Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G04780

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
2GO:0097164: ammonium ion metabolic process0.00E+00
3GO:0042425: choline biosynthetic process0.00E+00
4GO:0042493: response to drug0.00E+00
5GO:1905499: trichome papilla formation0.00E+00
6GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
7GO:0006223: uracil salvage0.00E+00
8GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
9GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
10GO:0007638: mechanosensory behavior0.00E+00
11GO:0071555: cell wall organization2.66E-10
12GO:0042546: cell wall biogenesis2.98E-07
13GO:0010411: xyloglucan metabolic process7.67E-07
14GO:0006633: fatty acid biosynthetic process9.78E-07
15GO:0007017: microtubule-based process1.43E-05
16GO:0042335: cuticle development4.16E-05
17GO:0009826: unidimensional cell growth5.16E-05
18GO:0009828: plant-type cell wall loosening1.04E-04
19GO:0016123: xanthophyll biosynthetic process1.61E-04
20GO:0006869: lipid transport2.12E-04
21GO:0016998: cell wall macromolecule catabolic process2.92E-04
22GO:0016051: carbohydrate biosynthetic process3.37E-04
23GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.72E-04
24GO:0010442: guard cell morphogenesis4.21E-04
25GO:0000032: cell wall mannoprotein biosynthetic process4.21E-04
26GO:0042759: long-chain fatty acid biosynthetic process4.21E-04
27GO:0043686: co-translational protein modification4.21E-04
28GO:0032025: response to cobalt ion4.21E-04
29GO:0043007: maintenance of rDNA4.21E-04
30GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway4.21E-04
31GO:0019510: S-adenosylhomocysteine catabolic process4.21E-04
32GO:0060627: regulation of vesicle-mediated transport4.21E-04
33GO:0005980: glycogen catabolic process4.21E-04
34GO:0045489: pectin biosynthetic process5.63E-04
35GO:0009664: plant-type cell wall organization7.18E-04
36GO:0071258: cellular response to gravity9.10E-04
37GO:0006529: asparagine biosynthetic process9.10E-04
38GO:2000123: positive regulation of stomatal complex development9.10E-04
39GO:0043039: tRNA aminoacylation9.10E-04
40GO:0052541: plant-type cell wall cellulose metabolic process9.10E-04
41GO:0010198: synergid death9.10E-04
42GO:0010115: regulation of abscisic acid biosynthetic process9.10E-04
43GO:0033353: S-adenosylmethionine cycle9.10E-04
44GO:0070981: L-asparagine biosynthetic process9.10E-04
45GO:0045717: negative regulation of fatty acid biosynthetic process9.10E-04
46GO:0006949: syncytium formation1.00E-03
47GO:0007267: cell-cell signaling1.01E-03
48GO:0016042: lipid catabolic process1.07E-03
49GO:0006065: UDP-glucuronate biosynthetic process1.48E-03
50GO:0090506: axillary shoot meristem initiation1.48E-03
51GO:0033591: response to L-ascorbic acid1.48E-03
52GO:0046168: glycerol-3-phosphate catabolic process1.48E-03
53GO:0010207: photosystem II assembly1.68E-03
54GO:0010025: wax biosynthetic process2.10E-03
55GO:0050482: arachidonic acid secretion2.14E-03
56GO:0009413: response to flooding2.14E-03
57GO:0009298: GDP-mannose biosynthetic process2.14E-03
58GO:0010371: regulation of gibberellin biosynthetic process2.14E-03
59GO:0007231: osmosensory signaling pathway2.14E-03
60GO:0051639: actin filament network formation2.14E-03
61GO:0009650: UV protection2.14E-03
62GO:0006072: glycerol-3-phosphate metabolic process2.14E-03
63GO:0006424: glutamyl-tRNA aminoacylation2.14E-03
64GO:0046739: transport of virus in multicellular host2.14E-03
65GO:0051016: barbed-end actin filament capping2.14E-03
66GO:0051017: actin filament bundle assembly2.33E-03
67GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway2.88E-03
68GO:0008295: spermidine biosynthetic process2.88E-03
69GO:0044206: UMP salvage2.88E-03
70GO:0009956: radial pattern formation2.88E-03
71GO:0015976: carbon utilization2.88E-03
72GO:0015689: molybdate ion transport2.88E-03
73GO:0051764: actin crosslink formation2.88E-03
74GO:0009765: photosynthesis, light harvesting2.88E-03
75GO:0006085: acetyl-CoA biosynthetic process2.88E-03
