co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G03750

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006399: tRNA metabolic process	0.00E+00
2	GO:0090706: specification of plant organ position	0.00E+00
3	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
4	GO:1901698: response to nitrogen compound	0.00E+00
5	GO:2000121: regulation of removal of superoxide radicals	0.00E+00
6	GO:0061635: regulation of protein complex stability	0.00E+00
7	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
8	GO:0016553: base conversion or substitution editing	0.00E+00
9	GO:0006412: translation	1.27E-12
10	GO:0042254: ribosome biogenesis	4.54E-09
11	GO:0009735: response to cytokinin	7.33E-07
12	GO:0015979: photosynthesis	3.67E-06
13	GO:0010206: photosystem II repair	1.51E-05
14	GO:2001141: regulation of RNA biosynthetic process	3.17E-05
15	GO:0080170: hydrogen peroxide transmembrane transport	3.17E-05
16	GO:0009773: photosynthetic electron transport in photosystem I	3.39E-05
17	GO:0015976: carbon utilization	5.68E-05
18	GO:0042549: photosystem II stabilization	1.30E-04
19	GO:0000481: maturation of 5S rRNA	2.94E-04
20	GO:0042547: cell wall modification involved in multidimensional cell growth	2.94E-04
21	GO:0042371: vitamin K biosynthetic process	2.94E-04
22	GO:0034337: RNA folding	2.94E-04
23	GO:0010450: inflorescence meristem growth	2.94E-04
24	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	2.94E-04
25	GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process	2.94E-04
26	GO:0000476: maturation of 4.5S rRNA	2.94E-04
27	GO:0000967: rRNA 5'-end processing	2.94E-04
28	GO:0043489: RNA stabilization	2.94E-04
29	GO:0071370: cellular response to gibberellin stimulus	2.94E-04
30	GO:0032544: plastid translation	3.62E-04
31	GO:0071482: cellular response to light stimulus	3.62E-04
32	GO:0009658: chloroplast organization	5.72E-04
33	GO:0010027: thylakoid membrane organization	6.04E-04
34	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	6.45E-04
35	GO:0030388: fructose 1,6-bisphosphate metabolic process	6.45E-04
36	GO:0034470: ncRNA processing	6.45E-04
37	GO:0034755: iron ion transmembrane transport	6.45E-04
38	GO:0009750: response to fructose	6.94E-04
39	GO:0006352: DNA-templated transcription, initiation	6.94E-04
40	GO:0015995: chlorophyll biosynthetic process	7.43E-04
41	GO:0015706: nitrate transport	7.93E-04
42	GO:0006094: gluconeogenesis	8.98E-04
43	GO:0010207: photosystem II assembly	1.01E-03
44	GO:0006696: ergosterol biosynthetic process	1.04E-03
45	GO:0045493: xylan catabolic process	1.04E-03
46	GO:0005977: glycogen metabolic process	1.04E-03
47	GO:0045165: cell fate commitment	1.04E-03
48	GO:0006011: UDP-glucose metabolic process	1.04E-03
49	GO:0006000: fructose metabolic process	1.04E-03
50	GO:0006013: mannose metabolic process	1.04E-03
51	GO:0071705: nitrogen compound transport	1.04E-03
52	GO:0010167: response to nitrate	1.13E-03
53	GO:0006636: unsaturated fatty acid biosynthetic process	1.25E-03
54	GO:0045490: pectin catabolic process	1.39E-03
55	GO:1902476: chloride transmembrane transport	1.50E-03
56	GO:0051513: regulation of monopolar cell growth	1.50E-03
57	GO:0009800: cinnamic acid biosynthetic process	1.50E-03
58	GO:0010114: response to red light	1.56E-03
59	GO:0009814: defense response, incompatible interaction	1.83E-03
60	GO:0010037: response to carbon dioxide	2.01E-03
61	GO:0006542: glutamine biosynthetic process	2.01E-03
