GO Enrichment Analysis of Co-expressed Genes with
AT2G02130
Rank | GO Term | Adjusted P value |
---|---|---|
1 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
2 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
3 | GO:0097164: ammonium ion metabolic process | 0.00E+00 |
4 | GO:0006223: uracil salvage | 0.00E+00 |
5 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
6 | GO:0006399: tRNA metabolic process | 0.00E+00 |
7 | GO:0006437: tyrosyl-tRNA aminoacylation | 0.00E+00 |
8 | GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 0.00E+00 |
9 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
10 | GO:0032544: plastid translation | 3.14E-12 |
11 | GO:0006412: translation | 1.28E-11 |
12 | GO:0015995: chlorophyll biosynthetic process | 4.73E-11 |
13 | GO:0042254: ribosome biogenesis | 9.36E-11 |
14 | GO:0009658: chloroplast organization | 3.11E-08 |
15 | GO:0010027: thylakoid membrane organization | 1.67E-06 |
16 | GO:0043039: tRNA aminoacylation | 3.13E-06 |
17 | GO:0006782: protoporphyrinogen IX biosynthetic process | 1.98E-05 |
18 | GO:0009735: response to cytokinin | 2.62E-05 |
19 | GO:0016120: carotene biosynthetic process | 7.32E-05 |
20 | GO:0016123: xanthophyll biosynthetic process | 7.32E-05 |
21 | GO:0006655: phosphatidylglycerol biosynthetic process | 1.07E-04 |
22 | GO:0042372: phylloquinone biosynthetic process | 1.47E-04 |
23 | GO:1901259: chloroplast rRNA processing | 1.47E-04 |
24 | GO:0016117: carotenoid biosynthetic process | 1.79E-04 |
25 | GO:0042255: ribosome assembly | 2.45E-04 |
26 | GO:0006353: DNA-templated transcription, termination | 2.45E-04 |
27 | GO:0048564: photosystem I assembly | 2.45E-04 |
28 | GO:0009443: pyridoxal 5'-phosphate salvage | 2.60E-04 |
29 | GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process | 2.60E-04 |
30 | GO:1904966: positive regulation of vitamin E biosynthetic process | 2.60E-04 |
31 | GO:1904964: positive regulation of phytol biosynthetic process | 2.60E-04 |
32 | GO:0042371: vitamin K biosynthetic process | 2.60E-04 |
33 | GO:0034337: RNA folding | 2.60E-04 |
34 | GO:0006434: seryl-tRNA aminoacylation | 2.60E-04 |
35 | GO:0032502: developmental process | 3.24E-04 |
36 | GO:0006783: heme biosynthetic process | 3.65E-04 |
37 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 5.74E-04 |
38 | GO:0070981: L-asparagine biosynthetic process | 5.74E-04 |
39 | GO:0080183: response to photooxidative stress | 5.74E-04 |
40 | GO:0006529: asparagine biosynthetic process | 5.74E-04 |
41 | GO:0008616: queuosine biosynthetic process | 5.74E-04 |
42 | GO:0006729: tetrahydrobiopterin biosynthetic process | 5.74E-04 |
43 | GO:0006568: tryptophan metabolic process | 5.74E-04 |
44 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 5.74E-04 |
45 | GO:0016024: CDP-diacylglycerol biosynthetic process | 6.67E-04 |
46 | GO:0045037: protein import into chloroplast stroma | 6.67E-04 |
47 | GO:0015979: photosynthesis | 7.69E-04 |
48 | GO:0010207: photosystem II assembly | 8.52E-04 |
49 | GO:0006633: fatty acid biosynthetic process | 9.24E-04 |
50 | GO:0015675: nickel cation transport | 9.31E-04 |
51 | GO:0090391: granum assembly | 9.31E-04 |
52 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 9.31E-04 |
53 | GO:0006518: peptide metabolic process | 9.31E-04 |
54 | GO:0051604: protein maturation | 9.31E-04 |
55 | GO:0006760: folic acid-containing compound metabolic process | 9.31E-04 |
56 | GO:0019344: cysteine biosynthetic process | 1.17E-03 |
57 | GO:0006165: nucleoside diphosphate phosphorylation | 1.33E-03 |