76GO:0006183: GTP biosynthetic process2.88E-03
77GO:0033500: carbohydrate homeostasis2.88E-03
78GO:2000038: regulation of stomatal complex development2.88E-03
79GO:0006021: inositol biosynthetic process2.88E-03
80GO:0030245: cellulose catabolic process3.10E-03
81GO:0048359: mucilage metabolic process involved in seed coat development3.68E-03
82GO:0019722: calcium-mediated signaling3.68E-03
83GO:0016120: carotene biosynthetic process3.68E-03
84GO:0006656: phosphatidylcholine biosynthetic process3.68E-03
85GO:0043097: pyrimidine nucleoside salvage3.68E-03
86GO:0045487: gibberellin catabolic process3.68E-03
87GO:0031365: N-terminal protein amino acid modification3.68E-03
88GO:0006665: sphingolipid metabolic process3.68E-03
89GO:0080110: sporopollenin biosynthetic process3.68E-03
90GO:0010375: stomatal complex patterning3.68E-03
91GO:0032543: mitochondrial translation3.68E-03
92GO:0042538: hyperosmotic salinity response4.09E-03
93GO:0000271: polysaccharide biosynthetic process4.31E-03
94GO:0005975: carbohydrate metabolic process4.41E-03
95GO:0006206: pyrimidine nucleobase metabolic process4.56E-03
96GO:0018258: protein O-linked glycosylation via hydroxyproline4.56E-03
97GO:0006014: D-ribose metabolic process4.56E-03
98GO:0046855: inositol phosphate dephosphorylation4.56E-03
99GO:0006561: proline biosynthetic process4.56E-03
100GO:0010405: arabinogalactan protein metabolic process4.56E-03
101GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.56E-03
102GO:0006796: phosphate-containing compound metabolic process4.56E-03
103GO:0009117: nucleotide metabolic process4.56E-03
104GO:0048280: vesicle fusion with Golgi apparatus5.49E-03
105GO:0009554: megasporogenesis5.49E-03
106GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity5.49E-03
107GO:0042372: phylloquinone biosynthetic process5.49E-03
108GO:0009612: response to mechanical stimulus5.49E-03
109GO:0010067: procambium histogenesis5.49E-03
110GO:0071554: cell wall organization or biogenesis5.75E-03
111GO:0032502: developmental process6.14E-03
112GO:0010583: response to cyclopentenone6.14E-03
113GO:0006955: immune response6.49E-03
114GO:0048528: post-embryonic root development6.49E-03
115GO:0009645: response to low light intensity stimulus6.49E-03
116GO:0045010: actin nucleation7.55E-03
117GO:0006875: cellular metal ion homeostasis7.55E-03
118GO:0006644: phospholipid metabolic process7.55E-03
119GO:0009690: cytokinin metabolic process7.55E-03
120GO:0016126: sterol biosynthetic process8.33E-03
121GO:0010497: plasmodesmata-mediated intercellular transport8.67E-03
122GO:0032544: plastid translation8.67E-03
123GO:0009627: systemic acquired resistance9.31E-03
124GO:0042128: nitrate assimilation9.31E-03
125GO:0006754: ATP biosynthetic process9.85E-03
126GO:0048589: developmental growth9.85E-03
127GO:0015780: nucleotide-sugar transport9.85E-03
128GO:0016311: dephosphorylation1.03E-02
129GO:0042761: very long-chain fatty acid biosynthetic process1.11E-02
130GO:0009834: plant-type secondary cell wall biogenesis1.20E-02
131GO:0009688: abscisic acid biosynthetic process1.24E-02
132GO:0043069: negative regulation of programmed cell death1.24E-02
133GO:0006896: Golgi to vacuole transport1.24E-02
134GO:0006535: cysteine biosynthetic process from serine1.24E-02
135GO:0007568: aging1.26E-02
136GO:0009750: response to fructose1.37E-02
137GO:0006415: translational termination1.37E-02
138GO:0018119: peptidyl-cysteine S-nitrosylation1.37E-02
139GO:0010015: root morphogenesis1.37E-02
140GO:0000038: very long-chain fatty acid metabolic process1.37E-02
141GO:0006816: calcium ion transport1.37E-02
142GO:0045490: pectin catabolic process1.41E-02
143GO:0016024: CDP-diacylglycerol biosynthetic process1.51E-02
144GO:0045037: protein import into chloroplast stroma1.51E-02
145GO:0006790: sulfur compound metabolic process1.51E-02
146GO:0006629: lipid metabolic process1.53E-02
147GO:0030036: actin cytoskeleton organization1.65E-02
148GO:0050826: response to freezing1.65E-02