62	GO:0019676: ammonia assimilation cycle	2.01E-03
63	GO:0071249: cellular response to nitrate	2.01E-03
64	GO:0045727: positive regulation of translation	2.01E-03
65	GO:0015994: chlorophyll metabolic process	2.01E-03
66	GO:2000122: negative regulation of stomatal complex development	2.01E-03
67	GO:0030104: water homeostasis	2.01E-03
68	GO:0034220: ion transmembrane transport	2.54E-03
69	GO:1902183: regulation of shoot apical meristem development	2.56E-03
70	GO:0010158: abaxial cell fate specification	2.56E-03
71	GO:0009247: glycolipid biosynthetic process	2.56E-03
72	GO:0034052: positive regulation of plant-type hypersensitive response	2.56E-03
73	GO:0032543: mitochondrial translation	2.56E-03
74	GO:0010942: positive regulation of cell death	3.16E-03
75	GO:1902456: regulation of stomatal opening	3.16E-03
76	GO:0006559: L-phenylalanine catabolic process	3.16E-03
77	GO:0032973: amino acid export	3.16E-03
78	GO:0000741: karyogamy	3.16E-03
79	GO:0009793: embryo development ending in seed dormancy	3.34E-03
80	GO:0042545: cell wall modification	3.43E-03
81	GO:0006810: transport	3.48E-03
82	GO:0010019: chloroplast-nucleus signaling pathway	3.81E-03
83	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	3.81E-03
84	GO:0009610: response to symbiotic fungus	4.49E-03
85	GO:0009772: photosynthetic electron transport in photosystem II	4.49E-03
86	GO:0043090: amino acid import	4.49E-03
87	GO:0006821: chloride transport	4.49E-03
88	GO:0050829: defense response to Gram-negative bacterium	4.49E-03
89	GO:0032508: DNA duplex unwinding	5.21E-03
90	GO:0010492: maintenance of shoot apical meristem identity	5.21E-03
91	GO:0052543: callose deposition in cell wall	5.21E-03
92	GO:0006402: mRNA catabolic process	5.21E-03
93	GO:0030091: protein repair	5.21E-03
94	GO:0042255: ribosome assembly	5.21E-03
95	GO:0043068: positive regulation of programmed cell death	5.21E-03
96	GO:0006605: protein targeting	5.21E-03
97	GO:0019375: galactolipid biosynthetic process	5.21E-03
98	GO:0042128: nitrate assimilation	5.45E-03
99	GO:0010411: xyloglucan metabolic process	5.75E-03
100	GO:0010093: specification of floral organ identity	5.98E-03
101	GO:0009699: phenylpropanoid biosynthetic process	5.98E-03
102	GO:0006002: fructose 6-phosphate metabolic process	5.98E-03
103	GO:0009657: plastid organization	5.98E-03
104	GO:0018298: protein-chromophore linkage	6.37E-03
105	GO:0009051: pentose-phosphate shunt, oxidative branch	6.77E-03
106	GO:0006098: pentose-phosphate shunt	6.77E-03
107	GO:0009821: alkaloid biosynthetic process	6.77E-03
108	GO:0090305: nucleic acid phosphodiester bond hydrolysis	6.77E-03
109	GO:0080144: amino acid homeostasis	6.77E-03
110	GO:0048507: meristem development	6.77E-03
111	GO:2000024: regulation of leaf development	6.77E-03
112	GO:0007623: circadian rhythm	7.15E-03
113	GO:0010205: photoinhibition	7.60E-03
114	GO:0009637: response to blue light	8.08E-03
115	GO:0006949: syncytium formation	8.48E-03
116	GO:0009299: mRNA transcription	8.48E-03
117	GO:0009409: response to cold	8.87E-03
118	GO:0018119: peptidyl-cysteine S-nitrosylation	9.38E-03
119	GO:0009698: phenylpropanoid metabolic process	9.38E-03
120	GO:0019684: photosynthesis, light reaction	9.38E-03
121	GO:0009089: lysine biosynthetic process via diaminopimelate	9.38E-03
122	GO:0043085: positive regulation of catalytic activity	9.38E-03
123	GO:0006879: cellular iron ion homeostasis	9.38E-03
