Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G75460

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1901918: negative regulation of exoribonuclease activity0.00E+00
2GO:0016553: base conversion or substitution editing0.00E+00
3GO:0033494: ferulate metabolic process0.00E+00
4GO:2000121: regulation of removal of superoxide radicals0.00E+00
5GO:0061635: regulation of protein complex stability0.00E+00
6GO:0005996: monosaccharide metabolic process0.00E+00
7GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
8GO:0090042: tubulin deacetylation0.00E+00
9GO:0018023: peptidyl-lysine trimethylation0.00E+00
10GO:0019284: L-methionine salvage from S-adenosylmethionine0.00E+00
11GO:2000505: regulation of energy homeostasis0.00E+00
12GO:0002184: cytoplasmic translational termination0.00E+00
13GO:0015979: photosynthesis3.65E-19
14GO:0009773: photosynthetic electron transport in photosystem I2.97E-17
15GO:0009735: response to cytokinin1.31E-08
16GO:0010206: photosystem II repair5.98E-08
17GO:0010207: photosystem II assembly8.39E-07
18GO:0009768: photosynthesis, light harvesting in photosystem I2.84E-06
19GO:0015995: chlorophyll biosynthetic process6.70E-06
20GO:0018298: protein-chromophore linkage9.09E-06
21GO:0009409: response to cold1.17E-05
22GO:0006094: gluconeogenesis1.91E-05
23GO:0034755: iron ion transmembrane transport1.97E-05
24GO:0030388: fructose 1,6-bisphosphate metabolic process1.97E-05
25GO:0010196: nonphotochemical quenching3.99E-05
26GO:0009772: photosynthetic electron transport in photosystem II3.99E-05
27GO:0006000: fructose metabolic process6.44E-05
28GO:0006810: transport6.85E-05
29GO:0032544: plastid translation8.05E-05
30GO:0010218: response to far red light1.26E-04
31GO:0080170: hydrogen peroxide transmembrane transport1.34E-04
32GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.34E-04
33GO:0071484: cellular response to light intensity1.34E-04
34GO:0042742: defense response to bacterium1.62E-04
35GO:0019464: glycine decarboxylation via glycine cleavage system2.28E-04
36GO:2000122: negative regulation of stomatal complex development2.28E-04
37GO:0045727: positive regulation of translation2.28E-04
38GO:0015994: chlorophyll metabolic process2.28E-04
39GO:0006546: glycine catabolic process2.28E-04
40GO:0010037: response to carbon dioxide2.28E-04
41GO:0015976: carbon utilization2.28E-04
42GO:0010114: response to red light2.81E-04
43GO:0009644: response to high light intensity3.27E-04
44GO:0019253: reductive pentose-phosphate cycle3.74E-04
45GO:0010027: thylakoid membrane organization4.74E-04
46GO:0042549: photosystem II stabilization4.78E-04
47GO:0010019: chloroplast-nucleus signaling pathway6.32E-04
48GO:0043489: RNA stabilization6.78E-04
49GO:0043266: regulation of potassium ion transport6.78E-04
50GO:0071370: cellular response to gibberellin stimulus6.78E-04
51GO:0006824: cobalt ion transport6.78E-04
52GO:0000481: maturation of 5S rRNA6.78E-04
53GO:0071461: cellular response to redox state6.78E-04
54GO:2000021: regulation of ion homeostasis6.78E-04
55GO:0010028: xanthophyll cycle6.78E-04
56GO:0034337: RNA folding6.78E-04
57GO:0071588: hydrogen peroxide mediated signaling pathway6.78E-04
58GO:0010729: positive regulation of hydrogen peroxide biosynthetic process6.78E-04
59GO:0009817: defense response to fungus, incompatible interaction7.18E-04
60GO:0009645: response to low light intensity stimulus8.07E-04
61GO:0009637: response to blue light1.03E-03
62GO:0071482: cellular response to light stimulus1.22E-03
63GO:0009657: plastid organization1.22E-03
64GO:0006002: fructose 6-phosphate metabolic process1.22E-03
65GO:0034220: ion transmembrane transport1.26E-03
66GO:0000413: protein peptidyl-prolyl isomerization1.26E-03
67GO:0046741: transport of virus in host, tissue to tissue1.46E-03
68GO:0080005: photosystem stoichiometry adjustment1.46E-03
69GO:1900871: chloroplast mRNA modification1.46E-03
70GO:0010541: acropetal auxin transport1.46E-03
