GO Enrichment Analysis of Co-expressed Genes with
AT1G77060
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 2 | GO:0090706: specification of plant organ position | 0.00E+00 |
| 3 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 4 | GO:1901698: response to nitrogen compound | 0.00E+00 |
| 5 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 6 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 7 | GO:0046677: response to antibiotic | 0.00E+00 |
| 8 | GO:0032544: plastid translation | 5.18E-06 |
| 9 | GO:0009735: response to cytokinin | 1.09E-05 |
| 10 | GO:0010207: photosystem II assembly | 3.23E-05 |
| 11 | GO:0015979: photosynthesis | 7.92E-05 |
| 12 | GO:0042549: photosystem II stabilization | 8.04E-05 |
| 13 | GO:0010019: chloroplast-nucleus signaling pathway | 1.11E-04 |
| 14 | GO:0009644: response to high light intensity | 1.17E-04 |
| 15 | GO:0006412: translation | 1.22E-04 |
| 16 | GO:0042371: vitamin K biosynthetic process | 2.18E-04 |
| 17 | GO:0065002: intracellular protein transmembrane transport | 2.18E-04 |
| 18 | GO:0034337: RNA folding | 2.18E-04 |
| 19 | GO:0010450: inflorescence meristem growth | 2.18E-04 |
| 20 | GO:0071588: hydrogen peroxide mediated signaling pathway | 2.18E-04 |
| 21 | GO:0010729: positive regulation of hydrogen peroxide biosynthetic process | 2.18E-04 |
| 22 | GO:0000476: maturation of 4.5S rRNA | 2.18E-04 |
| 23 | GO:0043953: protein transport by the Tat complex | 2.18E-04 |
| 24 | GO:0000967: rRNA 5'-end processing | 2.18E-04 |
| 25 | GO:0000481: maturation of 5S rRNA | 2.18E-04 |
| 26 | GO:0009657: plastid organization | 2.33E-04 |
| 27 | GO:0010206: photosystem II repair | 2.82E-04 |
| 28 | GO:0010027: thylakoid membrane organization | 3.47E-04 |
| 29 | GO:0009773: photosynthetic electron transport in photosystem I | 4.56E-04 |
| 30 | GO:0043085: positive regulation of catalytic activity | 4.56E-04 |
| 31 | GO:0080151: positive regulation of salicylic acid mediated signaling pathway | 4.86E-04 |
| 32 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 4.86E-04 |
| 33 | GO:0034470: ncRNA processing | 4.86E-04 |
| 34 | GO:0034755: iron ion transmembrane transport | 4.86E-04 |
| 35 | GO:0050992: dimethylallyl diphosphate biosynthetic process | 4.86E-04 |
| 36 | GO:0045165: cell fate commitment | 7.90E-04 |
| 37 | GO:0006000: fructose metabolic process | 7.90E-04 |
| 38 | GO:0006013: mannose metabolic process | 7.90E-04 |
| 39 | GO:0071705: nitrogen compound transport | 7.90E-04 |
| 40 | GO:0006696: ergosterol biosynthetic process | 7.90E-04 |
| 41 | GO:2001141: regulation of RNA biosynthetic process | 1.13E-03 |
| 42 | GO:0009800: cinnamic acid biosynthetic process | 1.13E-03 |
| 43 | GO:0006542: glutamine biosynthetic process | 1.50E-03 |
| 44 | GO:0019676: ammonia assimilation cycle | 1.50E-03 |
| 45 | GO:0010023: proanthocyanidin biosynthetic process | 1.50E-03 |
| 46 | GO:0071249: cellular response to nitrate | 1.50E-03 |
| 47 | GO:0045727: positive regulation of translation | 1.50E-03 |
| 48 | GO:0015994: chlorophyll metabolic process | 1.50E-03 |
| 49 | GO:2000038: regulation of stomatal complex development | 1.50E-03 |
| 50 | GO:0006546: glycine catabolic process | 1.50E-03 |
| 51 | GO:0006461: protein complex assembly | 1.91E-03 |
| 52 | GO:1902183: regulation of shoot apical meristem development | 1.91E-03 |
| 53 | GO:0010158: abaxial cell fate specification | 1.91E-03 |
| 54 | GO:0032876: negative regulation of DNA endoreduplication | 1.91E-03 |
| 55 | GO:0030308: negative regulation of cell growth | 1.91E-03 |
