GO Enrichment Analysis of Co-expressed Genes with
AT2G02950
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 2 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 3 | GO:0005996: monosaccharide metabolic process | 0.00E+00 |
| 4 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 5 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 6 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 7 | GO:0015979: photosynthesis | 1.70E-10 |
| 8 | GO:0009773: photosynthetic electron transport in photosystem I | 9.00E-07 |
| 9 | GO:0015995: chlorophyll biosynthetic process | 5.58E-06 |
| 10 | GO:0010206: photosystem II repair | 1.84E-05 |
| 11 | GO:2001141: regulation of RNA biosynthetic process | 3.65E-05 |
| 12 | GO:0006546: glycine catabolic process | 6.53E-05 |
| 13 | GO:0045727: positive regulation of translation | 6.53E-05 |
| 14 | GO:0010207: photosystem II assembly | 7.60E-05 |
| 15 | GO:0006655: phosphatidylglycerol biosynthetic process | 1.48E-04 |
| 16 | GO:0042549: photosystem II stabilization | 1.48E-04 |
| 17 | GO:0009644: response to high light intensity | 2.99E-04 |
| 18 | GO:0000476: maturation of 4.5S rRNA | 3.19E-04 |
| 19 | GO:0000967: rRNA 5'-end processing | 3.19E-04 |
| 20 | GO:0043489: RNA stabilization | 3.19E-04 |
| 21 | GO:0071370: cellular response to gibberellin stimulus | 3.19E-04 |
| 22 | GO:0000481: maturation of 5S rRNA | 3.19E-04 |
| 23 | GO:0071461: cellular response to redox state | 3.19E-04 |
| 24 | GO:0034337: RNA folding | 3.19E-04 |
| 25 | GO:0010729: positive regulation of hydrogen peroxide biosynthetic process | 3.19E-04 |
| 26 | GO:0032544: plastid translation | 4.07E-04 |
| 27 | GO:0071482: cellular response to light stimulus | 4.07E-04 |
| 28 | GO:0010205: photoinhibition | 5.78E-04 |
| 29 | GO:0034755: iron ion transmembrane transport | 6.97E-04 |
| 30 | GO:0080005: photosystem stoichiometry adjustment | 6.97E-04 |
| 31 | GO:1900871: chloroplast mRNA modification | 6.97E-04 |
| 32 | GO:0034470: ncRNA processing | 6.97E-04 |
| 33 | GO:0019684: photosynthesis, light reaction | 7.78E-04 |
| 34 | GO:0006352: DNA-templated transcription, initiation | 7.78E-04 |
| 35 | GO:0016024: CDP-diacylglycerol biosynthetic process | 8.89E-04 |
| 36 | GO:0018298: protein-chromophore linkage | 9.78E-04 |
| 37 | GO:0009767: photosynthetic electron transport chain | 1.01E-03 |
| 38 | GO:0006013: mannose metabolic process | 1.13E-03 |
| 39 | GO:0006518: peptide metabolic process | 1.13E-03 |
| 40 | GO:0045493: xylan catabolic process | 1.13E-03 |
| 41 | GO:2001295: malonyl-CoA biosynthetic process | 1.13E-03 |
| 42 | GO:0006810: transport | 1.51E-03 |
| 43 | GO:0009226: nucleotide-sugar biosynthetic process | 1.62E-03 |
| 44 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 1.62E-03 |
| 45 | GO:0051513: regulation of monopolar cell growth | 1.62E-03 |
| 46 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.72E-03 |
| 47 | GO:0010114: response to red light | 1.81E-03 |
| 48 | GO:0006412: translation | 2.14E-03 |
| 49 | GO:2000122: negative regulation of stomatal complex development | 2.18E-03 |
| 50 | GO:0010037: response to carbon dioxide | 2.18E-03 |