149GO:0006631: fatty acid metabolic process1.65E-02
150GO:0009933: meristem structural organization1.80E-02
151GO:0010223: secondary shoot formation1.80E-02
152GO:0009266: response to temperature stimulus1.80E-02
153GO:0010143: cutin biosynthetic process1.80E-02
154GO:0006541: glutamine metabolic process1.80E-02
155GO:0008643: carbohydrate transport1.94E-02
156GO:0070588: calcium ion transmembrane transport1.95E-02
157GO:0046854: phosphatidylinositol phosphorylation1.95E-02
158GO:0009969: xyloglucan biosynthetic process1.95E-02
159GO:0019853: L-ascorbic acid biosynthetic process1.95E-02
160GO:0010167: response to nitrate1.95E-02
161GO:0006071: glycerol metabolic process2.11E-02
162GO:0007010: cytoskeleton organization2.27E-02
163GO:0019344: cysteine biosynthetic process2.27E-02
164GO:0009116: nucleoside metabolic process2.27E-02
165GO:0019953: sexual reproduction2.43E-02
166GO:0006418: tRNA aminoacylation for protein translation2.43E-02
167GO:0010026: trichome differentiation2.43E-02
168GO:0009658: chloroplast organization2.45E-02
169GO:0009860: pollen tube growth2.69E-02
170GO:0006730: one-carbon metabolic process2.78E-02
171GO:0031348: negative regulation of defense response2.78E-02
172GO:0009411: response to UV2.96E-02
173GO:0001944: vasculature development2.96E-02
174GO:0009294: DNA mediated transformation2.96E-02
175GO:0010089: xylem development3.14E-02
176GO:0010584: pollen exine formation3.14E-02
177GO:0010091: trichome branching3.14E-02
178GO:0080167: response to karrikin3.21E-02
179GO:0016117: carotenoid biosynthetic process3.32E-02
180GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.32E-02
181GO:0042147: retrograde transport, endosome to Golgi3.32E-02
182GO:0042545: cell wall modification3.34E-02
183GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.35E-02
184GO:0080022: primary root development3.51E-02
185GO:0000413: protein peptidyl-prolyl isomerization3.51E-02
186GO:0010087: phloem or xylem histogenesis3.51E-02
187GO:0000226: microtubule cytoskeleton organization3.51E-02
188GO:0009416: response to light stimulus3.58E-02
189GO:0010305: leaf vascular tissue pattern formation3.70E-02
190GO:0010182: sugar mediated signaling pathway3.70E-02
191GO:0009646: response to absence of light3.90E-02
192GO:0019252: starch biosynthetic process4.10E-02
193GO:0006623: protein targeting to vacuole4.10E-02
194GO:0010183: pollen tube guidance4.10E-02
195GO:0006891: intra-Golgi vesicle-mediated transport4.30E-02
196GO:0048510: regulation of timing of transition from vegetative to reproductive phase4.30E-02
197GO:0009567: double fertilization forming a zygote and endosperm4.93E-02
198GO:0016125: sterol metabolic process4.93E-02
RankGO TermAdjusted P value
1GO:0050421: nitrite reductase (NO-forming) activity0.00E+00
2GO:0045435: lycopene epsilon cyclase activity0.00E+00
3GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
4GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity0.00E+00
5GO:0019146: arabinose-5-phosphate isomerase activity0.00E+00
6GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
7GO:0047889: ferredoxin-nitrate reductase activity0.00E+00
8GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
9GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
10GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
11GO:0004496: mevalonate kinase activity0.00E+00
12GO:0048307: ferredoxin-nitrite reductase activity0.00E+00
13GO:0050613: delta14-sterol reductase activity0.00E+00
14GO:0010301: xanthoxin dehydrogenase activity0.00E+00
15GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
16GO:0016762: xyloglucan:xyloglucosyl transferase activity1.35E-07
17GO:0016798: hydrolase activity, acting on glycosyl bonds7.67E-07
18GO:0005200: structural constituent of cytoskeleton7.61E-06
19GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity7.89E-06
20GO:0052689: carboxylic ester hydrolase activity2.15E-05
21GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity5.93E-05
22GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.58E-04
