 94 | GO:0009793: embryo development ending in seed dormancy | 6.81E-03 |
| 95 | GO:0042128: nitrate assimilation | 7.35E-03 |
| 96 | GO:0006002: fructose 6-phosphate metabolic process | 7.36E-03 |
| 97 | GO:0071482: cellular response to light stimulus | 7.36E-03 |
| 98 | GO:0017004: cytochrome complex assembly | 7.36E-03 |
| 99 | GO:0045454: cell redox homeostasis | 7.82E-03 |
| 100 | GO:0042744: hydrogen peroxide catabolic process | 8.20E-03 |
| 101 | GO:0009051: pentose-phosphate shunt, oxidative branch | 8.35E-03 |
| 102 | GO:0009821: alkaloid biosynthetic process | 8.35E-03 |
| 103 | GO:0080144: amino acid homeostasis | 8.35E-03 |
| 104 | GO:0009790: embryo development | 8.46E-03 |
| 105 | GO:0010205: photoinhibition | 9.38E-03 |
| 106 | GO:1900865: chloroplast RNA modification | 9.38E-03 |
| 107 | GO:0009631: cold acclimation | 9.96E-03 |
| 108 | GO:0007623: circadian rhythm | 1.05E-02 |
| 109 | GO:0009870: defense response signaling pathway, resistance gene-dependent | 1.05E-02 |
| 110 | GO:0009637: response to blue light | 1.09E-02 |
| 111 | GO:0009698: phenylpropanoid metabolic process | 1.16E-02 |
| 112 | GO:0006415: translational termination | 1.16E-02 |
| 113 | GO:0009089: lysine biosynthetic process via diaminopimelate | 1.16E-02 |
| 114 | GO:0009073: aromatic amino acid family biosynthetic process | 1.16E-02 |
| 115 | GO:0006879: cellular iron ion homeostasis | 1.16E-02 |
| 116 | GO:0006352: DNA-templated transcription, initiation | 1.16E-02 |
| 117 | GO:0006457: protein folding | 1.20E-02 |
| 118 | GO:0005986: sucrose biosynthetic process | 1.40E-02 |
| 119 | GO:0010628: positive regulation of gene expression | 1.40E-02 |
| 120 | GO:0006094: gluconeogenesis | 1.40E-02 |
| 121 | GO:0009744: response to sucrose | 1.41E-02 |
| 122 | GO:0009644: response to high light intensity | 1.53E-02 |
| 123 | GO:0000027: ribosomal large subunit assembly | 1.92E-02 |
| 124 | GO:0005992: trehalose biosynthetic process | 1.92E-02 |
| 125 | GO:0031408: oxylipin biosynthetic process | 2.20E-02 |
| 126 | GO:0016226: iron-sulfur cluster assembly | 2.35E-02 |
| 127 | GO:0030433: ubiquitin-dependent ERAD pathway | 2.35E-02 |
| 128 | GO:0009416: response to light stimulus | 2.54E-02 |
| 129 | GO:0042545: cell wall modification | 2.64E-02 |
| 130 | GO:0006284: base-excision repair | 2.65E-02 |
| 131 | GO:0009561: megagametogenesis | 2.65E-02 |
| 132 | GO:0006396: RNA processing | 2.80E-02 |
| 133 | GO:0006662: glycerol ether metabolic process | 3.13E-02 |
| 134 | GO:0019252: starch biosynthetic process | 3.47E-02 |
| 135 | GO:0002229: defense response to oomycetes | 3.64E-02 |
| 136 | GO:0032502: developmental process | 3.81E-02 |
| 137 | GO:0008152: metabolic process | 4.38E-02 |
| 138 | GO:0045490: pectin catabolic process | 4.68E-02 |
| 139 | GO:0009451: RNA modification | 4.78E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity | 0.00E+00 |
| 2 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 3 | GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity | 0.00E+00 |
| 4 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 5 | GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity | 0.00E+00 |
| 6 | GO:0050278: sedoheptulose-bisphosphatase activity | 0.00E+00 |
| 7 | GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity | 0.00E+00 |
| 8 | GO:0015038: glutathione disulfide oxidoreductase activity | 0.00E+00 |
| 9 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 10 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 11 | GO:0019843: rRNA binding | 2.95E-22 |
| 12 | GO:0003735: structural constituent of ribosome | 8.39E-19 |
| 13 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 8.35E-09 |
| 14 | GO:0005528: FK506 binding | 1.67E-07 |
| 15 | GO:0051537: 2 iron, 2 sulfur cluster binding | 4.46E-05 |
| 16 | GO:0016851: magnesium chelatase activity | 4.51E-05 |
