co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G01060

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000541: positive regulation of protein geranylgeranylation	0.00E+00
2	GO:0071327: cellular response to trehalose stimulus	0.00E+00
3	GO:1900367: positive regulation of defense response to insect	0.00E+00
4	GO:0006468: protein phosphorylation	1.18E-10
5	GO:0010942: positive regulation of cell death	1.87E-07
6	GO:0010618: aerenchyma formation	7.51E-07
7	GO:0018344: protein geranylgeranylation	2.06E-05
8	GO:0006952: defense response	2.26E-05
9	GO:0007166: cell surface receptor signaling pathway	2.30E-05
10	GO:0010310: regulation of hydrogen peroxide metabolic process	4.39E-05
11	GO:0043562: cellular response to nitrogen levels	9.69E-05
12	GO:0009962: regulation of flavonoid biosynthetic process	1.22E-04
13	GO:0009816: defense response to bacterium, incompatible interaction	1.22E-04
14	GO:1901183: positive regulation of camalexin biosynthetic process	1.22E-04
15	GO:0044376: RNA polymerase II complex import to nucleus	1.22E-04
16	GO:0060862: negative regulation of floral organ abscission	1.22E-04
17	GO:1990022: RNA polymerase III complex localization to nucleus	1.22E-04
18	GO:0009627: systemic acquired resistance	1.32E-04
19	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	1.44E-04
20	GO:0031349: positive regulation of defense response	2.82E-04
21	GO:0019483: beta-alanine biosynthetic process	2.82E-04
22	GO:1902000: homogentisate catabolic process	2.82E-04
23	GO:0071395: cellular response to jasmonic acid stimulus	2.82E-04
24	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	2.82E-04
25	GO:0009838: abscission	2.82E-04
26	GO:0080185: effector dependent induction by symbiont of host immune response	2.82E-04
27	GO:0006212: uracil catabolic process	2.82E-04
28	GO:0007584: response to nutrient	2.82E-04
29	GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway	4.65E-04
30	GO:0055074: calcium ion homeostasis	4.65E-04
31	GO:1900140: regulation of seedling development	4.65E-04
32	GO:0010359: regulation of anion channel activity	4.65E-04
33	GO:0009072: aromatic amino acid family metabolic process	4.65E-04
34	GO:2000022: regulation of jasmonic acid mediated signaling pathway	5.53E-04
35	GO:0009626: plant-type hypersensitive response	6.37E-04
36	GO:0001676: long-chain fatty acid metabolic process	6.66E-04
37	GO:0048194: Golgi vesicle budding	6.66E-04
38	GO:0042631: cellular response to water deprivation	7.61E-04
39	GO:0010107: potassium ion import	8.84E-04
40	GO:0080142: regulation of salicylic acid biosynthetic process	8.84E-04
41	GO:0060548: negative regulation of cell death	8.84E-04
42	GO:0006891: intra-Golgi vesicle-mediated transport	9.99E-04
43	GO:0000304: response to singlet oxygen	1.12E-03
44	GO:0030041: actin filament polymerization	1.12E-03
45	GO:0046283: anthocyanin-containing compound metabolic process	1.12E-03
46	GO:0031365: N-terminal protein amino acid modification	1.12E-03
47	GO:0010225: response to UV-C	1.12E-03
48	GO:1902456: regulation of stomatal opening	1.37E-03
49	GO:0001666: response to hypoxia	1.42E-03
50	GO:0009612: response to mechanical stimulus	1.64E-03
51	GO:0010555: response to mannitol	1.64E-03
52	GO:2000067: regulation of root morphogenesis	1.64E-03
53	GO:0000911: cytokinesis by cell plate formation	1.64E-03
54	GO:0009617: response to bacterium	1.82E-03
55	GO:0010044: response to aluminum ion	1.92E-03
56	GO:0006401: RNA catabolic process	1.92E-03
57	GO:0043090: amino acid import	1.92E-03
58	GO:0071446: cellular response to salicylic acid stimulus	1.92E-03
59	GO:0030162: regulation of proteolysis	2.22E-03
60	GO:0010204: defense response signaling pathway, resistance gene-independent	2.54E-03
61	GO:2000031: regulation of salicylic acid mediated signaling pathway	2.54E-03
62	GO:0007186: G-protein coupled receptor signaling pathway	2.54E-03
63	GO:0015031: protein transport	2.59E-03
64	GO:0035556: intracellular signal transduction	2.61E-03
65	GO:0006631: fatty acid metabolic process	2.76E-03
66	GO:0090305: nucleic acid phosphodiester bond hydrolysis	2.87E-03
67	GO:0051707: response to other organism	2.99E-03
68	GO:1900426: positive regulation of defense response to bacterium	3.21E-03
69	GO:0048268: clathrin coat assembly	3.21E-03
70	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.47E-03
71	GO:0046777: protein autophosphorylation	3.62E-03