124	GO:0005983: starch catabolic process	1.03E-02
125	GO:0006006: glucose metabolic process	1.13E-02
126	GO:2000028: regulation of photoperiodism, flowering	1.13E-02
127	GO:0009725: response to hormone	1.13E-02
128	GO:0009767: photosynthetic electron transport chain	1.13E-02
129	GO:0005986: sucrose biosynthetic process	1.13E-02
130	GO:0009933: meristem structural organization	1.23E-02
131	GO:0019253: reductive pentose-phosphate cycle	1.23E-02
132	GO:0009664: plant-type cell wall organization	1.31E-02
133	GO:0010030: positive regulation of seed germination	1.33E-02
134	GO:0005985: sucrose metabolic process	1.33E-02
135	GO:0006833: water transport	1.44E-02
136	GO:0042742: defense response to bacterium	1.54E-02
137	GO:0005992: trehalose biosynthetic process	1.55E-02
138	GO:0009944: polarity specification of adaxial/abaxial axis	1.55E-02
139	GO:0000027: ribosomal large subunit assembly	1.55E-02
140	GO:0006418: tRNA aminoacylation for protein translation	1.66E-02
141	GO:0009768: photosynthesis, light harvesting in photosystem I	1.66E-02
142	GO:0006096: glycolytic process	1.67E-02
143	GO:0031408: oxylipin biosynthetic process	1.78E-02
144	GO:0009626: plant-type hypersensitive response	1.78E-02
145	GO:0009740: gibberellic acid mediated signaling pathway	1.89E-02
146	GO:0019748: secondary metabolic process	1.90E-02
147	GO:0006730: one-carbon metabolic process	1.90E-02
148	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.02E-02
149	GO:0006396: RNA processing	2.07E-02
150	GO:0009306: protein secretion	2.14E-02
151	GO:0006284: base-excision repair	2.14E-02
152	GO:0016117: carotenoid biosynthetic process	2.27E-02
153	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.27E-02
154	GO:0000413: protein peptidyl-prolyl isomerization	2.40E-02
155	GO:0010087: phloem or xylem histogenesis	2.40E-02
156	GO:0042631: cellular response to water deprivation	2.40E-02
157	GO:0080022: primary root development	2.40E-02
158	GO:0010197: polar nucleus fusion	2.53E-02
159	GO:0010154: fruit development	2.53E-02
160	GO:0009749: response to glucose	2.80E-02
161	GO:0009790: embryo development	2.94E-02
162	GO:0002229: defense response to oomycetes	2.94E-02
163	GO:0000302: response to reactive oxygen species	2.94E-02
164	GO:0032502: developmental process	3.08E-02
165	GO:0030163: protein catabolic process	3.22E-02
166	GO:0046686: response to cadmium ion	3.26E-02
167	GO:0009828: plant-type cell wall loosening	3.37E-02
168	GO:0009451: RNA modification	3.56E-02
169	GO:0001666: response to hypoxia	3.82E-02
170	GO:0016311: dephosphorylation	4.44E-02
171	GO:0048481: plant ovule development	4.61E-02
172	GO:0006979: response to oxidative stress	4.62E-02
173	GO:0000160: phosphorelay signal transduction system	4.77E-02
174	GO:0009651: response to salt stress	4.87E-02
175	GO:0010218: response to far red light	4.94E-02
176	GO:0009407: toxin catabolic process	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
2	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
3	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
4	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
5	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
6	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
7	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
8	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
9	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