23GO:0051920: peroxiredoxin activity3.09E-04
24GO:0051753: mannan synthase activity3.09E-04
25GO:0016788: hydrolase activity, acting on ester bonds3.44E-04
26GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity4.21E-04
27GO:0015088: copper uptake transmembrane transporter activity4.21E-04
28GO:0042586: peptide deformylase activity4.21E-04
29GO:0004328: formamidase activity4.21E-04
30GO:0010347: L-galactose-1-phosphate phosphatase activity4.21E-04
31GO:0047259: glucomannan 4-beta-mannosyltransferase activity4.21E-04
32GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity4.21E-04
33GO:0030794: (S)-coclaurine-N-methyltransferase activity4.21E-04
34GO:0004560: alpha-L-fucosidase activity4.21E-04
35GO:0004013: adenosylhomocysteinase activity4.21E-04
36GO:0008184: glycogen phosphorylase activity4.21E-04
37GO:0042834: peptidoglycan binding4.21E-04
38GO:0004645: phosphorylase activity4.21E-04
39GO:0080132: fatty acid alpha-hydroxylase activity4.21E-04
40GO:0009374: biotin binding4.21E-04
41GO:0004476: mannose-6-phosphate isomerase activity4.21E-04
42GO:0004831: tyrosine-tRNA ligase activity4.21E-04
43GO:0004071: aspartate-ammonia ligase activity4.21E-04
44GO:0016209: antioxidant activity4.99E-04
45GO:0008289: lipid binding6.08E-04
46GO:0019901: protein kinase binding6.75E-04
47GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors7.29E-04
48GO:0051015: actin filament binding8.67E-04
49GO:0000234: phosphoethanolamine N-methyltransferase activity9.10E-04
50GO:0048531: beta-1,3-galactosyltransferase activity9.10E-04
51GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity9.10E-04
52GO:0003938: IMP dehydrogenase activity9.10E-04
53GO:0004766: spermidine synthase activity9.10E-04
54GO:0052832: inositol monophosphate 3-phosphatase activity9.10E-04
55GO:0008934: inositol monophosphate 1-phosphatase activity9.10E-04
56GO:0052833: inositol monophosphate 4-phosphatase activity9.10E-04
57GO:0004148: dihydrolipoyl dehydrogenase activity1.48E-03
58GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity1.48E-03
59GO:0003979: UDP-glucose 6-dehydrogenase activity1.48E-03
60GO:0005504: fatty acid binding1.48E-03
61GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.10E-03
62GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.10E-03
63GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.10E-03
64GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides2.14E-03
65GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.14E-03
66GO:0016851: magnesium chelatase activity2.14E-03
67GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity2.14E-03
68GO:0003878: ATP citrate synthase activity2.14E-03
69GO:0035529: NADH pyrophosphatase activity2.14E-03
70GO:0016149: translation release factor activity, codon specific2.14E-03
71GO:0004857: enzyme inhibitor activity2.33E-03
72GO:0015098: molybdate ion transmembrane transporter activity2.88E-03
73GO:0004845: uracil phosphoribosyltransferase activity2.88E-03
74GO:0016836: hydro-lyase activity2.88E-03
75GO:0045430: chalcone isomerase activity2.88E-03
76GO:0052793: pectin acetylesterase activity2.88E-03
77GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity3.10E-03
78GO:0008810: cellulase activity3.38E-03
79GO:0004040: amidase activity3.68E-03
80GO:0003989: acetyl-CoA carboxylase activity3.68E-03
81GO:0008514: organic anion transmembrane transporter activity3.68E-03
82GO:0009922: fatty acid elongase activity3.68E-03
83GO:0004623: phospholipase A2 activity3.68E-03
84GO:0051287: NAD binding3.90E-03
85GO:0003924: GTPase activity4.24E-03
86GO:0004366: glycerol-3-phosphate O-acyltransferase activity4.56E-03
87GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity4.56E-03
88GO:0080030: methyl indole-3-acetate esterase activity4.56E-03
89GO:1990714: hydroxyproline O-galactosyltransferase activity4.56E-03
90GO:0016208: AMP binding4.56E-03
91GO:0016462: pyrophosphatase activity4.56E-03
92GO:0004747: ribokinase activity5.49E-03
93GO:0004124: cysteine synthase activity5.49E-03
