Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G02130

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042821: pyridoxal biosynthetic process0.00E+00
2GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
3GO:0097164: ammonium ion metabolic process0.00E+00
4GO:0006223: uracil salvage0.00E+00
5GO:0042820: vitamin B6 catabolic process0.00E+00
6GO:0006399: tRNA metabolic process0.00E+00
7GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
8GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway0.00E+00
9GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
10GO:0032544: plastid translation3.14E-12
11GO:0006412: translation1.28E-11
12GO:0015995: chlorophyll biosynthetic process4.73E-11
13GO:0042254: ribosome biogenesis9.36E-11
14GO:0009658: chloroplast organization3.11E-08
15GO:0010027: thylakoid membrane organization1.67E-06
16GO:0043039: tRNA aminoacylation3.13E-06
17GO:0006782: protoporphyrinogen IX biosynthetic process1.98E-05
18GO:0009735: response to cytokinin2.62E-05
19GO:0016120: carotene biosynthetic process7.32E-05
20GO:0016123: xanthophyll biosynthetic process7.32E-05
21GO:0006655: phosphatidylglycerol biosynthetic process1.07E-04
22GO:0042372: phylloquinone biosynthetic process1.47E-04
23GO:1901259: chloroplast rRNA processing1.47E-04
24GO:0016117: carotenoid biosynthetic process1.79E-04
25GO:0042255: ribosome assembly2.45E-04
26GO:0006353: DNA-templated transcription, termination2.45E-04
27GO:0048564: photosystem I assembly2.45E-04
28GO:0009443: pyridoxal 5'-phosphate salvage2.60E-04
29GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process2.60E-04
30GO:1904966: positive regulation of vitamin E biosynthetic process2.60E-04
31GO:1904964: positive regulation of phytol biosynthetic process2.60E-04
32GO:0042371: vitamin K biosynthetic process2.60E-04
33GO:0034337: RNA folding2.60E-04
34GO:0006434: seryl-tRNA aminoacylation2.60E-04
35GO:0032502: developmental process3.24E-04
36GO:0006783: heme biosynthetic process3.65E-04
37GO:1902326: positive regulation of chlorophyll biosynthetic process5.74E-04
38GO:0070981: L-asparagine biosynthetic process5.74E-04
39GO:0080183: response to photooxidative stress5.74E-04
40GO:0006529: asparagine biosynthetic process5.74E-04
41GO:0008616: queuosine biosynthetic process5.74E-04
42GO:0006729: tetrahydrobiopterin biosynthetic process5.74E-04
43GO:0006568: tryptophan metabolic process5.74E-04
44GO:0010275: NAD(P)H dehydrogenase complex assembly5.74E-04
45GO:0016024: CDP-diacylglycerol biosynthetic process6.67E-04
46GO:0045037: protein import into chloroplast stroma6.67E-04
47GO:0015979: photosynthesis7.69E-04
48GO:0010207: photosystem II assembly8.52E-04
49GO:0006633: fatty acid biosynthetic process9.24E-04
50GO:0015675: nickel cation transport9.31E-04
51GO:0090391: granum assembly9.31E-04
52GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition9.31E-04
53GO:0006518: peptide metabolic process9.31E-04
54GO:0051604: protein maturation9.31E-04
55GO:0006760: folic acid-containing compound metabolic process9.31E-04
56GO:0019344: cysteine biosynthetic process1.17E-03
57GO:0006165: nucleoside diphosphate phosphorylation1.33E-03
58GO:0006228: UTP biosynthetic process1.33E-03
59GO:0009052: pentose-phosphate shunt, non-oxidative branch1.33E-03
60GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.33E-03
61GO:2001141: regulation of RNA biosynthetic process1.33E-03
62GO:0006241: CTP biosynthetic process1.33E-03
63GO:0030007: cellular potassium ion homeostasis1.78E-03
64GO:0044206: UMP salvage1.78E-03
65GO:0046656: folic acid biosynthetic process1.78E-03
66GO:0009765: photosynthesis, light harvesting1.78E-03
67GO:0006183: GTP biosynthetic process1.78E-03
68GO:0008033: tRNA processing2.13E-03
69GO:0000413: protein peptidyl-prolyl isomerization2.13E-03
70GO:0043097: pyrimidine nucleoside salvage2.27E-03
71GO:0010236: plastoquinone biosynthetic process2.27E-03