10	GO:0046905: phytoene synthase activity	0.00E+00
11	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
12	GO:0019843: rRNA binding	1.03E-21
13	GO:0003735: structural constituent of ribosome	6.11E-16
14	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	3.96E-06
15	GO:0001053: plastid sigma factor activity	5.68E-05
16	GO:0016987: sigma factor activity	5.68E-05
17	GO:0008266: poly(U) RNA binding	6.35E-05
18	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.79E-04
19	GO:0046906: tetrapyrrole binding	2.94E-04
20	GO:0009671: nitrate:proton symporter activity	2.94E-04
21	GO:0051996: squalene synthase activity	2.94E-04
22	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	3.62E-04
23	GO:0047746: chlorophyllase activity	6.45E-04
24	GO:0042389: omega-3 fatty acid desaturase activity	6.45E-04
25	GO:0004618: phosphoglycerate kinase activity	6.45E-04
26	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	6.45E-04
27	GO:0043425: bHLH transcription factor binding	6.45E-04
28	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	6.45E-04
29	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	6.45E-04
30	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	6.45E-04
31	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	6.45E-04
32	GO:0004089: carbonate dehydratase activity	8.98E-04
33	GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity	1.04E-03
34	GO:0045548: phenylalanine ammonia-lyase activity	1.04E-03
35	GO:0002161: aminoacyl-tRNA editing activity	1.04E-03
36	GO:0005528: FK506 binding	1.39E-03
37	GO:0035250: UDP-galactosyltransferase activity	1.50E-03
38	GO:0016851: magnesium chelatase activity	1.50E-03
39	GO:0046556: alpha-L-arabinofuranosidase activity	2.01E-03
40	GO:0004345: glucose-6-phosphate dehydrogenase activity	2.01E-03
41	GO:0009044: xylan 1,4-beta-xylosidase activity	2.01E-03
42	GO:0005253: anion channel activity	2.01E-03
43	GO:0003727: single-stranded RNA binding	2.17E-03
44	GO:0004356: glutamate-ammonia ligase activity	2.56E-03
45	GO:0008725: DNA-3-methyladenine glycosylase activity	2.56E-03
46	GO:0045330: aspartyl esterase activity	2.59E-03
47	GO:0005247: voltage-gated chloride channel activity	3.16E-03
48	GO:0004332: fructose-bisphosphate aldolase activity	3.16E-03
49	GO:0004130: cytochrome-c peroxidase activity	3.16E-03
50	GO:0030599: pectinesterase activity	3.30E-03
51	GO:0004559: alpha-mannosidase activity	3.81E-03
52	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.81E-03
53	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.81E-03
54	GO:0019899: enzyme binding	4.49E-03
55	GO:0015250: water channel activity	4.88E-03
56	GO:0016168: chlorophyll binding	5.16E-03
57	GO:0004564: beta-fructofuranosidase activity	5.21E-03
58	GO:0004252: serine-type endopeptidase activity	5.42E-03
59	GO:0008236: serine-type peptidase activity	6.06E-03
60	GO:0016844: strictosidine synthase activity	7.60E-03
61	GO:0015112: nitrate transmembrane transporter activity	7.60E-03
62	GO:0004575: sucrose alpha-glucosidase activity	7.60E-03
63	GO:0005381: iron ion transmembrane transporter activity	7.60E-03
64	GO:0004805: trehalose-phosphatase activity	8.48E-03
65	GO:0000049: tRNA binding	1.03E-02
66	GO:0004185: serine-type carboxypeptidase activity	1.04E-02
67	GO:0003729: mRNA binding	1.07E-02
68	GO:0031072: heat shock protein binding	1.13E-02
69	GO:0051537: 2 iron, 2 sulfur cluster binding	1.13E-02