| 51 | GO:0015976: carbon utilization | 2.18E-03 |
| 52 | GO:0010023: proanthocyanidin biosynthetic process | 2.18E-03 |
| 53 | GO:0019464: glycine decarboxylation via glycine cleavage system | 2.18E-03 |
| 54 | GO:0015994: chlorophyll metabolic process | 2.18E-03 |
| 55 | GO:0045038: protein import into chloroplast thylakoid membrane | 2.78E-03 |
| 56 | GO:0009247: glycolipid biosynthetic process | 2.78E-03 |
| 57 | GO:0000413: protein peptidyl-prolyl isomerization | 2.86E-03 |
| 58 | GO:0042631: cellular response to water deprivation | 2.86E-03 |
| 59 | GO:0009658: chloroplast organization | 3.26E-03 |
| 60 | GO:0032973: amino acid export | 3.43E-03 |
| 61 | GO:1902456: regulation of stomatal opening | 3.43E-03 |
| 62 | GO:0010190: cytochrome b6f complex assembly | 3.43E-03 |
| 63 | GO:0010256: endomembrane system organization | 3.43E-03 |
| 64 | GO:0009409: response to cold | 3.80E-03 |
| 65 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 4.13E-03 |
| 66 | GO:0010019: chloroplast-nucleus signaling pathway | 4.13E-03 |
| 67 | GO:0009735: response to cytokinin | 4.78E-03 |
| 68 | GO:0010196: nonphotochemical quenching | 4.87E-03 |
| 69 | GO:0009645: response to low light intensity stimulus | 4.87E-03 |
| 70 | GO:0009772: photosynthetic electron transport in photosystem II | 4.87E-03 |
| 71 | GO:0043090: amino acid import | 4.87E-03 |
| 72 | GO:1900056: negative regulation of leaf senescence | 4.87E-03 |
| 73 | GO:0010027: thylakoid membrane organization | 5.50E-03 |
| 74 | GO:0009819: drought recovery | 5.66E-03 |
| 75 | GO:0019375: galactolipid biosynthetic process | 5.66E-03 |
| 76 | GO:0032508: DNA duplex unwinding | 5.66E-03 |
| 77 | GO:0042128: nitrate assimilation | 6.15E-03 |
| 78 | GO:0009657: plastid organization | 6.49E-03 |
| 79 | GO:0009821: alkaloid biosynthetic process | 7.36E-03 |
| 80 | GO:0090305: nucleic acid phosphodiester bond hydrolysis | 7.36E-03 |
| 81 | GO:0080144: amino acid homeostasis | 7.36E-03 |
| 82 | GO:0000373: Group II intron splicing | 7.36E-03 |
| 83 | GO:0009051: pentose-phosphate shunt, oxidative branch | 7.36E-03 |
| 84 | GO:1900865: chloroplast RNA modification | 8.27E-03 |
| 85 | GO:0009638: phototropism | 8.27E-03 |
| 86 | GO:0009451: RNA modification | 8.58E-03 |
| 87 | GO:0009637: response to blue light | 9.12E-03 |
| 88 | GO:0008152: metabolic process | 9.49E-03 |
| 89 | GO:0009089: lysine biosynthetic process via diaminopimelate | 1.02E-02 |
| 90 | GO:0043085: positive regulation of catalytic activity | 1.02E-02 |
| 91 | GO:0006879: cellular iron ion homeostasis | 1.02E-02 |
| 92 | GO:0000272: polysaccharide catabolic process | 1.02E-02 |
| 93 | GO:0018119: peptidyl-cysteine S-nitrosylation | 1.02E-02 |
| 94 | GO:0006006: glucose metabolic process | 1.23E-02 |
| 95 | GO:0009718: anthocyanin-containing compound biosynthetic process | 1.23E-02 |
| 96 | GO:0006094: gluconeogenesis | 1.23E-02 |
| 97 | GO:0005985: sucrose metabolic process | 1.45E-02 |
| 98 | GO:0010030: positive regulation of seed germination | 1.45E-02 |
| 99 | GO:0006636: unsaturated fatty acid biosynthetic process | 1.57E-02 |
| 100 | GO:0006364: rRNA processing | 1.59E-02 |