| 17 | GO:0016168: chlorophyll binding | 1.05E-04 |
| 18 | GO:0004130: cytochrome-c peroxidase activity | 1.80E-04 |
| 19 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 2.44E-04 |
| 20 | GO:0019899: enzyme binding | 3.16E-04 |
| 21 | GO:0046906: tetrapyrrole binding | 3.60E-04 |
| 22 | GO:0052638: indole-3-butyrate beta-glucosyltransferase activity | 3.60E-04 |
| 23 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 4.86E-04 |
| 24 | GO:0005381: iron ion transmembrane transporter activity | 6.87E-04 |
| 25 | GO:0005509: calcium ion binding | 7.67E-04 |
| 26 | GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity | 7.83E-04 |
| 27 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 7.83E-04 |
| 28 | GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity | 7.83E-04 |
| 29 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 7.83E-04 |
| 30 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 7.83E-04 |
| 31 | GO:0047746: chlorophyllase activity | 7.83E-04 |
| 32 | GO:0042389: omega-3 fatty acid desaturase activity | 7.83E-04 |
| 33 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 7.83E-04 |
| 34 | GO:0004617: phosphoglycerate dehydrogenase activity | 7.83E-04 |
| 35 | GO:0009055: electron carrier activity | 8.16E-04 |
| 36 | GO:0031072: heat shock protein binding | 1.19E-03 |
| 37 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 1.27E-03 |
| 38 | GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity | 1.27E-03 |
| 39 | GO:0008266: poly(U) RNA binding | 1.34E-03 |
| 40 | GO:0031409: pigment binding | 1.67E-03 |
| 41 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 1.83E-03 |
| 42 | GO:0035250: UDP-galactosyltransferase activity | 1.83E-03 |
| 43 | GO:0016149: translation release factor activity, codon specific | 1.83E-03 |
| 44 | GO:0008097: 5S rRNA binding | 1.83E-03 |
| 45 | GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity | 1.83E-03 |
| 46 | GO:0016987: sigma factor activity | 2.45E-03 |
| 47 | GO:0043495: protein anchor | 2.45E-03 |
| 48 | GO:0001053: plastid sigma factor activity | 2.45E-03 |
| 49 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 2.45E-03 |
| 50 | GO:0022891: substrate-specific transmembrane transporter activity | 2.69E-03 |
| 51 | GO:0003727: single-stranded RNA binding | 2.92E-03 |
| 52 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 3.14E-03 |
| 53 | GO:0008725: DNA-3-methyladenine glycosylase activity | 3.14E-03 |
| 54 | GO:0042578: phosphoric ester hydrolase activity | 3.88E-03 |
| 55 | GO:0016688: L-ascorbate peroxidase activity | 3.88E-03 |
| 56 | GO:0051920: peroxiredoxin activity | 4.67E-03 |
| 57 | GO:0051082: unfolded protein binding | 5.21E-03 |
| 58 | GO:0015035: protein disulfide oxidoreductase activity | 5.41E-03 |
| 59 | GO:0008235: metalloexopeptidase activity | 5.52E-03 |
| 60 | GO:0016597: amino acid binding | 6.21E-03 |
| 61 | GO:0004033: aldo-keto reductase (NADP) activity | 6.41E-03 |
| 62 | GO:0016209: antioxidant activity | 6.41E-03 |
| 63 | GO:0003747: translation release factor activity | 8.35E-03 |
| 64 | GO:0016844: strictosidine synthase activity | 9.38E-03 |
| 65 | GO:0004222: metalloendopeptidase activity | 9.49E-03 |
| 66 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 9.96E-03 |
| 67 | GO:0008047: enzyme activator activity | 1.05E-02 |
| 68 | GO:0004805: trehalose-phosphatase activity | 1.05E-02 |
| 69 | GO:0008794: arsenate reductase (glutaredoxin) activity | 1.16E-02 |
| 70 | GO:0004177: aminopeptidase activity | 1.16E-02 |
| 71 | GO:0044183: protein binding involved in protein folding | 1.16E-02 |
| 72 | GO:0050661: NADP binding | 1.25E-02 |
| 73 | GO:0004022: alcohol dehydrogenase (NAD) activity | 1.40E-02 |
| 74 | GO:0004089: carbonate dehydratase activity | 1.40E-02 |
| 75 | GO:0008146: sulfotransferase activity | 1.65E-02 |
