co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G77920

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010398: xylogalacturonan metabolic process	0.00E+00
2	GO:0033539: fatty acid beta-oxidation using acyl-CoA dehydrogenase	0.00E+00
3	GO:0031990: mRNA export from nucleus in response to heat stress	0.00E+00
4	GO:0046292: formaldehyde metabolic process	0.00E+00
5	GO:0006069: ethanol oxidation	0.00E+00
6	GO:0006090: pyruvate metabolic process	9.69E-06
7	GO:0055114: oxidation-reduction process	2.64E-05
8	GO:0009051: pentose-phosphate shunt, oxidative branch	6.04E-05
9	GO:0006772: thiamine metabolic process	7.75E-05
10	GO:0035266: meristem growth	7.75E-05
11	GO:0007292: female gamete generation	7.75E-05
12	GO:0006805: xenobiotic metabolic process	7.75E-05
13	GO:0080173: male-female gamete recognition during double fertilization	7.75E-05
14	GO:0010184: cytokinin transport	7.75E-05
15	GO:0034402: recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex	7.75E-05
16	GO:0043069: negative regulation of programmed cell death	8.82E-05
17	GO:0090351: seedling development	1.81E-04
18	GO:0019441: tryptophan catabolic process to kynurenine	1.85E-04
19	GO:1905182: positive regulation of urease activity	1.85E-04
20	GO:0051262: protein tetramerization	1.85E-04
21	GO:0019521: D-gluconate metabolic process	1.85E-04
22	GO:0009812: flavonoid metabolic process	1.85E-04
23	GO:0051788: response to misfolded protein	1.85E-04
24	GO:0045948: positive regulation of translational initiation	1.85E-04
25	GO:0006101: citrate metabolic process	1.85E-04
26	GO:0045793: positive regulation of cell size	3.11E-04
27	GO:0060968: regulation of gene silencing	3.11E-04
28	GO:0000288: nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	3.11E-04
29	GO:0032877: positive regulation of DNA endoreduplication	4.49E-04
30	GO:0006624: vacuolar protein processing	4.49E-04
31	GO:0007231: osmosensory signaling pathway	4.49E-04
32	GO:0046653: tetrahydrofolate metabolic process	4.49E-04
33	GO:0072334: UDP-galactose transmembrane transport	4.49E-04
34	GO:0019252: starch biosynthetic process	5.25E-04
35	GO:0010222: stem vascular tissue pattern formation	5.98E-04
36	GO:0051781: positive regulation of cell division	5.98E-04
37	GO:1902584: positive regulation of response to water deprivation	5.98E-04
38	GO:0015846: polyamine transport	5.98E-04
39	GO:0033500: carbohydrate homeostasis	5.98E-04
40	GO:0010150: leaf senescence	6.88E-04
41	GO:0006097: glyoxylate cycle	7.57E-04
42	GO:0009229: thiamine diphosphate biosynthetic process	7.57E-04
43	GO:0045927: positive regulation of growth	7.57E-04
44	GO:0006564: L-serine biosynthetic process	7.57E-04
45	GO:0006014: D-ribose metabolic process	9.24E-04
46	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	9.24E-04
47	GO:0006751: glutathione catabolic process	9.24E-04
48	GO:0048827: phyllome development	9.24E-04
49	GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation	9.24E-04
50	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	9.24E-04
51	GO:0048232: male gamete generation	9.24E-04
52	GO:0043248: proteasome assembly	9.24E-04
53	GO:0035435: phosphate ion transmembrane transport	9.24E-04
54	GO:0009099: valine biosynthetic process	1.10E-03
55	GO:0010189: vitamin E biosynthetic process	1.10E-03
56	GO:0015977: carbon fixation	1.10E-03
57	GO:0034389: lipid particle organization	1.10E-03
58	GO:0009082: branched-chain amino acid biosynthetic process	1.10E-03
59	GO:0006694: steroid biosynthetic process	1.10E-03
60	GO:0098655: cation transmembrane transport	1.10E-03
61	GO:0006499: N-terminal protein myristoylation	1.13E-03
62	GO:0050790: regulation of catalytic activity	1.29E-03
63	GO:0009853: photorespiration	1.29E-03
64	GO:0080186: developmental vegetative growth	1.29E-03
65	GO:0071669: plant-type cell wall organization or biogenesis	1.29E-03