58 | GO:0006228: UTP biosynthetic process | 1.33E-03 |
59 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 1.33E-03 |
60 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 1.33E-03 |
61 | GO:2001141: regulation of RNA biosynthetic process | 1.33E-03 |
62 | GO:0006241: CTP biosynthetic process | 1.33E-03 |
63 | GO:0030007: cellular potassium ion homeostasis | 1.78E-03 |
64 | GO:0044206: UMP salvage | 1.78E-03 |
65 | GO:0046656: folic acid biosynthetic process | 1.78E-03 |
66 | GO:0009765: photosynthesis, light harvesting | 1.78E-03 |
67 | GO:0006183: GTP biosynthetic process | 1.78E-03 |
68 | GO:0008033: tRNA processing | 2.13E-03 |
69 | GO:0000413: protein peptidyl-prolyl isomerization | 2.13E-03 |
70 | GO:0043097: pyrimidine nucleoside salvage | 2.27E-03 |
71 | GO:0010236: plastoquinone biosynthetic process | 2.27E-03 |
72 | GO:0045038: protein import into chloroplast thylakoid membrane | 2.27E-03 |
73 | GO:0006206: pyrimidine nucleobase metabolic process | 2.80E-03 |
74 | GO:0032973: amino acid export | 2.80E-03 |
75 | GO:0010190: cytochrome b6f complex assembly | 2.80E-03 |
76 | GO:0046654: tetrahydrofolate biosynthetic process | 3.36E-03 |
77 | GO:0010019: chloroplast-nucleus signaling pathway | 3.36E-03 |
78 | GO:0010555: response to mannitol | 3.36E-03 |
79 | GO:0009955: adaxial/abaxial pattern specification | 3.36E-03 |
80 | GO:0045454: cell redox homeostasis | 3.76E-03 |
81 | GO:0010196: nonphotochemical quenching | 3.97E-03 |
82 | GO:0006826: iron ion transport | 3.97E-03 |
83 | GO:0006400: tRNA modification | 3.97E-03 |
84 | GO:0006401: RNA catabolic process | 3.97E-03 |
85 | GO:0009772: photosynthetic electron transport in photosystem II | 3.97E-03 |
86 | GO:0043090: amino acid import | 3.97E-03 |
87 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 3.97E-03 |
88 | GO:0009642: response to light intensity | 4.60E-03 |
89 | GO:0006402: mRNA catabolic process | 4.60E-03 |
90 | GO:0006875: cellular metal ion homeostasis | 4.60E-03 |
91 | GO:0006605: protein targeting | 4.60E-03 |
92 | GO:0009657: plastid organization | 5.27E-03 |
93 | GO:0017004: cytochrome complex assembly | 5.27E-03 |
94 | GO:0071482: cellular response to light stimulus | 5.27E-03 |
95 | GO:0080144: amino acid homeostasis | 5.98E-03 |
96 | GO:0034765: regulation of ion transmembrane transport | 5.98E-03 |
97 | GO:0031425: chloroplast RNA processing | 6.71E-03 |
98 | GO:0006779: porphyrin-containing compound biosynthetic process | 6.71E-03 |
99 | GO:0006535: cysteine biosynthetic process from serine | 7.47E-03 |
100 | GO:0006839: mitochondrial transport | 7.69E-03 |
101 | GO:0009773: photosynthetic electron transport in photosystem I | 8.27E-03 |
102 | GO:0019684: photosynthesis, light reaction | 8.27E-03 |
103 | GO:0006415: translational termination | 8.27E-03 |
104 | GO:0009073: aromatic amino acid family biosynthetic process | 8.27E-03 |
105 | GO:0006352: DNA-templated transcription, initiation | 8.27E-03 |
106 | GO:0010628: positive regulation of gene expression | 9.94E-03 |
107 | GO:0009767: photosynthetic electron transport chain | 9.94E-03 |
108 | GO:0006541: glutamine metabolic process | 1.08E-02 |
109 | GO:0042538: hyperosmotic salinity response | 1.09E-02 |
110 | GO:0010167: response to nitrate | 1.17E-02 |
111 | GO:0010039: response to iron ion | 1.17E-02 |
112 | GO:0000027: ribosomal large subunit assembly | 1.36E-02 |
113 | GO:0009116: nucleoside metabolic process | 1.36E-02 |
114 | GO:0006418: tRNA aminoacylation for protein translation | 1.46E-02 |