| 101 | GO:0009723: response to ethylene | 1.75E-02 |
| 102 | GO:0006417: regulation of translation | 1.76E-02 |
| 103 | GO:0006418: tRNA aminoacylation for protein translation | 1.81E-02 |
| 104 | GO:0042742: defense response to bacterium | 1.90E-02 |
| 105 | GO:0061077: chaperone-mediated protein folding | 1.94E-02 |
| 106 | GO:0006012: galactose metabolic process | 2.20E-02 |
| 107 | GO:0009306: protein secretion | 2.33E-02 |
| 108 | GO:0006396: RNA processing | 2.34E-02 |
| 109 | GO:0045454: cell redox homeostasis | 2.40E-02 |
| 110 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 2.47E-02 |
| 111 | GO:0080022: primary root development | 2.61E-02 |
| 112 | GO:0032259: methylation | 2.95E-02 |
| 113 | GO:0009793: embryo development ending in seed dormancy | 3.10E-02 |
| 114 | GO:0002229: defense response to oomycetes | 3.20E-02 |
| 115 | GO:0010193: response to ozone | 3.20E-02 |
| 116 | GO:0000302: response to reactive oxygen species | 3.20E-02 |
| 117 | GO:0080156: mitochondrial mRNA modification | 3.20E-02 |
| 118 | GO:0042744: hydrogen peroxide catabolic process | 3.24E-02 |
| 119 | GO:0006397: mRNA processing | 3.28E-02 |
| 120 | GO:0030163: protein catabolic process | 3.51E-02 |
| 121 | GO:0071281: cellular response to iron ion | 3.51E-02 |
| 122 | GO:0006633: fatty acid biosynthetic process | 3.57E-02 |
| 123 | GO:0007623: circadian rhythm | 3.92E-02 |
| 124 | GO:0010468: regulation of gene expression | 4.66E-02 |
| 125 | GO:0010411: xyloglucan metabolic process | 4.67E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity | 0.00E+00 |
| 2 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 3 | GO:0061634: alpha-D-xyloside xylohydrolase | 0.00E+00 |
| 4 | GO:0080176: xyloglucan 1,6-alpha-xylosidase activity | 0.00E+00 |
| 5 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 6 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 7 | GO:0047513: 1,2-alpha-L-fucosidase activity | 0.00E+00 |
| 8 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.34E-10 |
| 9 | GO:0005528: FK506 binding | 1.63E-09 |
| 10 | GO:0019843: rRNA binding | 3.88E-09 |
| 11 | GO:0016851: magnesium chelatase activity | 1.73E-07 |
| 12 | GO:0001053: plastid sigma factor activity | 6.53E-05 |
| 13 | GO:0016987: sigma factor activity | 6.53E-05 |
| 14 | GO:0008266: poly(U) RNA binding | 7.60E-05 |
| 15 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 2.02E-04 |
| 16 | GO:0003867: 4-aminobutyrate transaminase activity | 3.19E-04 |
| 17 | GO:0045485: omega-6 fatty acid desaturase activity | 3.19E-04 |
| 18 | GO:0046906: tetrapyrrole binding | 3.19E-04 |
| 19 | GO:0003735: structural constituent of ribosome | 3.61E-04 |
| 20 | GO:0008967: phosphoglycolate phosphatase activity | 6.97E-04 |
| 21 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 6.97E-04 |
| 22 | GO:0047746: chlorophyllase activity | 6.97E-04 |
| 23 | GO:0016868: intramolecular transferase activity, phosphotransferases | 6.97E-04 |
| 24 | GO:0010297: heteropolysaccharide binding | 6.97E-04 |
| 25 | GO:0004047: aminomethyltransferase activity | 6.97E-04 |
| 26 | GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity | 6.97E-04 |