66	GO:0009396: folic acid-containing compound biosynthetic process	1.29E-03
67	GO:0006099: tricarboxylic acid cycle	1.35E-03
68	GO:0006102: isocitrate metabolic process	1.48E-03
69	GO:0005978: glycogen biosynthetic process	1.48E-03
70	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	1.48E-03
71	GO:0010078: maintenance of root meristem identity	1.48E-03
72	GO:0044030: regulation of DNA methylation	1.69E-03
73	GO:0006367: transcription initiation from RNA polymerase II promoter	1.69E-03
74	GO:0009097: isoleucine biosynthetic process	1.69E-03
75	GO:0006098: pentose-phosphate shunt	1.91E-03
76	GO:0009821: alkaloid biosynthetic process	1.91E-03
77	GO:0046916: cellular transition metal ion homeostasis	1.91E-03
78	GO:0071577: zinc II ion transmembrane transport	2.14E-03
79	GO:0035999: tetrahydrofolate interconversion	2.14E-03
80	GO:0009098: leucine biosynthetic process	2.14E-03
81	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	2.14E-03
82	GO:0051603: proteolysis involved in cellular protein catabolic process	2.28E-03
83	GO:0048829: root cap development	2.37E-03
84	GO:0009299: mRNA transcription	2.37E-03
85	GO:0000103: sulfate assimilation	2.37E-03
86	GO:0010015: root morphogenesis	2.61E-03
87	GO:0072593: reactive oxygen species metabolic process	2.61E-03
88	GO:0043085: positive regulation of catalytic activity	2.61E-03
89	GO:0006979: response to oxidative stress	2.80E-03
90	GO:0006108: malate metabolic process	3.12E-03
91	GO:0006006: glucose metabolic process	3.12E-03
92	GO:0006807: nitrogen compound metabolic process	3.12E-03
93	GO:0009933: meristem structural organization	3.38E-03
94	GO:0009901: anther dehiscence	3.66E-03
95	GO:0006863: purine nucleobase transport	3.94E-03
96	GO:0006071: glycerol metabolic process	3.94E-03
97	GO:0034976: response to endoplasmic reticulum stress	3.94E-03
98	GO:0006508: proteolysis	4.13E-03
99	GO:0006825: copper ion transport	4.52E-03
100	GO:0051260: protein homooligomerization	4.82E-03
101	GO:0006366: transcription from RNA polymerase II promoter	4.82E-03
102	GO:0006730: one-carbon metabolic process	5.13E-03
103	GO:0030433: ubiquitin-dependent ERAD pathway	5.13E-03
104	GO:0009555: pollen development	5.19E-03
105	GO:0009611: response to wounding	5.34E-03
106	GO:0046686: response to cadmium ion	5.42E-03
107	GO:0034220: ion transmembrane transport	6.44E-03
108	GO:0045489: pectin biosynthetic process	6.78E-03
109	GO:0006662: glycerol ether metabolic process	6.78E-03
110	GO:0010183: pollen tube guidance	7.49E-03
111	GO:0010286: heat acclimation	9.36E-03
112	GO:0009723: response to ethylene	9.61E-03
113	GO:0000910: cytokinesis	9.75E-03
114	GO:0009615: response to virus	1.02E-02
115	GO:0001666: response to hypoxia	1.02E-02
116	GO:0015979: photosynthesis	1.18E-02
117	GO:0008219: cell death	1.22E-02
118	GO:0045454: cell redox homeostasis	1.23E-02
119	GO:0010311: lateral root formation	1.27E-02
120	GO:0045087: innate immune response	1.45E-02
121	GO:0032259: methylation	1.46E-02
122	GO:0034599: cellular response to oxidative stress	1.49E-02
123	GO:0009751: response to salicylic acid	1.50E-02
124	GO:0009408: response to heat	1.52E-02
125	GO:0030001: metal ion transport	1.59E-02
126	GO:0009753: response to jasmonic acid	1.64E-02
127	GO:0009651: response to salt stress	1.72E-02
128	GO:0009636: response to toxic substance	1.88E-02
129	GO:0009965: leaf morphogenesis	1.88E-02
130	GO:0006812: cation transport	2.04E-02
131	GO:0048367: shoot system development	2.47E-02
132	GO:0048316: seed development	2.47E-02
133	GO:0009626: plant-type hypersensitive response	2.52E-02
134	GO:0009620: response to fungus	2.58E-02
135	GO:0009058: biosynthetic process	3.35E-02
136	GO:0016036: cellular response to phosphate starvation	3.86E-02
137	GO:0016310: phosphorylation	3.92E-02
138	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	4.40E-02