115 | GO:0051260: protein homooligomerization | 1.56E-02 |
116 | GO:0061077: chaperone-mediated protein folding | 1.56E-02 |
117 | GO:0007005: mitochondrion organization | 1.67E-02 |
118 | GO:0009411: response to UV | 1.77E-02 |
119 | GO:0019722: calcium-mediated signaling | 1.88E-02 |
120 | GO:0009306: protein secretion | 1.88E-02 |
121 | GO:0009741: response to brassinosteroid | 2.22E-02 |
122 | GO:0009646: response to absence of light | 2.34E-02 |
123 | GO:0008152: metabolic process | 2.41E-02 |
124 | GO:0009790: embryo development | 2.46E-02 |
125 | GO:0008654: phospholipid biosynthetic process | 2.46E-02 |
126 | GO:0016036: cellular response to phosphate starvation | 2.71E-02 |
127 | GO:1901657: glycosyl compound metabolic process | 2.83E-02 |
128 | GO:0009567: double fertilization forming a zygote and endosperm | 2.96E-02 |
129 | GO:0071805: potassium ion transmembrane transport | 3.09E-02 |
130 | GO:0007267: cell-cell signaling | 3.09E-02 |
131 | GO:0010286: heat acclimation | 3.09E-02 |
132 | GO:0008380: RNA splicing | 3.46E-02 |
133 | GO:0010029: regulation of seed germination | 3.49E-02 |
134 | GO:0042742: defense response to bacterium | 3.52E-02 |
135 | GO:0009627: systemic acquired resistance | 3.63E-02 |
136 | GO:0042128: nitrate assimilation | 3.63E-02 |
137 | GO:0016311: dephosphorylation | 3.91E-02 |
138 | GO:0048481: plant ovule development | 4.05E-02 |
139 | GO:0018298: protein-chromophore linkage | 4.05E-02 |
140 | GO:0009817: defense response to fungus, incompatible interaction | 4.05E-02 |
141 | GO:0010119: regulation of stomatal movement | 4.49E-02 |
142 | GO:0009793: embryo development ending in seed dormancy | 4.63E-02 |
143 | GO:0016051: carbohydrate biosynthetic process | 4.79E-02 |
144 | GO:0009637: response to blue light | 4.79E-02 |
Rank | GO Term | Adjusted P value |
---|---|---|
1 | GO:0015269: calcium-activated potassium channel activity | 0.00E+00 |
2 | GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding | 0.00E+00 |
3 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
4 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
5 | GO:0045435: lycopene epsilon cyclase activity | 0.00E+00 |
6 | GO:0004853: uroporphyrinogen decarboxylase activity | 0.00E+00 |
7 | GO:0048307: ferredoxin-nitrite reductase activity | 0.00E+00 |
8 | GO:0050421: nitrite reductase (NO-forming) activity | 0.00E+00 |
9 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
10 | GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity | 0.00E+00 |
11 | GO:0046408: chlorophyll synthetase activity | 0.00E+00 |
12 | GO:0005048: signal sequence binding | 0.00E+00 |
13 | GO:0047889: ferredoxin-nitrate reductase activity | 0.00E+00 |
14 | GO:0009974: zeinoxanthin epsilon hydroxylase activity | 0.00E+00 |
15 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
16 | GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity | 0.00E+00 |
17 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
18 | GO:0019843: rRNA binding | 5.53E-19 |
19 | GO:0003735: structural constituent of ribosome | 1.42E-14 |
20 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.76E-05 |
21 | GO:0016851: magnesium chelatase activity | 2.55E-05 |
22 | GO:0051920: peroxiredoxin activity | 1.47E-04 |
23 | GO:0004033: aldo-keto reductase (NADP) activity | 2.45E-04 |
24 | GO:0016209: antioxidant activity | 2.45E-04 |
25 | GO:0004831: tyrosine-tRNA ligase activity | 2.60E-04 |
26 | GO:0004071: aspartate-ammonia ligase activity | 2.60E-04 |
27 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 2.60E-04 |