72	GO:0009750: response to fructose	3.94E-03
73	GO:0030148: sphingolipid biosynthetic process	3.94E-03
74	GO:0002213: defense response to insect	4.32E-03
75	GO:0010105: negative regulation of ethylene-activated signaling pathway	4.32E-03
76	GO:0006886: intracellular protein transport	4.34E-03
77	GO:0006807: nitrogen compound metabolic process	4.71E-03
78	GO:0070588: calcium ion transmembrane transport	5.54E-03
79	GO:0010053: root epidermal cell differentiation	5.54E-03
80	GO:0042343: indole glucosinolate metabolic process	5.54E-03
81	GO:0010167: response to nitrate	5.54E-03
82	GO:0018105: peptidyl-serine phosphorylation	5.87E-03
83	GO:0009737: response to abscisic acid	6.40E-03
84	GO:0016575: histone deacetylation	6.87E-03
85	GO:0006874: cellular calcium ion homeostasis	6.87E-03
86	GO:0042742: defense response to bacterium	7.01E-03
87	GO:0098542: defense response to other organism	7.34E-03
88	GO:0009814: defense response, incompatible interaction	7.81E-03
89	GO:0031348: negative regulation of defense response	7.81E-03
90	GO:0009625: response to insect	8.30E-03
91	GO:0071215: cellular response to abscisic acid stimulus	8.30E-03
92	GO:0010091: trichome branching	8.80E-03
93	GO:0009306: protein secretion	8.80E-03
94	GO:0042391: regulation of membrane potential	9.83E-03
95	GO:0010118: stomatal movement	9.83E-03
96	GO:0010150: leaf senescence	9.86E-03
97	GO:0071472: cellular response to salt stress	1.04E-02
98	GO:0009738: abscisic acid-activated signaling pathway	1.08E-02
99	GO:0061025: membrane fusion	1.09E-02
100	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.10E-02
101	GO:0009749: response to glucose	1.15E-02
102	GO:0006623: protein targeting to vacuole	1.15E-02
103	GO:0010183: pollen tube guidance	1.15E-02
104	GO:0010193: response to ozone	1.20E-02
105	GO:0000302: response to reactive oxygen species	1.20E-02
106	GO:0007264: small GTPase mediated signal transduction	1.26E-02
107	GO:0006904: vesicle docking involved in exocytosis	1.44E-02
108	GO:0000910: cytokinesis	1.50E-02
109	GO:0048573: photoperiodism, flowering	1.75E-02
110	GO:0016311: dephosphorylation	1.82E-02
111	GO:0008219: cell death	1.88E-02
112	GO:0009817: defense response to fungus, incompatible interaction	1.88E-02
113	GO:0010200: response to chitin	1.97E-02
114	GO:0006499: N-terminal protein myristoylation	2.02E-02
115	GO:0009407: toxin catabolic process	2.02E-02
116	GO:0010119: regulation of stomatal movement	2.09E-02
117	GO:0006865: amino acid transport	2.16E-02
118	GO:0006897: endocytosis	2.52E-02
119	GO:0009744: response to sucrose	2.67E-02
120	GO:0006629: lipid metabolic process	2.81E-02
121	GO:0009644: response to high light intensity	2.82E-02
122	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	3.06E-02
123	GO:0042545: cell wall modification	4.15E-02
124	GO:0009742: brassinosteroid mediated signaling pathway	4.42E-02

Rank	GO Term	Adjusted P value
1	GO:0005092: GDP-dissociation inhibitor activity	0.00E+00
2	GO:0016034: maleylacetoacetate isomerase activity	0.00E+00
3	GO:0003837: beta-ureidopropionase activity	0.00E+00
4	GO:0005524: ATP binding	5.71E-11
5	GO:0004674: protein serine/threonine kinase activity	3.83E-09
6	GO:0004713: protein tyrosine kinase activity	2.80E-08
7	GO:0016301: kinase activity	7.66E-06
8	GO:0102391: decanoate--CoA ligase activity	4.39E-05
9	GO:0004467: long-chain fatty acid-CoA ligase activity	5.92E-05
10	GO:0004714: transmembrane receptor protein tyrosine kinase activity	7.70E-05
11	GO:1901149: salicylic acid binding	1.22E-04
12	GO:0004672: protein kinase activity	2.01E-04
13	GO:0045140: inositol phosphoceramide synthase activity	2.82E-04
14	GO:0004566: beta-glucuronidase activity	2.82E-04
15	GO:0031683: G-protein beta/gamma-subunit complex binding	4.65E-04
16	GO:0004663: Rab geranylgeranyltransferase activity	4.65E-04
17	GO:0001664: G-protein coupled receptor binding	4.65E-04
18	GO:0005093: Rab GDP-dissociation inhibitor activity	4.65E-04
19	GO:0005515: protein binding	4.66E-04
20	GO:0031176: endo-1,4-beta-xylanase activity	6.66E-04
21	GO:0005516: calmodulin binding	1.01E-03
22	GO:0017137: Rab GTPase binding	1.12E-03
23	GO:0008565: protein transporter activity	1.22E-03
24	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.34E-03
25	GO:0005509: calcium ion binding	1.47E-03
26	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.58E-03