72GO:0045038: protein import into chloroplast thylakoid membrane2.27E-03
73GO:0006206: pyrimidine nucleobase metabolic process2.80E-03
74GO:0032973: amino acid export2.80E-03
75GO:0010190: cytochrome b6f complex assembly2.80E-03
76GO:0046654: tetrahydrofolate biosynthetic process3.36E-03
77GO:0010019: chloroplast-nucleus signaling pathway3.36E-03
78GO:0010555: response to mannitol3.36E-03
79GO:0009955: adaxial/abaxial pattern specification3.36E-03
80GO:0045454: cell redox homeostasis3.76E-03
81GO:0010196: nonphotochemical quenching3.97E-03
82GO:0006826: iron ion transport3.97E-03
83GO:0006400: tRNA modification3.97E-03
84GO:0006401: RNA catabolic process3.97E-03
85GO:0009772: photosynthetic electron transport in photosystem II3.97E-03
86GO:0043090: amino acid import3.97E-03
87GO:0006614: SRP-dependent cotranslational protein targeting to membrane3.97E-03
88GO:0009642: response to light intensity4.60E-03
89GO:0006402: mRNA catabolic process4.60E-03
90GO:0006875: cellular metal ion homeostasis4.60E-03
91GO:0006605: protein targeting4.60E-03
92GO:0009657: plastid organization5.27E-03
93GO:0017004: cytochrome complex assembly5.27E-03
94GO:0071482: cellular response to light stimulus5.27E-03
95GO:0080144: amino acid homeostasis5.98E-03
96GO:0034765: regulation of ion transmembrane transport5.98E-03
97GO:0031425: chloroplast RNA processing6.71E-03
98GO:0006779: porphyrin-containing compound biosynthetic process6.71E-03
99GO:0006535: cysteine biosynthetic process from serine7.47E-03
100GO:0006839: mitochondrial transport7.69E-03
101GO:0009773: photosynthetic electron transport in photosystem I8.27E-03
102GO:0019684: photosynthesis, light reaction8.27E-03
103GO:0006415: translational termination8.27E-03
104GO:0009073: aromatic amino acid family biosynthetic process8.27E-03
105GO:0006352: DNA-templated transcription, initiation8.27E-03
106GO:0010628: positive regulation of gene expression9.94E-03
107GO:0009767: photosynthetic electron transport chain9.94E-03
108GO:0006541: glutamine metabolic process1.08E-02
109GO:0042538: hyperosmotic salinity response1.09E-02
110GO:0010167: response to nitrate1.17E-02
111GO:0010039: response to iron ion1.17E-02
112GO:0000027: ribosomal large subunit assembly1.36E-02
113GO:0009116: nucleoside metabolic process1.36E-02
114GO:0006418: tRNA aminoacylation for protein translation1.46E-02
115GO:0051260: protein homooligomerization1.56E-02
116GO:0061077: chaperone-mediated protein folding1.56E-02
117GO:0007005: mitochondrion organization1.67E-02
118GO:0009411: response to UV1.77E-02
119GO:0019722: calcium-mediated signaling1.88E-02
120GO:0009306: protein secretion1.88E-02
121GO:0009741: response to brassinosteroid2.22E-02
122GO:0009646: response to absence of light2.34E-02
123GO:0008152: metabolic process2.41E-02
124GO:0009790: embryo development2.46E-02
125GO:0008654: phospholipid biosynthetic process2.46E-02
126GO:0016036: cellular response to phosphate starvation2.71E-02
127GO:1901657: glycosyl compound metabolic process2.83E-02
128GO:0009567: double fertilization forming a zygote and endosperm2.96E-02
129GO:0071805: potassium ion transmembrane transport3.09E-02
130GO:0007267: cell-cell signaling3.09E-02
131GO:0010286: heat acclimation3.09E-02
132GO:0008380: RNA splicing3.46E-02
133GO:0010029: regulation of seed germination3.49E-02
134GO:0042742: defense response to bacterium3.52E-02
135GO:0009627: systemic acquired resistance3.63E-02
136GO:0042128: nitrate assimilation3.63E-02
137GO:0016311: dephosphorylation3.91E-02
138GO:0048481: plant ovule development4.05E-02
139GO:0018298: protein-chromophore linkage4.05E-02
140GO:0009817: defense response to fungus, incompatible interaction4.05E-02
141GO:0010119: regulation of stomatal movement4.49E-02
142GO:0009793: embryo development ending in seed dormancy4.63E-02
143GO:0016051: carbohydrate biosynthetic process4.79E-02
144GO:0009637: response to blue light4.79E-02
RankGO TermAdjusted P value