71GO:0018026: peptidyl-lysine monomethylation1.46E-03
72GO:0016122: xanthophyll metabolic process1.46E-03
73GO:0010275: NAD(P)H dehydrogenase complex assembly1.46E-03
74GO:0015986: ATP synthesis coupled proton transport1.52E-03
75GO:0009638: phototropism1.73E-03
76GO:0019684: photosynthesis, light reaction2.35E-03
77GO:0018119: peptidyl-cysteine S-nitrosylation2.35E-03
78GO:0000280: nuclear division2.41E-03
79GO:0090391: granum assembly2.41E-03
80GO:0006518: peptide metabolic process2.41E-03
81GO:0010160: formation of animal organ boundary2.41E-03
82GO:0045493: xylan catabolic process2.41E-03
83GO:2001295: malonyl-CoA biosynthetic process2.41E-03
84GO:0009767: photosynthetic electron transport chain3.06E-03
85GO:0005986: sucrose biosynthetic process3.06E-03
86GO:0042128: nitrate assimilation3.37E-03
87GO:0010143: cutin biosynthetic process3.46E-03
88GO:0009226: nucleotide-sugar biosynthetic process3.51E-03
89GO:0043481: anthocyanin accumulation in tissues in response to UV light3.51E-03
90GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity3.51E-03
91GO:1901332: negative regulation of lateral root development3.51E-03
92GO:2001141: regulation of RNA biosynthetic process3.51E-03
93GO:0046836: glycolipid transport3.51E-03
94GO:0051513: regulation of monopolar cell growth3.51E-03
95GO:0009152: purine ribonucleotide biosynthetic process3.51E-03
96GO:0046653: tetrahydrofolate metabolic process3.51E-03
97GO:0005985: sucrose metabolic process3.88E-03
98GO:0006636: unsaturated fatty acid biosynthetic process4.33E-03
99GO:0006833: water transport4.33E-03
100GO:0009765: photosynthesis, light harvesting4.74E-03
101GO:0030104: water homeostasis4.74E-03
102GO:0010021: amylopectin biosynthetic process4.74E-03
103GO:0010023: proanthocyanidin biosynthetic process4.74E-03
104GO:0009658: chloroplast organization5.28E-03
105GO:0008152: metabolic process5.82E-03
106GO:0034052: positive regulation of plant-type hypersensitive response6.09E-03
107GO:0010117: photoprotection6.09E-03
108GO:0016120: carotene biosynthetic process6.09E-03
109GO:0031365: N-terminal protein amino acid modification6.09E-03
110GO:0006461: protein complex assembly6.09E-03
111GO:0006412: translation7.10E-03
112GO:0060918: auxin transport7.56E-03
113GO:1902456: regulation of stomatal opening7.56E-03
114GO:0000741: karyogamy7.56E-03
115GO:0010256: endomembrane system organization7.56E-03
116GO:0006633: fatty acid biosynthetic process8.28E-03
117GO:0042631: cellular response to water deprivation8.95E-03
118GO:0019509: L-methionine salvage from methylthioadenosine9.15E-03
119GO:0009958: positive gravitropism9.67E-03
120GO:1900056: negative regulation of leaf senescence1.09E-02
121GO:0009769: photosynthesis, light harvesting in photosystem II1.09E-02
122GO:0019252: starch biosynthetic process1.12E-02
123GO:0000302: response to reactive oxygen species1.20E-02
124GO:0010439: regulation of glucosinolate biosynthetic process1.27E-02
125GO:0009819: drought recovery1.27E-02
126GO:0009850: auxin metabolic process1.27E-02
127GO:0043068: positive regulation of programmed cell death1.27E-02
128GO:0032508: DNA duplex unwinding1.27E-02
129GO:0010492: maintenance of shoot apical meristem identity1.27E-02
130GO:0048564: photosystem I assembly1.27E-02
131GO:0006096: glycolytic process1.41E-02
132GO:0009051: pentose-phosphate shunt, oxidative branch1.66E-02
133GO:0090305: nucleic acid phosphodiester bond hydrolysis1.66E-02
134GO:0006098: pentose-phosphate shunt1.66E-02
135GO:0048507: meristem development1.66E-02
136GO:0006754: ATP biosynthetic process1.66E-02
137GO:0010205: photoinhibition1.86E-02
138GO:0042254: ribosome biogenesis1.91E-02
139GO:0010411: xyloglucan metabolic process2.05E-02
140GO:0009870: defense response signaling pathway, resistance gene-dependent2.08E-02
141GO:0006949: syncytium formation2.08E-02
142GO:0009089: lysine biosynthetic process via diaminopimelate2.31E-02
143GO:0009698: phenylpropanoid metabolic process2.31E-02