| 56 | GO:0009247: glycolipid biosynthetic process | 1.91E-03 |
| 57 | GO:0006564: L-serine biosynthetic process | 1.91E-03 |
| 58 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.91E-03 |
| 59 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 2.35E-03 |
| 60 | GO:0006559: L-phenylalanine catabolic process | 2.35E-03 |
| 61 | GO:1902456: regulation of stomatal opening | 2.35E-03 |
| 62 | GO:0000741: karyogamy | 2.35E-03 |
| 63 | GO:0006086: acetyl-CoA biosynthetic process from pyruvate | 2.35E-03 |
| 64 | GO:2000037: regulation of stomatal complex patterning | 2.83E-03 |
| 65 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2.83E-03 |
| 66 | GO:0009610: response to symbiotic fungus | 3.33E-03 |
| 67 | GO:0050829: defense response to Gram-negative bacterium | 3.33E-03 |
| 68 | GO:1900057: positive regulation of leaf senescence | 3.33E-03 |
| 69 | GO:0009645: response to low light intensity stimulus | 3.33E-03 |
| 70 | GO:0042128: nitrate assimilation | 3.53E-03 |
| 71 | GO:0055114: oxidation-reduction process | 3.77E-03 |
| 72 | GO:0010492: maintenance of shoot apical meristem identity | 3.86E-03 |
| 73 | GO:0009231: riboflavin biosynthetic process | 3.86E-03 |
| 74 | GO:0009642: response to light intensity | 3.86E-03 |
| 75 | GO:0006402: mRNA catabolic process | 3.86E-03 |
| 76 | GO:0030091: protein repair | 3.86E-03 |
| 77 | GO:0009850: auxin metabolic process | 3.86E-03 |
| 78 | GO:0019375: galactolipid biosynthetic process | 3.86E-03 |
| 79 | GO:0032508: DNA duplex unwinding | 3.86E-03 |
| 80 | GO:0000028: ribosomal small subunit assembly | 3.86E-03 |
| 81 | GO:0007623: circadian rhythm | 4.10E-03 |
| 82 | GO:0018298: protein-chromophore linkage | 4.12E-03 |
| 83 | GO:0010093: specification of floral organ identity | 4.42E-03 |
| 84 | GO:0009699: phenylpropanoid biosynthetic process | 4.42E-03 |
| 85 | GO:0006002: fructose 6-phosphate metabolic process | 4.42E-03 |
| 86 | GO:0071482: cellular response to light stimulus | 4.42E-03 |
| 87 | GO:0009051: pentose-phosphate shunt, oxidative branch | 5.00E-03 |
| 88 | GO:0048507: meristem development | 5.00E-03 |
| 89 | GO:2000024: regulation of leaf development | 5.00E-03 |
| 90 | GO:0034599: cellular response to oxidative stress | 5.46E-03 |
| 91 | GO:0009299: mRNA transcription | 6.25E-03 |
| 92 | GO:0010114: response to red light | 6.73E-03 |
| 93 | GO:0009698: phenylpropanoid metabolic process | 6.91E-03 |
| 94 | GO:0019684: photosynthesis, light reaction | 6.91E-03 |
| 95 | GO:0009089: lysine biosynthetic process via diaminopimelate | 6.91E-03 |
| 96 | GO:0006879: cellular iron ion homeostasis | 6.91E-03 |
| 97 | GO:0006352: DNA-templated transcription, initiation | 6.91E-03 |
| 98 | GO:0009750: response to fructose | 6.91E-03 |
| 99 | GO:0009658: chloroplast organization | 7.15E-03 |
| 100 | GO:0006979: response to oxidative stress | 7.31E-03 |
| 101 | GO:0042254: ribosome biogenesis | 7.32E-03 |
| 102 | GO:0008361: regulation of cell size | 7.60E-03 |
| 103 | GO:0005983: starch catabolic process | 7.60E-03 |
| 104 | GO:0015706: nitrate transport | 7.60E-03 |
| 105 | GO:2000028: regulation of photoperiodism, flowering | 8.30E-03 |
| 106 | GO:0018107: peptidyl-threonine phosphorylation | 8.30E-03 |
| 107 | GO:0009718: anthocyanin-containing compound biosynthetic process | 8.30E-03 |
| 108 | GO:0009725: response to hormone | 8.30E-03 |
| 109 | GO:0006094: gluconeogenesis | 8.30E-03 |
| 110 | GO:0009767: photosynthetic electron transport chain | 8.30E-03 |
| 111 | GO:0005986: sucrose biosynthetic process | 8.30E-03 |