| 76 | GO:0051287: NAD binding | 1.71E-02 |
| 77 | GO:0004601: peroxidase activity | 1.83E-02 |
| 78 | GO:0051536: iron-sulfur cluster binding | 1.92E-02 |
| 79 | GO:0003690: double-stranded DNA binding | 1.98E-02 |
| 80 | GO:0043424: protein histidine kinase binding | 2.06E-02 |
| 81 | GO:0045330: aspartyl esterase activity | 2.11E-02 |
| 82 | GO:0003723: RNA binding | 2.45E-02 |
| 83 | GO:0030599: pectinesterase activity | 2.56E-02 |
| 84 | GO:0003756: protein disulfide isomerase activity | 2.65E-02 |
| 85 | GO:0047134: protein-disulfide reductase activity | 2.81E-02 |
| 86 | GO:0008080: N-acetyltransferase activity | 3.13E-02 |
| 87 | GO:0004791: thioredoxin-disulfide reductase activity | 3.30E-02 |
| 88 | GO:0019901: protein kinase binding | 3.47E-02 |
| 89 | GO:0048038: quinone binding | 3.64E-02 |
| 90 | GO:0004252: serine-type endopeptidase activity | 3.77E-02 |
| 91 | GO:0000156: phosphorelay response regulator activity | 3.99E-02 |
| 92 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 3.99E-02 |
| 93 | GO:0016491: oxidoreductase activity | 4.06E-02 |
| 94 | GO:0004519: endonuclease activity | 4.31E-02 |
| 95 | GO:0046872: metal ion binding | 4.66E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009575: chromoplast stroma | 0.00E+00 |
| 2 | GO:0005943: phosphatidylinositol 3-kinase complex, class IA | 0.00E+00 |
| 3 | GO:0044391: ribosomal subunit | 0.00E+00 |
| 4 | GO:0009344: nitrite reductase complex [NAD(P)H] | 0.00E+00 |
| 5 | GO:0009507: chloroplast | 1.02E-86 |
| 6 | GO:0009535: chloroplast thylakoid membrane | 5.46E-43 |
| 7 | GO:0009941: chloroplast envelope | 1.25E-39 |
| 8 | GO:0009570: chloroplast stroma | 1.02E-38 |
| 9 | GO:0009543: chloroplast thylakoid lumen | 3.86E-29 |
| 10 | GO:0009534: chloroplast thylakoid | 8.26E-27 |
| 11 | GO:0009579: thylakoid | 8.83E-23 |
| 12 | GO:0005840: ribosome | 1.84E-17 |
| 13 | GO:0031977: thylakoid lumen | 1.50E-15 |
| 14 | GO:0009654: photosystem II oxygen evolving complex | 7.30E-13 |
| 15 | GO:0019898: extrinsic component of membrane | 2.32E-11 |
| 16 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 4.30E-09 |
| 17 | GO:0030095: chloroplast photosystem II | 6.31E-08 |
| 18 | GO:0000311: plastid large ribosomal subunit | 1.86E-06 |
| 19 | GO:0031969: chloroplast membrane | 6.70E-06 |
| 20 | GO:0009706: chloroplast inner membrane | 1.64E-05 |
| 21 | GO:0010007: magnesium chelatase complex | 2.05E-05 |
| 22 | GO:0000312: plastid small ribosomal subunit | 9.92E-05 |
| 23 | GO:0015934: large ribosomal subunit | 1.98E-04 |
| 24 | GO:0015935: small ribosomal subunit | 2.13E-04 |
| 25 | GO:0009533: chloroplast stromal thylakoid | 3.16E-04 |
| 26 | GO:0009782: photosystem I antenna complex | 3.60E-04 |
| 27 | GO:0009547: plastid ribosome | 3.60E-04 |
| 28 | GO:0009523: photosystem II | 5.03E-04 |
| 29 | GO:0042170: plastid membrane | 7.83E-04 |
| 30 | GO:0010287: plastoglobule | 1.24E-03 |
| 31 | GO:0033281: TAT protein transport complex | 1.27E-03 |
| 32 | GO:0030076: light-harvesting complex | 1.50E-03 |
| 33 | GO:0042646: plastid nucleoid | 1.83E-03 |
| 34 | GO:0005960: glycine cleavage complex | 1.83E-03 |
| 35 | GO:0042651: thylakoid membrane | 2.05E-03 |
| 36 | GO:0009522: photosystem I | 3.96E-03 |
| 37 | GO:0009536: plastid | 4.54E-03 |
| 38 | GO:0016363: nuclear matrix | 4.67E-03 |
| 39 | GO:0010319: stromule | 5.86E-03 |
| 40 | GO:0009295: nucleoid | 5.86E-03 |
| 41 | GO:0016020: membrane | 6.80E-03 |
| 42 | GO:0032040: small-subunit processome | 1.28E-02 |
| 43 | GO:0019013: viral nucleocapsid | 1.40E-02 |
| 44 | GO:0022627: cytosolic small ribosomal subunit | 1.50E-02 |
| 45 | GO:0016592: mediator complex | 3.81E-02 |
| 46 | GO:0071944: cell periphery | 3.99E-02 |
| 47 | GO:0043231: intracellular membrane-bounded organelle | 4.38E-02 |
| 48 | GO:0030529: intracellular ribonucleoprotein complex | 4.72E-02 |