1GO:0015269: calcium-activated potassium channel activity0.00E+00
2GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding0.00E+00
3GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
4GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
5GO:0045435: lycopene epsilon cyclase activity0.00E+00
6GO:0004853: uroporphyrinogen decarboxylase activity0.00E+00
7GO:0048307: ferredoxin-nitrite reductase activity0.00E+00
8GO:0050421: nitrite reductase (NO-forming) activity0.00E+00
9GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
10GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity0.00E+00
11GO:0046408: chlorophyll synthetase activity0.00E+00
12GO:0005048: signal sequence binding0.00E+00
13GO:0047889: ferredoxin-nitrate reductase activity0.00E+00
14GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
15GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
16GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
17GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
18GO:0019843: rRNA binding5.53E-19
19GO:0003735: structural constituent of ribosome1.42E-14
20GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.76E-05
21GO:0016851: magnesium chelatase activity2.55E-05
22GO:0051920: peroxiredoxin activity1.47E-04
23GO:0004033: aldo-keto reductase (NADP) activity2.45E-04
24GO:0016209: antioxidant activity2.45E-04
25GO:0004831: tyrosine-tRNA ligase activity2.60E-04
26GO:0004071: aspartate-ammonia ligase activity2.60E-04
27GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity2.60E-04
28GO:0009374: biotin binding2.60E-04
29GO:0015088: copper uptake transmembrane transporter activity2.60E-04
30GO:0004654: polyribonucleotide nucleotidyltransferase activity2.60E-04
31GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity2.60E-04
32GO:0030794: (S)-coclaurine-N-methyltransferase activity2.60E-04
33GO:0004425: indole-3-glycerol-phosphate synthase activity2.60E-04
34GO:0004560: alpha-L-fucosidase activity2.60E-04
35GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity2.60E-04
36GO:0004828: serine-tRNA ligase activity2.60E-04
37GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity5.74E-04
38GO:0004150: dihydroneopterin aldolase activity5.74E-04
39GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity5.74E-04
40GO:0015099: nickel cation transmembrane transporter activity5.74E-04
41GO:0102083: 7,8-dihydromonapterin aldolase activity5.74E-04
42GO:0008479: queuine tRNA-ribosyltransferase activity5.74E-04
43GO:0004148: dihydrolipoyl dehydrogenase activity9.31E-04
44GO:0004751: ribose-5-phosphate isomerase activity9.31E-04
45GO:0070402: NADPH binding9.31E-04
46GO:0005528: FK506 binding1.17E-03
47GO:0016149: translation release factor activity, codon specific1.33E-03
48GO:0004550: nucleoside diphosphate kinase activity1.33E-03
49GO:0008097: 5S rRNA binding1.33E-03
50GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.33E-03
51GO:0043495: protein anchor1.78E-03
52GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity1.78E-03
53GO:0004659: prenyltransferase activity1.78E-03
54GO:0001053: plastid sigma factor activity1.78E-03
55GO:0004845: uracil phosphoribosyltransferase activity1.78E-03
56GO:0016987: sigma factor activity1.78E-03
57GO:0003727: single-stranded RNA binding1.82E-03
58GO:0004040: amidase activity2.27E-03
59GO:0003989: acetyl-CoA carboxylase activity2.27E-03
60GO:0016208: AMP binding2.80E-03
61GO:0015271: outward rectifier potassium channel activity2.80E-03
62GO:0004605: phosphatidate cytidylyltransferase activity2.80E-03
63GO:0003723: RNA binding2.85E-03
64GO:0004849: uridine kinase activity3.36E-03
65GO:0004124: cysteine synthase activity3.36E-03
66GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity3.36E-03
67GO:0019899: enzyme binding3.97E-03
68GO:0008312: 7S RNA binding4.60E-03
69GO:0005267: potassium channel activity5.27E-03
70GO:0003747: translation release factor activity5.98E-03