94GO:0004849: uridine kinase activity5.49E-03
95GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity5.49E-03
96GO:0043295: glutathione binding6.49E-03
97GO:0004427: inorganic diphosphatase activity6.49E-03
98GO:0030599: pectinesterase activity6.51E-03
99GO:0008865: fructokinase activity7.55E-03
100GO:0016413: O-acetyltransferase activity7.86E-03
101GO:0016758: transferase activity, transferring hexosyl groups9.05E-03
102GO:0005525: GTP binding9.34E-03
103GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism9.85E-03
104GO:0003747: translation release factor activity9.85E-03
105GO:0008889: glycerophosphodiester phosphodiesterase activity9.85E-03
106GO:0005381: iron ion transmembrane transporter activity1.11E-02
107GO:0004871: signal transducer activity1.20E-02
108GO:0015020: glucuronosyltransferase activity1.24E-02
109GO:0047372: acylglycerol lipase activity1.37E-02
110GO:0008378: galactosyltransferase activity1.51E-02
111GO:0004089: carbonate dehydratase activity1.65E-02
112GO:0005262: calcium channel activity1.65E-02
113GO:0004565: beta-galactosidase activity1.65E-02
114GO:0004022: alcohol dehydrogenase (NAD) activity1.65E-02
115GO:0008324: cation transmembrane transporter activity2.43E-02
116GO:0033612: receptor serine/threonine kinase binding2.60E-02
117GO:0045330: aspartyl esterase activity2.67E-02
118GO:0045735: nutrient reservoir activity2.86E-02
119GO:0030570: pectate lyase activity2.96E-02
120GO:0004650: polygalacturonase activity3.14E-02
121GO:0004812: aminoacyl-tRNA ligase activity3.32E-02
122GO:0005102: receptor binding3.32E-02
123GO:0003713: transcription coactivator activity3.70E-02
124GO:0050662: coenzyme binding3.90E-02
125GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen4.41E-02
126GO:0030170: pyridoxal phosphate binding4.76E-02
127GO:0016740: transferase activity4.77E-02
128GO:0016791: phosphatase activity4.93E-02
RankGO TermAdjusted P value
1GO:0005835: fatty acid synthase complex0.00E+00
2GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
3GO:0031225: anchored component of membrane2.30E-14
4GO:0005618: cell wall4.17E-13
5GO:0048046: apoplast1.25E-12
6GO:0046658: anchored component of plasma membrane5.16E-12
7GO:0005576: extracellular region1.43E-09
8GO:0005886: plasma membrane1.82E-08
9GO:0009570: chloroplast stroma7.73E-08
10GO:0009505: plant-type cell wall8.67E-08
11GO:0009941: chloroplast envelope3.91E-04
12GO:0009923: fatty acid elongase complex4.21E-04
13GO:0005794: Golgi apparatus6.17E-04
14GO:0045298: tubulin complex7.29E-04
15GO:0009506: plasmodesma7.49E-04
16GO:0009507: chloroplast1.23E-03
17GO:0009509: chromoplast1.48E-03
18GO:0005853: eukaryotic translation elongation factor 1 complex1.48E-03
19GO:0009317: acetyl-CoA carboxylase complex1.48E-03
20GO:0010007: magnesium chelatase complex1.48E-03
21GO:0009543: chloroplast thylakoid lumen1.92E-03
22GO:0005875: microtubule associated complex2.10E-03
23GO:0009346: citrate lyase complex2.14E-03
24GO:0015630: microtubule cytoskeleton2.14E-03
25GO:0032432: actin filament bundle2.14E-03
26GO:0009331: glycerol-3-phosphate dehydrogenase complex2.14E-03
27GO:0031897: Tic complex2.88E-03
28GO:0000139: Golgi membrane3.37E-03
29GO:0009534: chloroplast thylakoid5.11E-03
30GO:0009533: chloroplast stromal thylakoid6.49E-03
31GO:0016020: membrane6.51E-03
32GO:0012507: ER to Golgi transport vesicle membrane7.55E-03
33GO:0009536: plastid7.55E-03
34GO:0005884: actin filament1.37E-02
35GO:0016021: integral component of membrane1.55E-02
36GO:0009579: thylakoid1.57E-02
37GO:0031977: thylakoid lumen1.65E-02
38GO:0005773: vacuole1.68E-02
39GO:0030176: integral component of endoplasmic reticulum membrane1.95E-02
40GO:0005856: cytoskeleton2.01E-02
41GO:0031410: cytoplasmic vesicle2.78E-02
42GO:0015629: actin cytoskeleton2.96E-02
43GO:0005874: microtubule3.08E-02
44GO:0005768: endosome3.20E-02
45GO:0009706: chloroplast inner membrane3.44E-02
46GO:0009504: cell plate4.10E-02
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Gene type



Gene DE type