70	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.41E-02
71	GO:0031409: pigment binding	1.44E-02
72	GO:0003690: double-stranded DNA binding	1.46E-02
73	GO:0022891: substrate-specific transmembrane transporter activity	2.02E-02
74	GO:0030570: pectate lyase activity	2.02E-02
75	GO:0003756: protein disulfide isomerase activity	2.14E-02
76	GO:0004812: aminoacyl-tRNA ligase activity	2.27E-02
77	GO:0050662: coenzyme binding	2.66E-02
78	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.94E-02
79	GO:0004518: nuclease activity	3.08E-02
80	GO:0000156: phosphorelay response regulator activity	3.22E-02
81	GO:0046910: pectinesterase inhibitor activity	3.24E-02
82	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.29E-02
83	GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding	4.44E-02
84	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.61E-02
85	GO:0005096: GTPase activator activity	4.77E-02
86	GO:0015238: drug transmembrane transporter activity	4.77E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0044391: ribosomal subunit	0.00E+00
3	GO:0009507: chloroplast	4.73E-38
4	GO:0009535: chloroplast thylakoid membrane	8.37E-26
5	GO:0009941: chloroplast envelope	1.45E-25
6	GO:0009570: chloroplast stroma	3.52E-22
7	GO:0009534: chloroplast thylakoid	1.31E-17
8	GO:0009579: thylakoid	6.43E-14
9	GO:0009543: chloroplast thylakoid lumen	1.09E-13
10	GO:0005840: ribosome	6.92E-11
11	GO:0000312: plastid small ribosomal subunit	1.74E-06
12	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.51E-05
13	GO:0031977: thylakoid lumen	1.52E-05
14	GO:0031969: chloroplast membrane	2.27E-05
15	GO:0000311: plastid large ribosomal subunit	4.25E-05
16	GO:0030095: chloroplast photosystem II	6.35E-05
17	GO:0009654: photosystem II oxygen evolving complex	1.22E-04
18	GO:0015935: small ribosomal subunit	1.41E-04
19	GO:0009344: nitrite reductase complex [NAD(P)H]	2.94E-04
20	GO:0009547: plastid ribosome	2.94E-04
21	GO:0043674: columella	2.94E-04
22	GO:0009523: photosystem II	3.43E-04
23	GO:0019898: extrinsic component of membrane	3.43E-04
24	GO:0016020: membrane	4.48E-04
25	GO:0042170: plastid membrane	6.45E-04
26	GO:0005618: cell wall	6.68E-04
27	GO:0009505: plant-type cell wall	7.74E-04
28	GO:0010007: magnesium chelatase complex	1.04E-03
29	GO:0009531: secondary cell wall	1.50E-03
30	GO:0005775: vacuolar lumen	1.50E-03
31	GO:0042646: plastid nucleoid	1.50E-03
32	GO:0009522: photosystem I	2.94E-03
33	GO:0034707: chloride channel complex	3.16E-03
34	GO:0009706: chloroplast inner membrane	3.56E-03
35	GO:0016363: nuclear matrix	3.81E-03
36	GO:0009295: nucleoid	4.35E-03
37	GO:0010287: plastoglobule	4.43E-03
38	GO:0009533: chloroplast stromal thylakoid	4.49E-03
39	GO:0042807: central vacuole	4.49E-03
40	GO:0030529: intracellular ribonucleoprotein complex	4.88E-03
41	GO:0005763: mitochondrial small ribosomal subunit	6.77E-03
42	GO:0015934: large ribosomal subunit	7.37E-03
43	GO:0048046: apoplast	9.64E-03
44	GO:0022627: cytosolic small ribosomal subunit	1.02E-02
45	GO:0032040: small-subunit processome	1.03E-02
46	GO:0019013: viral nucleocapsid	1.13E-02
47	GO:0030076: light-harvesting complex	1.33E-02
48	GO:0022626: cytosolic ribosome	1.52E-02
49	GO:0005773: vacuole	2.28E-02
50	GO:0031225: anchored component of membrane	3.14E-02
51	GO:0071944: cell periphery	3.22E-02
52	GO:0009705: plant-type vacuole membrane	3.48E-02
53	GO:0010319: stromule	3.51E-02