28 | GO:0009374: biotin binding | 2.60E-04 |
29 | GO:0015088: copper uptake transmembrane transporter activity | 2.60E-04 |
30 | GO:0004654: polyribonucleotide nucleotidyltransferase activity | 2.60E-04 |
31 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 2.60E-04 |
32 | GO:0030794: (S)-coclaurine-N-methyltransferase activity | 2.60E-04 |
33 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 2.60E-04 |
34 | GO:0004560: alpha-L-fucosidase activity | 2.60E-04 |
35 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 2.60E-04 |
36 | GO:0004828: serine-tRNA ligase activity | 2.60E-04 |
37 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 5.74E-04 |
38 | GO:0004150: dihydroneopterin aldolase activity | 5.74E-04 |
39 | GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity | 5.74E-04 |
40 | GO:0015099: nickel cation transmembrane transporter activity | 5.74E-04 |
41 | GO:0102083: 7,8-dihydromonapterin aldolase activity | 5.74E-04 |
42 | GO:0008479: queuine tRNA-ribosyltransferase activity | 5.74E-04 |
43 | GO:0004148: dihydrolipoyl dehydrogenase activity | 9.31E-04 |
44 | GO:0004751: ribose-5-phosphate isomerase activity | 9.31E-04 |
45 | GO:0070402: NADPH binding | 9.31E-04 |
46 | GO:0005528: FK506 binding | 1.17E-03 |
47 | GO:0016149: translation release factor activity, codon specific | 1.33E-03 |
48 | GO:0004550: nucleoside diphosphate kinase activity | 1.33E-03 |
49 | GO:0008097: 5S rRNA binding | 1.33E-03 |
50 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 1.33E-03 |
51 | GO:0043495: protein anchor | 1.78E-03 |
52 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 1.78E-03 |
53 | GO:0004659: prenyltransferase activity | 1.78E-03 |
54 | GO:0001053: plastid sigma factor activity | 1.78E-03 |
55 | GO:0004845: uracil phosphoribosyltransferase activity | 1.78E-03 |
56 | GO:0016987: sigma factor activity | 1.78E-03 |
57 | GO:0003727: single-stranded RNA binding | 1.82E-03 |
58 | GO:0004040: amidase activity | 2.27E-03 |
59 | GO:0003989: acetyl-CoA carboxylase activity | 2.27E-03 |
60 | GO:0016208: AMP binding | 2.80E-03 |
61 | GO:0015271: outward rectifier potassium channel activity | 2.80E-03 |
62 | GO:0004605: phosphatidate cytidylyltransferase activity | 2.80E-03 |
63 | GO:0003723: RNA binding | 2.85E-03 |
64 | GO:0004849: uridine kinase activity | 3.36E-03 |
65 | GO:0004124: cysteine synthase activity | 3.36E-03 |
66 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 3.36E-03 |
67 | GO:0019899: enzyme binding | 3.97E-03 |
68 | GO:0008312: 7S RNA binding | 4.60E-03 |
69 | GO:0005267: potassium channel activity | 5.27E-03 |
70 | GO:0003747: translation release factor activity | 5.98E-03 |
71 | GO:0005381: iron ion transmembrane transporter activity | 6.71E-03 |
72 | GO:0015020: glucuronosyltransferase activity | 7.47E-03 |
73 | GO:0051539: 4 iron, 4 sulfur cluster binding | 7.69E-03 |
74 | GO:0008794: arsenate reductase (glutaredoxin) activity | 8.27E-03 |
75 | GO:0031072: heat shock protein binding | 9.94E-03 |
76 | GO:0000175: 3'-5'-exoribonuclease activity | 9.94E-03 |
77 | GO:0003690: double-stranded DNA binding | 1.22E-02 |
78 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 1.27E-02 |
79 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 1.27E-02 |
80 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 1.27E-02 |
81 | GO:0005216: ion channel activity | 1.46E-02 |
82 | GO:0016740: transferase activity | 1.67E-02 |
83 | GO:0022891: substrate-specific transmembrane transporter activity | 1.77E-02 |
84 | GO:0016491: oxidoreductase activity | 1.81E-02 |