| 27 | GO:0016168: chlorophyll binding | 7.53E-04 |
| 28 | GO:0002161: aminoacyl-tRNA editing activity | 1.13E-03 |
| 29 | GO:0004075: biotin carboxylase activity | 1.13E-03 |
| 30 | GO:0030267: glyoxylate reductase (NADP) activity | 1.13E-03 |
| 31 | GO:0031409: pigment binding | 1.40E-03 |
| 32 | GO:0035250: UDP-galactosyltransferase activity | 1.62E-03 |
| 33 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 1.62E-03 |
| 34 | GO:0051537: 2 iron, 2 sulfur cluster binding | 2.00E-03 |
| 35 | GO:1990137: plant seed peroxidase activity | 2.18E-03 |
| 36 | GO:0009044: xylan 1,4-beta-xylosidase activity | 2.18E-03 |
| 37 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 2.18E-03 |
| 38 | GO:0046556: alpha-L-arabinofuranosidase activity | 2.18E-03 |
| 39 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 2.18E-03 |
| 40 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 2.18E-03 |
| 41 | GO:0003989: acetyl-CoA carboxylase activity | 2.78E-03 |
| 42 | GO:0050662: coenzyme binding | 3.32E-03 |
| 43 | GO:0016788: hydrolase activity, acting on ester bonds | 3.35E-03 |
| 44 | GO:0004130: cytochrome-c peroxidase activity | 3.43E-03 |
| 45 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 3.43E-03 |
| 46 | GO:0042578: phosphoric ester hydrolase activity | 3.43E-03 |
| 47 | GO:0004332: fructose-bisphosphate aldolase activity | 3.43E-03 |
| 48 | GO:0016787: hydrolase activity | 3.71E-03 |
| 49 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 4.13E-03 |
| 50 | GO:0004559: alpha-mannosidase activity | 4.13E-03 |
| 51 | GO:0051920: peroxiredoxin activity | 4.13E-03 |
| 52 | GO:0019899: enzyme binding | 4.87E-03 |
| 53 | GO:0005509: calcium ion binding | 5.31E-03 |
| 54 | GO:0004033: aldo-keto reductase (NADP) activity | 5.66E-03 |
| 55 | GO:0004564: beta-fructofuranosidase activity | 5.66E-03 |
| 56 | GO:0016209: antioxidant activity | 5.66E-03 |
| 57 | GO:0004034: aldose 1-epimerase activity | 5.66E-03 |
| 58 | GO:0004252: serine-type endopeptidase activity | 6.31E-03 |
| 59 | GO:0008236: serine-type peptidase activity | 6.83E-03 |
| 60 | GO:0003723: RNA binding | 6.88E-03 |
| 61 | GO:0004222: metalloendopeptidase activity | 7.93E-03 |
| 62 | GO:0004575: sucrose alpha-glucosidase activity | 8.27E-03 |
| 63 | GO:0005381: iron ion transmembrane transporter activity | 8.27E-03 |
| 64 | GO:0016844: strictosidine synthase activity | 8.27E-03 |
| 65 | GO:0000049: tRNA binding | 1.12E-02 |
| 66 | GO:0004565: beta-galactosidase activity | 1.23E-02 |
| 67 | GO:0004089: carbonate dehydratase activity | 1.23E-02 |
| 68 | GO:0031072: heat shock protein binding | 1.23E-02 |
| 69 | GO:0004601: peroxidase activity | 1.45E-02 |
| 70 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.59E-02 |
| 71 | GO:0004707: MAP kinase activity | 1.94E-02 |
| 72 | GO:0004176: ATP-dependent peptidase activity | 1.94E-02 |
| 73 | GO:0022891: substrate-specific transmembrane transporter activity | 2.20E-02 |
| 74 | GO:0003756: protein disulfide isomerase activity | 2.33E-02 |
| 75 | GO:0003727: single-stranded RNA binding | 2.33E-02 |
| 76 | GO:0004812: aminoacyl-tRNA ligase activity | 2.47E-02 |