144GO:0043085: positive regulation of catalytic activity2.31E-02
145GO:0006879: cellular iron ion homeostasis2.31E-02
146GO:0006352: DNA-templated transcription, initiation2.31E-02
147GO:0000272: polysaccharide catabolic process2.31E-02
148GO:0010015: root morphogenesis2.31E-02
149GO:0005975: carbohydrate metabolic process2.40E-02
150GO:0016024: CDP-diacylglycerol biosynthetic process2.54E-02
151GO:0008361: regulation of cell size2.54E-02
152GO:0010119: regulation of stomatal movement2.64E-02
153GO:0009631: cold acclimation2.64E-02
154GO:0010628: positive regulation of gene expression2.79E-02
155GO:0006006: glucose metabolic process2.79E-02
156GO:0018107: peptidyl-threonine phosphorylation2.79E-02
157GO:0009718: anthocyanin-containing compound biosynthetic process2.79E-02
158GO:0009853: photorespiration2.89E-02
159GO:0034599: cellular response to oxidative stress3.02E-02
160GO:0010540: basipetal auxin transport3.04E-02
161GO:0030001: metal ion transport3.29E-02
162GO:0010030: positive regulation of seed germination3.29E-02
163GO:0045454: cell redox homeostasis3.33E-02
164GO:0007623: circadian rhythm3.55E-02
165GO:0000027: ribosomal large subunit assembly3.83E-02
166GO:0005992: trehalose biosynthetic process3.83E-02
167GO:0016575: histone deacetylation4.11E-02
168GO:0007017: microtubule-based process4.11E-02
169GO:0055114: oxidation-reduction process4.12E-02
170GO:0016042: lipid catabolic process4.32E-02
171GO:0061077: chaperone-mediated protein folding4.40E-02
172GO:0009269: response to desiccation4.40E-02
173GO:0048511: rhythmic process4.40E-02
174GO:0009664: plant-type cell wall organization4.66E-02
175GO:0009814: defense response, incompatible interaction4.69E-02
176GO:0010017: red or far-red light signaling pathway4.69E-02
177GO:0035428: hexose transmembrane transport4.69E-02
178GO:0009831: plant-type cell wall modification involved in multidimensional cell growth4.98E-02
179GO:0006012: galactose metabolic process4.98E-02
180GO:0006364: rRNA processing5.00E-02
181GO:0009585: red, far-red light phototransduction5.00E-02
RankGO TermAdjusted P value
1GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
2GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
3GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
4GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity0.00E+00
5GO:0046422: violaxanthin de-epoxidase activity0.00E+00
6GO:0046570: methylthioribulose 1-phosphate dehydratase activity0.00E+00
7GO:0043874: acireductone synthase activity0.00E+00
8GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
9GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity0.00E+00
10GO:0043014: alpha-tubulin binding0.00E+00
11GO:0051721: protein phosphatase 2A binding0.00E+00
12GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
13GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
14GO:0042903: tubulin deacetylase activity0.00E+00
15GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
16GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.14E-09
17GO:0005528: FK506 binding1.35E-09
18GO:0019843: rRNA binding5.63E-07
19GO:0016851: magnesium chelatase activity1.35E-06
20GO:0031409: pigment binding1.60E-06
21GO:0016168: chlorophyll binding4.84E-06
22GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity1.97E-05
23GO:0051920: peroxiredoxin activity2.58E-05
24GO:0016209: antioxidant activity5.80E-05
25GO:0004375: glycine dehydrogenase (decarboxylating) activity1.34E-04
26GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.28E-04
27GO:0008266: poly(U) RNA binding3.74E-04
28GO:0004130: cytochrome-c peroxidase activity4.78E-04
29GO:0004332: fructose-bisphosphate aldolase activity4.78E-04
30GO:0004017: adenylate kinase activity6.32E-04
31GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity6.32E-04
32GO:0004856: xylulokinase activity6.78E-04
33GO:0052638: indole-3-butyrate beta-glucosyltransferase activity6.78E-04
34GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity6.78E-04
35GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity6.78E-04
36GO:0045485: omega-6 fatty acid desaturase activity6.78E-04
37GO:0046906: tetrapyrrole binding6.78E-04
38GO:0004033: aldo-keto reductase (NADP) activity1.00E-03
39GO:0005509: calcium ion binding1.08E-03
40GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity1.46E-03
41GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity1.46E-03
42GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.46E-03
43GO:0008967: phosphoglycolate phosphatase activity1.46E-03
44GO:0047746: chlorophyllase activity1.46E-03
45GO:0042389: omega-3 fatty acid desaturase activity1.46E-03
46GO:0016868: intramolecular transferase activity, phosphotransferases1.46E-03
47GO:0004618: phosphoglycerate kinase activity1.46E-03
48GO:0010297: heteropolysaccharide binding1.46E-03
49GO:0004047: aminomethyltransferase activity1.46E-03
50GO:0033201: alpha-1,4-glucan synthase activity1.46E-03
51GO:0003735: structural constituent of ribosome1.58E-03
52GO:0005381: iron ion transmembrane transporter activity1.73E-03
53GO:0010277: chlorophyllide a oxygenase [overall] activity2.41E-03
54GO:0004373: glycogen (starch) synthase activity2.41E-03
55GO:0050734: hydroxycinnamoyltransferase activity2.41E-03
56GO:0004075: biotin carboxylase activity2.41E-03
57GO:0030267: glyoxylate reductase (NADP) activity2.41E-03
58GO:0016742: hydroxymethyl-, formyl- and related transferase activity2.41E-03
59GO:0008864: formyltetrahydrofolate deformylase activity2.41E-03
60GO:0004324: ferredoxin-NADP+ reductase activity2.41E-03
61GO:0015250: water channel activity2.93E-03
62GO:0004089: carbonate dehydratase activity3.06E-03
63GO:0019201: nucleotide kinase activity3.51E-03
64GO:0048487: beta-tubulin binding3.51E-03
65GO:0043023: ribosomal large subunit binding3.51E-03
66GO:0017089: glycolipid transporter activity3.51E-03
67GO:0008236: serine-type peptidase activity3.86E-03
68GO:0004045: aminoacyl-tRNA hydrolase activity4.74E-03
69GO:0016987: sigma factor activity4.74E-03
70GO:0009011: starch synthase activity4.74E-03
71GO:0009044: xylan 1,4-beta-xylosidase activity4.74E-03
72GO:1990137: plant seed peroxidase activity4.74E-03
73GO:0046556: alpha-L-arabinofuranosidase activity4.74E-03
74GO:0004659: prenyltransferase activity4.74E-03
75GO:0016279: protein-lysine N-methyltransferase activity4.74E-03
76GO:0001053: plastid sigma factor activity4.74E-03
77GO:0004345: glucose-6-phosphate dehydrogenase activity4.74E-03
78GO:0016836: hydro-lyase activity4.74E-03
79GO:0051861: glycolipid binding4.74E-03
80GO:0016788: hydrolase activity, acting on ester bonds5.45E-03
81GO:0003959: NADPH dehydrogenase activity6.09E-03
82GO:0016773: phosphotransferase activity, alcohol group as acceptor6.09E-03
83GO:0003989: acetyl-CoA carboxylase activity6.09E-03
84GO:0030570: pectate lyase activity7.01E-03
85GO:0016688: L-ascorbate peroxidase activity7.56E-03
86GO:0004366: glycerol-3-phosphate O-acyltransferase activity7.56E-03
87GO:0042578: phosphoric ester hydrolase activity7.56E-03
88GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity7.56E-03
89GO:0043621: protein self-association8.57E-03
90GO:0051537: 2 iron, 2 sulfur cluster binding8.57E-03
91GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity9.15E-03
92GO:0004602: glutathione peroxidase activity9.15E-03
93GO:0046933: proton-transporting ATP synthase activity, rotational mechanism9.67E-03
94GO:0050662: coenzyme binding1.04E-02
95GO:0016787: hydrolase activity1.08E-02
96GO:0019899: enzyme binding1.09E-02
97GO:0008235: metalloexopeptidase activity1.09E-02
98GO:0048038: quinone binding1.20E-02
99GO:0004034: aldose 1-epimerase activity1.27E-02
100GO:0004564: beta-fructofuranosidase activity1.27E-02
101GO:0015078: hydrogen ion transmembrane transporter activity1.46E-02
102GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)1.46E-02
103GO:0016791: phosphatase activity1.46E-02
104GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water1.46E-02
105GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity1.66E-02
106GO:0004601: peroxidase activity1.85E-02
107GO:0004575: sucrose alpha-glucosidase activity1.86E-02
108GO:0004805: trehalose-phosphatase activity2.08E-02
109GO:0030234: enzyme regulator activity2.08E-02
110GO:0004177: aminopeptidase activity2.31E-02
111GO:0047372: acylglycerol lipase activity2.31E-02
112GO:0004222: metalloendopeptidase activity2.51E-02
113GO:0008378: galactosyltransferase activity2.54E-02
114GO:0004252: serine-type endopeptidase activity2.70E-02
115GO:0004565: beta-galactosidase activity2.79E-02
116GO:0004022: alcohol dehydrogenase (NAD) activity2.79E-02
117GO:0010329: auxin efflux transmembrane transporter activity2.79E-02
118GO:0031072: heat shock protein binding2.79E-02
119GO:0052689: carboxylic ester hydrolase activity2.96E-02
120GO:0046872: metal ion binding3.34E-02
121GO:0004185: serine-type carboxypeptidase activity3.72E-02
122GO:0004407: histone deacetylase activity3.83E-02
123GO:0043424: protein histidine kinase binding4.11E-02
124GO:0015293: symporter activity4.18E-02
125GO:0004707: MAP kinase activity4.40E-02
126GO:0022891: substrate-specific transmembrane transporter activity4.98E-02
RankGO TermAdjusted P value
1GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
2GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
3GO:0098572: stromal side of plastid thylakoid membrane0.00E+00
4GO:0009507: chloroplast1.55E-86
5GO:0009535: chloroplast thylakoid membrane3.92E-68
6GO:0009534: chloroplast thylakoid1.78E-66
7GO:0009941: chloroplast envelope6.90E-46
8GO:0009579: thylakoid1.37E-43
9GO:0009570: chloroplast stroma1.50E-40
10GO:0009543: chloroplast thylakoid lumen9.86E-40
11GO:0031977: thylakoid lumen5.96E-21
12GO:0030095: chloroplast photosystem II4.96E-16
13GO:0010287: plastoglobule6.95E-12
14GO:0009654: photosystem II oxygen evolving complex3.95E-11
15GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)7.11E-10
16GO:0019898: extrinsic component of membrane1.21E-09
17GO:0010319: stromule1.32E-07
18GO:0010007: magnesium chelatase complex2.86E-07
19GO:0009533: chloroplast stromal thylakoid7.53E-07
20GO:0009523: photosystem II1.02E-06
21GO:0048046: apoplast1.25E-06
22GO:0016020: membrane9.85E-06
23GO:0009522: photosystem I1.66E-05
24GO:0009706: chloroplast inner membrane2.64E-05
25GO:0005960: glycine cleavage complex1.34E-04
26GO:0031969: chloroplast membrane1.52E-04
27GO:0030076: light-harvesting complex4.36E-04
28GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)4.78E-04
29GO:0042651: thylakoid membrane6.56E-04
30GO:0009782: photosystem I antenna complex6.78E-04
31GO:0043674: columella6.78E-04
32GO:0009783: photosystem II antenna complex6.78E-04
33GO:0009515: granal stacked thylakoid6.78E-04
34GO:0009538: photosystem I reaction center1.00E-03
35GO:0030093: chloroplast photosystem I1.46E-03
36GO:0042170: plastid membrane1.46E-03
37GO:0000427: plastid-encoded plastid RNA polymerase complex1.46E-03
38GO:0005840: ribosome1.54E-03
39GO:0009508: plastid chromosome3.06E-03
40GO:0009531: secondary cell wall3.51E-03
41GO:0005775: vacuolar lumen3.51E-03
42GO:0016021: integral component of membrane4.37E-03
43GO:0009517: PSII associated light-harvesting complex II4.74E-03
44GO:0009544: chloroplast ATP synthase complex4.74E-03
45GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)7.56E-03
46GO:0042807: central vacuole1.09E-02
47GO:0009501: amyloplast1.27E-02
48GO:0005618: cell wall1.28E-02
49GO:0005811: lipid particle1.46E-02
50GO:0009295: nucleoid1.55E-02
51GO:0009505: plant-type cell wall1.56E-02
52GO:0042644: chloroplast nucleoid1.66E-02
53GO:0045298: tubulin complex1.66E-02
54GO:0030529: intracellular ribonucleoprotein complex1.74E-02
55GO:0000311: plastid large ribosomal subunit2.54E-02
56GO:0032040: small-subunit processome2.54E-02
57GO:0009705: plant-type vacuole membrane3.55E-02
58GO:0015935: small ribosomal subunit4.40E-02
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Gene type



Gene DE type