27	GO:0004012: phospholipid-translocating ATPase activity	1.64E-03
28	GO:0004683: calmodulin-dependent protein kinase activity	1.67E-03
29	GO:0004806: triglyceride lipase activity	1.67E-03
30	GO:0008235: metalloexopeptidase activity	1.92E-03
31	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.54E-03
32	GO:0005267: potassium channel activity	2.54E-03
33	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	2.54E-03
34	GO:0043531: ADP binding	2.84E-03
35	GO:0045309: protein phosphorylated amino acid binding	3.21E-03
36	GO:0005545: 1-phosphatidylinositol binding	3.57E-03
37	GO:0019904: protein domain specific binding	3.94E-03
38	GO:0004177: aminopeptidase activity	3.94E-03
39	GO:0016298: lipase activity	4.16E-03
40	GO:0004871: signal transducer activity	4.43E-03
41	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	4.71E-03
42	GO:0005262: calcium channel activity	4.71E-03
43	GO:0005388: calcium-transporting ATPase activity	4.71E-03
44	GO:0005217: intracellular ligand-gated ion channel activity	5.54E-03
45	GO:0003712: transcription cofactor activity	5.54E-03
46	GO:0004970: ionotropic glutamate receptor activity	5.54E-03
47	GO:0004190: aspartic-type endopeptidase activity	5.54E-03
48	GO:0030552: cAMP binding	5.54E-03
49	GO:0030553: cGMP binding	5.54E-03
50	GO:0003954: NADH dehydrogenase activity	6.42E-03
51	GO:0004407: histone deacetylase activity	6.42E-03
52	GO:0005216: ion channel activity	6.87E-03
53	GO:0043424: protein histidine kinase binding	6.87E-03
54	GO:0033612: receptor serine/threonine kinase binding	7.34E-03
55	GO:0005249: voltage-gated potassium channel activity	9.83E-03
56	GO:0030551: cyclic nucleotide binding	9.83E-03
57	GO:0030276: clathrin binding	1.04E-02
58	GO:0001085: RNA polymerase II transcription factor binding	1.04E-02
59	GO:0004518: nuclease activity	1.26E-02
60	GO:0016740: transferase activity	1.45E-02
61	GO:0051213: dioxygenase activity	1.56E-02
62	GO:0030246: carbohydrate binding	1.64E-02
63	GO:0030247: polysaccharide binding	1.75E-02
64	GO:0005096: GTPase activator activity	1.95E-02
65	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	2.09E-02
66	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.23E-02
67	GO:0003993: acid phosphatase activity	2.30E-02
68	GO:0004722: protein serine/threonine phosphatase activity	2.50E-02
69	GO:0004364: glutathione transferase activity	2.59E-02
70	GO:0005484: SNAP receptor activity	2.67E-02
71	GO:0003924: GTPase activity	2.81E-02
72	GO:0015293: symporter activity	2.90E-02
73	GO:0015171: amino acid transmembrane transporter activity	3.55E-02
74	GO:0031625: ubiquitin protein ligase binding	3.55E-02
75	GO:0045330: aspartyl esterase activity	3.55E-02
76	GO:0030599: pectinesterase activity	4.06E-02
77	GO:0003779: actin binding	4.15E-02
78	GO:0051082: unfolded protein binding	4.24E-02
79	GO:0016887: ATPase activity	4.33E-02
80	GO:0008026: ATP-dependent helicase activity	4.42E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	2.46E-11
2	GO:0005968: Rab-protein geranylgeranyltransferase complex	6.65E-06
3	GO:0005911: cell-cell junction	1.22E-04
4	GO:0031304: intrinsic component of mitochondrial inner membrane	2.82E-04
5	GO:0005795: Golgi stack	3.37E-04
6	GO:0000164: protein phosphatase type 1 complex	1.12E-03
7	GO:0016021: integral component of membrane	1.52E-03
8	GO:0030665: clathrin-coated vesicle membrane	3.21E-03
9	GO:0017119: Golgi transport complex	3.57E-03
10	GO:0005765: lysosomal membrane	3.94E-03
11	GO:0016602: CCAAT-binding factor complex	4.71E-03
12	GO:0005905: clathrin-coated pit	7.34E-03
13	GO:0005887: integral component of plasma membrane	8.02E-03
14	GO:0030136: clathrin-coated vesicle	9.31E-03
15	GO:0009504: cell plate	1.15E-02
16	GO:0019898: extrinsic component of membrane	1.15E-02
17	GO:0071944: cell periphery	1.32E-02
18	GO:0005777: peroxisome	1.34E-02
19	GO:0005788: endoplasmic reticulum lumen	1.62E-02
20	GO:0005667: transcription factor complex	1.69E-02
21	GO:0005829: cytosol	1.79E-02
22	GO:0019005: SCF ubiquitin ligase complex	1.88E-02
23	GO:0031902: late endosome membrane	2.52E-02
24	GO:0090406: pollen tube	2.67E-02
25	GO:0005856: cytoskeleton	2.90E-02
26	GO:0031966: mitochondrial membrane	3.14E-02
27	GO:0005635: nuclear envelope	3.46E-02
28	GO:0005834: heterotrimeric G-protein complex	3.89E-02
29	GO:0009706: chloroplast inner membrane	4.24E-02
30	GO:0005794: Golgi apparatus	4.55E-02