| 77 | GO:0004871: signal transducer activity | 2.54E-02 |
| 78 | GO:0016853: isomerase activity | 2.90E-02 |
| 79 | GO:0016491: oxidoreductase activity | 3.02E-02 |
| 80 | GO:0048038: quinone binding | 3.20E-02 |
| 81 | GO:0004518: nuclease activity | 3.35E-02 |
| 82 | GO:0004519: endonuclease activity | 3.45E-02 |
| 83 | GO:0016791: phosphatase activity | 3.67E-02 |
| 84 | GO:0008483: transaminase activity | 3.83E-02 |
| 85 | GO:0008237: metallopeptidase activity | 3.83E-02 |
| 86 | GO:0003743: translation initiation factor activity | 4.57E-02 |
| 87 | GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding | 4.84E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005943: phosphatidylinositol 3-kinase complex, class IA | 0.00E+00 |
| 2 | GO:0009344: nitrite reductase complex [NAD(P)H] | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 4.02E-64 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 1.61E-36 |
| 5 | GO:0009534: chloroplast thylakoid | 2.85E-32 |
| 6 | GO:0009570: chloroplast stroma | 5.49E-30 |
| 7 | GO:0009543: chloroplast thylakoid lumen | 3.40E-28 |
| 8 | GO:0009941: chloroplast envelope | 1.50E-23 |
| 9 | GO:0009579: thylakoid | 3.79E-17 |
| 10 | GO:0031977: thylakoid lumen | 1.11E-12 |
| 11 | GO:0030095: chloroplast photosystem II | 4.96E-10 |
| 12 | GO:0010007: magnesium chelatase complex | 3.57E-08 |
| 13 | GO:0009654: photosystem II oxygen evolving complex | 1.38E-07 |
| 14 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.79E-07 |
| 15 | GO:0019898: extrinsic component of membrane | 1.11E-06 |
| 16 | GO:0009523: photosystem II | 2.90E-05 |
| 17 | GO:0005840: ribosome | 4.20E-05 |
| 18 | GO:0010287: plastoglobule | 1.53E-04 |
| 19 | GO:0031969: chloroplast membrane | 2.15E-04 |
| 20 | GO:0009533: chloroplast stromal thylakoid | 2.64E-04 |
| 21 | GO:0009782: photosystem I antenna complex | 3.19E-04 |
| 22 | GO:0009547: plastid ribosome | 3.19E-04 |
| 23 | GO:0080085: signal recognition particle, chloroplast targeting | 6.97E-04 |
| 24 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 6.97E-04 |
| 25 | GO:0009706: chloroplast inner membrane | 7.33E-04 |
| 26 | GO:0000311: plastid large ribosomal subunit | 8.89E-04 |
| 27 | GO:0030076: light-harvesting complex | 1.26E-03 |
| 28 | GO:0005960: glycine cleavage complex | 1.62E-03 |
| 29 | GO:0005775: vacuolar lumen | 1.62E-03 |
| 30 | GO:0042651: thylakoid membrane | 1.72E-03 |
| 31 | GO:0010319: stromule | 4.90E-03 |
| 32 | GO:0048046: apoplast | 5.09E-03 |
| 33 | GO:0030529: intracellular ribonucleoprotein complex | 5.50E-03 |
| 34 | GO:0009538: photosystem I reaction center | 5.66E-03 |
| 35 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 6.49E-03 |
| 36 | GO:0005811: lipid particle | 6.49E-03 |
| 37 | GO:0009505: plant-type cell wall | 9.66E-03 |
| 38 | GO:0032040: small-subunit processome | 1.12E-02 |
| 39 | GO:0046658: anchored component of plasma membrane | 1.19E-02 |
| 40 | GO:0000312: plastid small ribosomal subunit | 1.34E-02 |
| 41 | GO:0015935: small ribosomal subunit | 1.94E-02 |
| 42 | GO:0009536: plastid | 2.68E-02 |
| 43 | GO:0009522: photosystem I | 2.90E-02 |