139	GO:0010468: regulation of gene expression	4.60E-02

Rank	GO Term	Adjusted P value
1	GO:0015211: purine nucleoside transmembrane transporter activity	0.00E+00
2	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
3	GO:0080007: S-nitrosoglutathione reductase activity	0.00E+00
4	GO:0050342: tocopherol O-methyltransferase activity	0.00E+00
5	GO:0051766: inositol trisphosphate kinase activity	0.00E+00
6	GO:0051903: S-(hydroxymethyl)glutathione dehydrogenase activity	0.00E+00
7	GO:0051765: inositol tetrakisphosphate kinase activity	0.00E+00
8	GO:0050242: pyruvate, phosphate dikinase activity	0.00E+00
9	GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity	7.75E-05
10	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	7.75E-05
11	GO:0000824: inositol tetrakisphosphate 3-kinase activity	7.75E-05
12	GO:0004112: cyclic-nucleotide phosphodiesterase activity	7.75E-05
13	GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity	7.75E-05
14	GO:0047326: inositol tetrakisphosphate 5-kinase activity	7.75E-05
15	GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity	7.75E-05
16	GO:0004788: thiamine diphosphokinase activity	7.75E-05
17	GO:0004022: alcohol dehydrogenase (NAD) activity	1.40E-04
18	GO:0015179: L-amino acid transmembrane transporter activity	1.85E-04
19	GO:0004617: phosphoglycerate dehydrogenase activity	1.85E-04
20	GO:0003994: aconitate hydratase activity	1.85E-04
21	GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity	1.85E-04
22	GO:0004477: methenyltetrahydrofolate cyclohydrolase activity	1.85E-04
23	GO:0018708: thiol S-methyltransferase activity	1.85E-04
24	GO:0004061: arylformamidase activity	1.85E-04
25	GO:0019172: glyoxalase III activity	1.85E-04
26	GO:0016805: dipeptidase activity	3.11E-04
27	GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity	3.11E-04
28	GO:0016151: nickel cation binding	3.11E-04
29	GO:0016174: NAD(P)H oxidase activity	3.11E-04
30	GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity	3.11E-04
31	GO:0008964: phosphoenolpyruvate carboxylase activity	3.11E-04
32	GO:0003840: gamma-glutamyltransferase activity	3.11E-04
33	GO:0036374: glutathione hydrolase activity	3.11E-04
34	GO:0052654: L-leucine transaminase activity	4.49E-04
35	GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity	4.49E-04
36	GO:0052655: L-valine transaminase activity	4.49E-04
37	GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity	4.49E-04
38	GO:0015203: polyamine transmembrane transporter activity	4.49E-04
39	GO:0052656: L-isoleucine transaminase activity	4.49E-04
40	GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor	5.98E-04
41	GO:0004197: cysteine-type endopeptidase activity	5.98E-04
42	GO:0010011: auxin binding	5.98E-04
43	GO:0004345: glucose-6-phosphate dehydrogenase activity	5.98E-04
44	GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity	5.98E-04
45	GO:0004084: branched-chain-amino-acid transaminase activity	5.98E-04
46	GO:0004470: malic enzyme activity	5.98E-04
47	GO:0008878: glucose-1-phosphate adenylyltransferase activity	5.98E-04
48	GO:0005459: UDP-galactose transmembrane transporter activity	7.57E-04
49	GO:0008948: oxaloacetate decarboxylase activity	7.57E-04
50	GO:0036402: proteasome-activating ATPase activity	9.24E-04
51	GO:0031369: translation initiation factor binding	9.24E-04
52	GO:0035252: UDP-xylosyltransferase activity	9.24E-04
53	GO:0004656: procollagen-proline 4-dioxygenase activity	1.10E-03
54	GO:0004747: ribokinase activity	1.10E-03
55	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	1.10E-03
56	GO:0008235: metalloexopeptidase activity	1.29E-03
57	GO:0008865: fructokinase activity	1.48E-03
58	GO:0005507: copper ion binding	1.62E-03
59	GO:0046914: transition metal ion binding	1.69E-03
60	GO:0008889: glycerophosphodiester phosphodiesterase activity	1.91E-03
61	GO:0051287: NAD binding	1.99E-03