71GO:0005381: iron ion transmembrane transporter activity6.71E-03
72GO:0015020: glucuronosyltransferase activity7.47E-03
73GO:0051539: 4 iron, 4 sulfur cluster binding7.69E-03
74GO:0008794: arsenate reductase (glutaredoxin) activity8.27E-03
75GO:0031072: heat shock protein binding9.94E-03
76GO:0000175: 3'-5'-exoribonuclease activity9.94E-03
77GO:0003690: double-stranded DNA binding1.22E-02
78GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.27E-02
79GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.27E-02
80GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.27E-02
81GO:0005216: ion channel activity1.46E-02
82GO:0016740: transferase activity1.67E-02
83GO:0022891: substrate-specific transmembrane transporter activity1.77E-02
84GO:0016491: oxidoreductase activity1.81E-02
85GO:0004812: aminoacyl-tRNA ligase activity1.99E-02
86GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.16E-02
87GO:0009055: electron carrier activity2.33E-02
88GO:0030170: pyridoxal phosphate binding2.33E-02
89GO:0010181: FMN binding2.34E-02
90GO:0008483: transaminase activity3.09E-02
91GO:0005509: calcium ion binding3.13E-02
92GO:0016168: chlorophyll binding3.49E-02
93GO:0008375: acetylglucosaminyltransferase activity3.63E-02
94GO:0102483: scopolin beta-glucosidase activity3.77E-02
95GO:0008236: serine-type peptidase activity3.91E-02
96GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.05E-02
97GO:0008168: methyltransferase activity4.31E-02
98GO:0004222: metalloendopeptidase activity4.34E-02
99GO:0004601: peroxidase activity4.48E-02
100GO:0016788: hydrolase activity, acting on ester bonds4.56E-02
101GO:0003993: acid phosphatase activity4.94E-02
RankGO TermAdjusted P value
1GO:0044391: ribosomal subunit0.00E+00
2GO:0009507: chloroplast8.76E-74
3GO:0009570: chloroplast stroma2.04E-48
4GO:0009941: chloroplast envelope6.28E-41
5GO:0009535: chloroplast thylakoid membrane4.84E-27
6GO:0009579: thylakoid6.52E-24
7GO:0005840: ribosome2.89E-17
8GO:0009543: chloroplast thylakoid lumen3.69E-14
9GO:0031977: thylakoid lumen4.38E-10
10GO:0009654: photosystem II oxygen evolving complex6.12E-08
11GO:0009534: chloroplast thylakoid1.14E-07
12GO:0009536: plastid5.03E-07
13GO:0031969: chloroplast membrane1.14E-06
14GO:0019898: extrinsic component of membrane1.59E-05
15GO:0009515: granal stacked thylakoid2.60E-04
16GO:0009344: nitrite reductase complex [NAD(P)H]2.60E-04
17GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex2.60E-04
18GO:0048046: apoplast2.88E-04
19GO:0009706: chloroplast inner membrane4.64E-04
20GO:0080085: signal recognition particle, chloroplast targeting5.74E-04
21GO:0000311: plastid large ribosomal subunit6.67E-04
22GO:0015934: large ribosomal subunit8.10E-04
23GO:0030095: chloroplast photosystem II8.52E-04
24GO:0009509: chromoplast9.31E-04
25GO:0009317: acetyl-CoA carboxylase complex9.31E-04
26GO:0010007: magnesium chelatase complex9.31E-04
27GO:0042651: thylakoid membrane1.28E-03
28GO:0015935: small ribosomal subunit1.41E-03
29GO:0009526: plastid envelope1.78E-03
30GO:0031897: Tic complex1.78E-03
31GO:0055035: plastid thylakoid membrane2.27E-03
32GO:0022626: cytosolic ribosome3.05E-03
33GO:0009533: chloroplast stromal thylakoid3.97E-03
34GO:0009539: photosystem II reaction center5.27E-03
35GO:0005786: signal recognition particle, endoplasmic reticulum targeting5.27E-03
36GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)5.98E-03
37GO:0005763: mitochondrial small ribosomal subunit5.98E-03
38GO:0032040: small-subunit processome9.09E-03
39GO:0009508: plastid chromosome9.94E-03
40GO:0022625: cytosolic large ribosomal subunit1.39E-02
41GO:0009523: photosystem II2.46E-02
42GO:0009295: nucleoid3.09E-02
43GO:0005778: peroxisomal membrane3.09E-02
44GO:0010319: stromule3.09E-02
45GO:0046658: anchored component of plasma membrane3.84E-02
46GO:0009707: chloroplast outer membrane4.05E-02
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Gene type



Gene DE type