| 112 | GO:0006006: glucose metabolic process | 8.30E-03 |
| 113 | GO:0009723: response to ethylene | 8.60E-03 |
| 114 | GO:0009933: meristem structural organization | 9.03E-03 |
| 115 | GO:0006364: rRNA processing | 9.08E-03 |
| 116 | GO:0010167: response to nitrate | 9.79E-03 |
| 117 | GO:0009944: polarity specification of adaxial/abaxial axis | 1.14E-02 |
| 118 | GO:0006418: tRNA aminoacylation for protein translation | 1.22E-02 |
| 119 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.22E-02 |
| 120 | GO:0042545: cell wall modification | 1.26E-02 |
| 121 | GO:0046686: response to cadmium ion | 1.55E-02 |
| 122 | GO:0006284: base-excision repair | 1.57E-02 |
| 123 | GO:0009561: megagametogenesis | 1.57E-02 |
| 124 | GO:0016117: carotenoid biosynthetic process | 1.66E-02 |
| 125 | GO:0042631: cellular response to water deprivation | 1.75E-02 |
| 126 | GO:0008152: metabolic process | 1.75E-02 |
| 127 | GO:0000413: protein peptidyl-prolyl isomerization | 1.75E-02 |
| 128 | GO:0010197: polar nucleus fusion | 1.85E-02 |
| 129 | GO:0042744: hydrogen peroxide catabolic process | 1.85E-02 |
| 130 | GO:0010154: fruit development | 1.85E-02 |
| 131 | GO:0006662: glycerol ether metabolic process | 1.85E-02 |
| 132 | GO:0002229: defense response to oomycetes | 2.15E-02 |
| 133 | GO:0000302: response to reactive oxygen species | 2.15E-02 |
| 134 | GO:0045490: pectin catabolic process | 2.25E-02 |
| 135 | GO:0009451: RNA modification | 2.30E-02 |
| 136 | GO:0030163: protein catabolic process | 2.36E-02 |
| 137 | GO:0010090: trichome morphogenesis | 2.36E-02 |
| 138 | GO:0009567: double fertilization forming a zygote and endosperm | 2.46E-02 |
| 139 | GO:0071805: potassium ion transmembrane transport | 2.57E-02 |
| 140 | GO:0009737: response to abscisic acid | 2.64E-02 |
| 141 | GO:0015995: chlorophyll biosynthetic process | 3.14E-02 |
| 142 | GO:0016311: dephosphorylation | 3.25E-02 |
| 143 | GO:0048481: plant ovule development | 3.37E-02 |
| 144 | GO:0000160: phosphorelay signal transduction system | 3.49E-02 |
| 145 | GO:0007568: aging | 3.74E-02 |
| 146 | GO:0009631: cold acclimation | 3.74E-02 |
| 147 | GO:0009409: response to cold | 3.76E-02 |
| 148 | GO:0009637: response to blue light | 3.99E-02 |
| 149 | GO:0006810: transport | 4.22E-02 |
| 150 | GO:0009744: response to sucrose | 4.78E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 2 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 3 | GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity | 0.00E+00 |
| 4 | GO:0047513: 1,2-alpha-L-fucosidase activity | 0.00E+00 |
| 5 | GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity | 0.00E+00 |
| 6 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 7 | GO:0046905: phytoene synthase activity | 0.00E+00 |
| 8 | GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity | 0.00E+00 |
| 9 | GO:0019843: rRNA binding | 7.84E-15 |
| 10 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 4.19E-07 |
| 11 | GO:0005528: FK506 binding | 1.44E-06 |
| 12 | GO:0003735: structural constituent of ribosome | 1.03E-05 |
| 13 | GO:0046906: tetrapyrrole binding | 2.18E-04 |
| 14 | GO:0052638: indole-3-butyrate beta-glucosyltransferase activity | 2.18E-04 |
| 15 | GO:0051996: squalene synthase activity | 2.18E-04 |
| 16 | GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity | 2.18E-04 |
| 17 | GO:0047746: chlorophyllase activity | 4.86E-04 |
| 18 | GO:0043425: bHLH transcription factor binding | 4.86E-04 |
| 19 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 4.86E-04 |