62	GO:0016844: strictosidine synthase activity	2.14E-03
63	GO:0015174: basic amino acid transmembrane transporter activity	2.14E-03
64	GO:0008234: cysteine-type peptidase activity	2.44E-03
65	GO:0004177: aminopeptidase activity	2.61E-03
66	GO:0005315: inorganic phosphate transmembrane transporter activity	3.12E-03
67	GO:0004175: endopeptidase activity	3.38E-03
68	GO:0008131: primary amine oxidase activity	3.38E-03
69	GO:0017025: TBP-class protein binding	3.66E-03
70	GO:0031418: L-ascorbic acid binding	4.23E-03
71	GO:0005385: zinc ion transmembrane transporter activity	4.23E-03
72	GO:0005345: purine nucleobase transmembrane transporter activity	4.52E-03
73	GO:0008324: cation transmembrane transporter activity	4.52E-03
74	GO:0015297: antiporter activity	5.13E-03
75	GO:0003727: single-stranded RNA binding	5.77E-03
76	GO:0003756: protein disulfide isomerase activity	5.77E-03
77	GO:0047134: protein-disulfide reductase activity	6.10E-03
78	GO:0046873: metal ion transmembrane transporter activity	6.78E-03
79	GO:0004791: thioredoxin-disulfide reductase activity	7.13E-03
80	GO:0016853: isomerase activity	7.13E-03
81	GO:0004872: receptor activity	7.49E-03
82	GO:0048038: quinone binding	7.85E-03
83	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	8.59E-03
84	GO:0016597: amino acid binding	9.75E-03
85	GO:0015250: water channel activity	1.02E-02
86	GO:0030145: manganese ion binding	1.36E-02
87	GO:0003824: catalytic activity	1.43E-02
88	GO:0005215: transporter activity	1.45E-02
89	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.45E-02
90	GO:0003697: single-stranded DNA binding	1.45E-02
91	GO:0050661: NADP binding	1.59E-02
92	GO:0051539: 4 iron, 4 sulfur cluster binding	1.59E-02
93	GO:0016491: oxidoreductase activity	1.80E-02
94	GO:0015293: symporter activity	1.88E-02
95	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.14E-02
96	GO:0016887: ATPase activity	2.37E-02
97	GO:0000166: nucleotide binding	2.71E-02
98	GO:0015035: protein disulfide oxidoreductase activity	2.81E-02
99	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.29E-02
100	GO:0008565: protein transporter activity	3.67E-02

Rank	GO Term	Adjusted P value
1	GO:0019822: P4 peroxisome	0.00E+00
2	GO:0005829: cytosol	1.18E-05
3	GO:0005773: vacuole	5.10E-05
4	GO:0000323: lytic vacuole	4.49E-04
5	GO:0005783: endoplasmic reticulum	4.93E-04
6	GO:0005788: endoplasmic reticulum lumen	8.43E-04
7	GO:0031597: cytosolic proteasome complex	1.10E-03
8	GO:0030173: integral component of Golgi membrane	1.10E-03
9	GO:0031595: nuclear proteasome complex	1.29E-03
10	GO:0005774: vacuolar membrane	1.37E-03
11	GO:0005811: lipid particle	1.69E-03
12	GO:0005737: cytoplasm	2.13E-03
13	GO:0008540: proteasome regulatory particle, base subcomplex	2.14E-03
14	GO:0005665: DNA-directed RNA polymerase II, core complex	2.86E-03
15	GO:0005886: plasma membrane	2.88E-03
16	GO:0016602: CCAAT-binding factor complex	3.12E-03
17	GO:0009507: chloroplast	3.31E-03
18	GO:0005764: lysosome	3.38E-03
19	GO:0030176: integral component of endoplasmic reticulum membrane	3.66E-03
20	GO:0005887: integral component of plasma membrane	3.70E-03
21	GO:0045271: respiratory chain complex I	4.52E-03
22	GO:0009570: chloroplast stroma	4.83E-03
23	GO:0005618: cell wall	6.44E-03
24	GO:0000785: chromatin	8.22E-03
25	GO:0005778: peroxisomal membrane	9.36E-03
26	GO:0000932: P-body	1.02E-02
27	GO:0090406: pollen tube	1.73E-02
28	GO:0031966: mitochondrial membrane	2.04E-02
29	GO:0000502: proteasome complex	2.14E-02
30	GO:0005747: mitochondrial respiratory chain complex I	2.47E-02
31	GO:0016020: membrane	2.52E-02
32	GO:0005777: peroxisome	3.11E-02
33	GO:0005794: Golgi apparatus	3.31E-02
34	GO:0005759: mitochondrial matrix	3.80E-02
35	GO:0005802: trans-Golgi network	4.33E-02
36	GO:0005615: extracellular space	4.40E-02
37	GO:0005768: endosome	4.91E-02