85 | GO:0004812: aminoacyl-tRNA ligase activity | 1.99E-02 |
86 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 2.16E-02 |
87 | GO:0009055: electron carrier activity | 2.33E-02 |
88 | GO:0030170: pyridoxal phosphate binding | 2.33E-02 |
89 | GO:0010181: FMN binding | 2.34E-02 |
90 | GO:0008483: transaminase activity | 3.09E-02 |
91 | GO:0005509: calcium ion binding | 3.13E-02 |
92 | GO:0016168: chlorophyll binding | 3.49E-02 |
93 | GO:0008375: acetylglucosaminyltransferase activity | 3.63E-02 |
94 | GO:0102483: scopolin beta-glucosidase activity | 3.77E-02 |
95 | GO:0008236: serine-type peptidase activity | 3.91E-02 |
96 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 4.05E-02 |
97 | GO:0008168: methyltransferase activity | 4.31E-02 |
98 | GO:0004222: metalloendopeptidase activity | 4.34E-02 |
99 | GO:0004601: peroxidase activity | 4.48E-02 |
100 | GO:0016788: hydrolase activity, acting on ester bonds | 4.56E-02 |
101 | GO:0003993: acid phosphatase activity | 4.94E-02 |
Rank | GO Term | Adjusted P value |
---|---|---|
1 | GO:0044391: ribosomal subunit | 0.00E+00 |
2 | GO:0009507: chloroplast | 8.76E-74 |
3 | GO:0009570: chloroplast stroma | 2.04E-48 |
4 | GO:0009941: chloroplast envelope | 6.28E-41 |
5 | GO:0009535: chloroplast thylakoid membrane | 4.84E-27 |
6 | GO:0009579: thylakoid | 6.52E-24 |
7 | GO:0005840: ribosome | 2.89E-17 |
8 | GO:0009543: chloroplast thylakoid lumen | 3.69E-14 |
9 | GO:0031977: thylakoid lumen | 4.38E-10 |
10 | GO:0009654: photosystem II oxygen evolving complex | 6.12E-08 |
11 | GO:0009534: chloroplast thylakoid | 1.14E-07 |
12 | GO:0009536: plastid | 5.03E-07 |
13 | GO:0031969: chloroplast membrane | 1.14E-06 |
14 | GO:0019898: extrinsic component of membrane | 1.59E-05 |
15 | GO:0009515: granal stacked thylakoid | 2.60E-04 |
16 | GO:0009344: nitrite reductase complex [NAD(P)H] | 2.60E-04 |
17 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 2.60E-04 |
18 | GO:0048046: apoplast | 2.88E-04 |
19 | GO:0009706: chloroplast inner membrane | 4.64E-04 |
20 | GO:0080085: signal recognition particle, chloroplast targeting | 5.74E-04 |
21 | GO:0000311: plastid large ribosomal subunit | 6.67E-04 |
22 | GO:0015934: large ribosomal subunit | 8.10E-04 |
23 | GO:0030095: chloroplast photosystem II | 8.52E-04 |
24 | GO:0009509: chromoplast | 9.31E-04 |
25 | GO:0009317: acetyl-CoA carboxylase complex | 9.31E-04 |
26 | GO:0010007: magnesium chelatase complex | 9.31E-04 |
27 | GO:0042651: thylakoid membrane | 1.28E-03 |
28 | GO:0015935: small ribosomal subunit | 1.41E-03 |
29 | GO:0009526: plastid envelope | 1.78E-03 |
30 | GO:0031897: Tic complex | 1.78E-03 |
31 | GO:0055035: plastid thylakoid membrane | 2.27E-03 |
32 | GO:0022626: cytosolic ribosome | 3.05E-03 |
33 | GO:0009533: chloroplast stromal thylakoid | 3.97E-03 |
34 | GO:0009539: photosystem II reaction center | 5.27E-03 |
35 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 5.27E-03 |
36 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 5.98E-03 |
37 | GO:0005763: mitochondrial small ribosomal subunit | 5.98E-03 |
38 | GO:0032040: small-subunit processome | 9.09E-03 |
39 | GO:0009508: plastid chromosome | 9.94E-03 |
40 | GO:0022625: cytosolic large ribosomal subunit | 1.39E-02 |
41 | GO:0009523: photosystem II | 2.46E-02 |
42 | GO:0009295: nucleoid | 3.09E-02 |
43 | GO:0005778: peroxisomal membrane | 3.09E-02 |
44 | GO:0010319: stromule | 3.09E-02 |
45 | GO:0046658: anchored component of plasma membrane | 3.84E-02 |
46 | GO:0009707: chloroplast outer membrane | 4.05E-02 |