Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G04039

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0033494: ferulate metabolic process0.00E+00
2GO:0071588: hydrogen peroxide mediated signaling pathway1.13E-05
3GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly8.23E-05
4GO:0018298: protein-chromophore linkage8.76E-05
5GO:0006810: transport1.00E-04
6GO:2000122: negative regulation of stomatal complex development1.14E-04
7GO:0006546: glycine catabolic process1.14E-04
8GO:0010037: response to carbon dioxide1.14E-04
9GO:0015976: carbon utilization1.14E-04
10GO:0009644: response to high light intensity1.63E-04
11GO:0010019: chloroplast-nucleus signaling pathway2.25E-04
12GO:0009645: response to low light intensity stimulus2.66E-04
13GO:0009870: defense response signaling pathway, resistance gene-dependent4.91E-04
14GO:0000038: very long-chain fatty acid metabolic process5.39E-04
15GO:0009773: photosynthetic electron transport in photosystem I5.39E-04
16GO:0010143: cutin biosynthetic process6.92E-04
17GO:0009768: photosynthesis, light harvesting in photosystem I9.08E-04
18GO:0015979: photosynthesis1.07E-03
19GO:0042335: cuticle development1.26E-03
20GO:0048868: pollen tube development1.33E-03
21GO:0000302: response to reactive oxygen species1.52E-03
22GO:0009817: defense response to fungus, incompatible interaction2.32E-03
23GO:0010119: regulation of stomatal movement2.56E-03
24GO:0009631: cold acclimation2.56E-03
25GO:0034599: cellular response to oxidative stress2.80E-03
26GO:0042744: hydrogen peroxide catabolic process6.42E-03
27GO:0009409: response to cold6.46E-03
28GO:0006633: fatty acid biosynthetic process6.87E-03
29GO:0007623: circadian rhythm7.34E-03
30GO:0009658: chloroplast organization9.96E-03
31GO:0032259: methylation1.48E-02
32GO:0009416: response to light stimulus2.29E-02
33GO:0055085: transmembrane transport2.72E-02
34GO:0006979: response to oxidative stress3.82E-02
RankGO TermAdjusted P value
1GO:0004047: aminomethyltransferase activity3.00E-05
2GO:0050734: hydroxycinnamoyltransferase activity5.40E-05
3GO:0016168: chlorophyll binding6.90E-05
4GO:0004659: prenyltransferase activity1.14E-04
5GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.14E-04
6GO:0009922: fatty acid elongase activity1.49E-04
7GO:0016688: L-ascorbate peroxidase activity1.86E-04
8GO:0004130: cytochrome-c peroxidase activity1.86E-04
9GO:0004089: carbonate dehydratase activity6.40E-04
10GO:0102337: 3-oxo-cerotoyl-CoA synthase activity7.99E-04
11GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity7.99E-04
12GO:0031409: pigment binding7.99E-04
13GO:0102336: 3-oxo-arachidoyl-CoA synthase activity7.99E-04
14GO:0004176: ATP-dependent peptidase activity9.65E-04
15GO:0022891: substrate-specific transmembrane transporter activity1.08E-03
16GO:0048038: quinone binding1.52E-03
17GO:0008483: transaminase activity1.80E-03
18GO:0008168: methyltransferase activity9.69E-03
19GO:0043531: ADP binding1.06E-02
20GO:0008233: peptidase activity1.14E-02
21GO:0042803: protein homodimerization activity1.36E-02
22GO:0016740: transferase activity2.64E-02
23GO:0005215: transporter activity4.08E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast4.22E-12
2GO:0009535: chloroplast thylakoid membrane7.61E-10
3GO:0009941: chloroplast envelope1.48E-08
4GO:0009534: chloroplast thylakoid5.79E-07
5GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.95E-06
6GO:0009782: photosystem I antenna complex1.13E-05
7GO:0030076: light-harvesting complex7.45E-04
8GO:0009523: photosystem II1.46E-03
9GO:0009579: thylakoid2.84E-03
10GO:0009706: chloroplast inner membrane5.03E-03
11GO:0010287: plastoglobule5.66E-03
12GO:0031969: chloroplast membrane1.16E-02
13GO:0022626: cytosolic ribosome2.22E-02
14GO:0016021: integral component of membrane2.32E-02
15GO:0016020: membrane2.60E-02
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Gene type



Gene DE type