| 20 | GO:0004617: phosphoglycerate dehydrogenase activity | 4.86E-04 |
| 21 | GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity | 4.86E-04 |
| 22 | GO:0004047: aminomethyltransferase activity | 4.86E-04 |
| 23 | GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity | 4.86E-04 |
| 24 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 4.86E-04 |
| 25 | GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity | 4.86E-04 |
| 26 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 4.86E-04 |
| 27 | GO:0004310: farnesyl-diphosphate farnesyltransferase activity | 4.86E-04 |
| 28 | GO:0031072: heat shock protein binding | 5.92E-04 |
| 29 | GO:0008266: poly(U) RNA binding | 6.66E-04 |
| 30 | GO:0045548: phenylalanine ammonia-lyase activity | 7.90E-04 |
| 31 | GO:0002161: aminoacyl-tRNA editing activity | 7.90E-04 |
| 32 | GO:0003935: GTP cyclohydrolase II activity | 7.90E-04 |
| 33 | GO:0035250: UDP-galactosyltransferase activity | 1.13E-03 |
| 34 | GO:0001053: plastid sigma factor activity | 1.50E-03 |
| 35 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 1.50E-03 |
| 36 | GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity | 1.50E-03 |
| 37 | GO:0016987: sigma factor activity | 1.50E-03 |
| 38 | GO:0004356: glutamate-ammonia ligase activity | 1.91E-03 |
| 39 | GO:0008725: DNA-3-methyladenine glycosylase activity | 1.91E-03 |
| 40 | GO:0051538: 3 iron, 4 sulfur cluster binding | 1.91E-03 |
| 41 | GO:0004130: cytochrome-c peroxidase activity | 2.35E-03 |
| 42 | GO:0016688: L-ascorbate peroxidase activity | 2.35E-03 |
| 43 | GO:0004559: alpha-mannosidase activity | 2.83E-03 |
| 44 | GO:0033743: peptide-methionine (R)-S-oxide reductase activity | 2.83E-03 |
| 45 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 2.83E-03 |
| 46 | GO:0016597: amino acid binding | 2.99E-03 |
| 47 | GO:0016787: hydrolase activity | 3.03E-03 |
| 48 | GO:0019899: enzyme binding | 3.33E-03 |
| 49 | GO:0016168: chlorophyll binding | 3.35E-03 |
| 50 | GO:0046872: metal ion binding | 3.41E-03 |
| 51 | GO:0004033: aldo-keto reductase (NADP) activity | 3.86E-03 |
| 52 | GO:0005381: iron ion transmembrane transporter activity | 5.62E-03 |
| 53 | GO:0008047: enzyme activator activity | 6.25E-03 |
| 54 | GO:0051537: 2 iron, 2 sulfur cluster binding | 7.28E-03 |
| 55 | GO:0000049: tRNA binding | 7.60E-03 |
| 56 | GO:0004022: alcohol dehydrogenase (NAD) activity | 8.30E-03 |
| 57 | GO:0045330: aspartyl esterase activity | 1.01E-02 |
| 58 | GO:0031409: pigment binding | 1.06E-02 |
| 59 | GO:0030599: pectinesterase activity | 1.22E-02 |
| 60 | GO:0015079: potassium ion transmembrane transporter activity | 1.22E-02 |
| 61 | GO:0051082: unfolded protein binding | 1.30E-02 |
| 62 | GO:0022891: substrate-specific transmembrane transporter activity | 1.48E-02 |
| 63 | GO:0003727: single-stranded RNA binding | 1.57E-02 |
| 64 | GO:0003756: protein disulfide isomerase activity | 1.57E-02 |
| 65 | GO:0047134: protein-disulfide reductase activity | 1.66E-02 |
| 66 | GO:0004812: aminoacyl-tRNA ligase activity | 1.66E-02 |
| 67 | GO:0004791: thioredoxin-disulfide reductase activity | 1.95E-02 |
| 68 | GO:0050662: coenzyme binding | 1.95E-02 |
| 69 | GO:0003723: RNA binding | 2.00E-02 |
| 70 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 2.36E-02 |
| 71 | GO:0000156: phosphorelay response regulator activity | 2.36E-02 |
| 72 | GO:0008194: UDP-glycosyltransferase activity | 2.51E-02 |
| 73 | GO:0008483: transaminase activity | 2.57E-02 |
| 74 | GO:0003743: translation initiation factor activity | 2.62E-02 |
| 75 | GO:0042802: identical protein binding | 2.85E-02 |
| 76 | GO:0008236: serine-type peptidase activity | 3.25E-02 |
| 77 | GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding | 3.25E-02 |
| 78 | GO:0008168: methyltransferase activity | 3.34E-02 |
| 79 | GO:0015238: drug transmembrane transporter activity | 3.49E-02 |
| 80 | GO:0004222: metalloendopeptidase activity | 3.62E-02 |
| 81 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 3.74E-02 |
| 82 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 4.12E-02 |
| 83 | GO:0050661: NADP binding | 4.38E-02 |
| 84 | GO:0004185: serine-type carboxypeptidase activity | 4.78E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009547: plastid ribosome | 0.00E+00 |
| 2 | GO:0043235: receptor complex | 0.00E+00 |
| 3 | GO:0005943: phosphatidylinositol 3-kinase complex, class IA | 0.00E+00 |
| 4 | GO:0009507: chloroplast | 8.07E-36 |
| 5 | GO:0009570: chloroplast stroma | 8.76E-28 |
| 6 | GO:0009941: chloroplast envelope | 6.80E-23 |
| 7 | GO:0009534: chloroplast thylakoid | 2.77E-22 |
| 8 | GO:0009535: chloroplast thylakoid membrane | 7.34E-20 |
| 9 | GO:0009543: chloroplast thylakoid lumen | 1.03E-11 |
| 10 | GO:0009579: thylakoid | 2.88E-08 |
| 11 | GO:0000312: plastid small ribosomal subunit | 6.63E-07 |
| 12 | GO:0031977: thylakoid lumen | 5.17E-06 |
| 13 | GO:0009533: chloroplast stromal thylakoid | 1.47E-04 |
| 14 | GO:0009523: photosystem II | 1.91E-04 |
| 15 | GO:0009344: nitrite reductase complex [NAD(P)H] | 2.18E-04 |
| 16 | GO:0031361: integral component of thylakoid membrane | 2.18E-04 |
| 17 | GO:0009782: photosystem I antenna complex | 2.18E-04 |
| 18 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.82E-04 |
| 19 | GO:0010287: plastoglobule | 4.06E-04 |
| 20 | GO:0080085: signal recognition particle, chloroplast targeting | 4.86E-04 |
| 21 | GO:0000311: plastid large ribosomal subunit | 5.22E-04 |
| 22 | GO:0005840: ribosome | 6.34E-04 |
| 23 | GO:0030095: chloroplast photosystem II | 6.66E-04 |
| 24 | GO:0033281: TAT protein transport complex | 7.90E-04 |
| 25 | GO:0009654: photosystem II oxygen evolving complex | 1.01E-03 |
| 26 | GO:0022627: cytosolic small ribosomal subunit | 1.10E-03 |
| 27 | GO:0042646: plastid nucleoid | 1.13E-03 |
| 28 | GO:0031969: chloroplast membrane | 1.93E-03 |
| 29 | GO:0009706: chloroplast inner membrane | 2.05E-03 |
| 30 | GO:0019898: extrinsic component of membrane | 2.06E-03 |
| 31 | GO:0009295: nucleoid | 2.82E-03 |
| 32 | GO:0016363: nuclear matrix | 2.83E-03 |
| 33 | GO:0005762: mitochondrial large ribosomal subunit | 2.83E-03 |
| 34 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 4.42E-03 |
| 35 | GO:0015934: large ribosomal subunit | 4.76E-03 |
| 36 | GO:0008180: COP9 signalosome | 5.00E-03 |
| 37 | GO:0032040: small-subunit processome | 7.60E-03 |
| 38 | GO:0030076: light-harvesting complex | 9.79E-03 |
| 39 | GO:0009536: plastid | 1.03E-02 |
| 40 | GO:0009505: plant-type cell wall | 1.07E-02 |
| 41 | GO:0015935: small ribosomal subunit | 1.30E-02 |
| 42 | GO:0005623: cell | 1.67E-02 |
| 43 | GO:0043231: intracellular membrane-bounded organelle | 1.75E-02 |
| 44 | GO:0009522: photosystem I | 1.95E-02 |
| 45 | GO:0071944: cell periphery | 2.36E-02 |
| 46 | GO:0016020: membrane | 2.44E-02 |
| 47 | GO:0010319: stromule | 2.57E-02 |
| 48 | GO:0030529: intracellular ribonucleoprotein complex | 2.79E-02 |
| 49 | GO:0022626: cytosolic ribosome | 3.00E-02 |
| 50 | GO:0019005: SCF ubiquitin ligase complex | 3.37E-02 |