co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G75180

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0061157: mRNA destabilization	0.00E+00
2	GO:0090706: specification of plant organ position	0.00E+00
3	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
4	GO:0061635: regulation of protein complex stability	0.00E+00
5	GO:0016553: base conversion or substitution editing	0.00E+00
6	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
7	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
8	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
9	GO:0015979: photosynthesis	6.35E-14
10	GO:0009773: photosynthetic electron transport in photosystem I	5.20E-09
11	GO:0006000: fructose metabolic process	2.06E-08
12	GO:0006094: gluconeogenesis	8.77E-07
13	GO:0010207: photosystem II assembly	1.17E-06
14	GO:0042549: photosystem II stabilization	1.29E-06
15	GO:0030388: fructose 1,6-bisphosphate metabolic process	3.13E-06
16	GO:0009735: response to cytokinin	3.22E-06
17	GO:0006002: fructose 6-phosphate metabolic process	8.03E-06
18	GO:0010205: photoinhibition	1.51E-05
19	GO:0015994: chlorophyll metabolic process	4.61E-05
20	GO:0019253: reductive pentose-phosphate cycle	4.83E-05
21	GO:0018298: protein-chromophore linkage	6.49E-05
22	GO:0009768: photosynthesis, light harvesting in photosystem I	9.40E-05
23	GO:0010114: response to red light	1.59E-04
24	GO:0009644: response to high light intensity	1.82E-04
25	GO:0034337: RNA folding	2.60E-04
26	GO:0010450: inflorescence meristem growth	2.60E-04
27	GO:0000476: maturation of 4.5S rRNA	2.60E-04
28	GO:0000967: rRNA 5'-end processing	2.60E-04
29	GO:0043489: RNA stabilization	2.60E-04
30	GO:0043953: protein transport by the Tat complex	2.60E-04
31	GO:0071370: cellular response to gibberellin stimulus	2.60E-04
32	GO:0000481: maturation of 5S rRNA	2.60E-04
33	GO:0065002: intracellular protein transmembrane transport	2.60E-04
34	GO:0043609: regulation of carbon utilization	2.60E-04
35	GO:0010028: xanthophyll cycle	2.60E-04
36	GO:0009657: plastid organization	3.02E-04
37	GO:0010206: photosystem II repair	3.65E-04
38	GO:0034470: ncRNA processing	5.74E-04
39	GO:0035304: regulation of protein dephosphorylation	5.74E-04
40	GO:1900871: chloroplast mRNA modification	5.74E-04
41	GO:0034755: iron ion transmembrane transport	5.74E-04
42	GO:0016122: xanthophyll metabolic process	5.74E-04
43	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	5.74E-04
44	GO:0019684: photosynthesis, light reaction	5.84E-04
45	GO:0043085: positive regulation of catalytic activity	5.84E-04
46	GO:0009750: response to fructose	5.84E-04
47	GO:0018119: peptidyl-cysteine S-nitrosylation	5.84E-04
48	GO:0015995: chlorophyll biosynthetic process	5.93E-04
49	GO:0005986: sucrose biosynthetic process	7.57E-04
50	GO:0010218: response to far red light	7.64E-04
51	GO:0006518: peptide metabolic process	9.31E-04
52	GO:0006013: mannose metabolic process	9.31E-04
53	GO:0006696: ergosterol biosynthetic process	9.31E-04
54	GO:0045165: cell fate commitment	9.31E-04
55	GO:0005985: sucrose metabolic process	9.50E-04
56	GO:1902476: chloride transmembrane transport	1.33E-03
57	GO:0051513: regulation of monopolar cell growth	1.33E-03
58	GO:0009800: cinnamic acid biosynthetic process	1.33E-03
59	GO:2001141: regulation of RNA biosynthetic process	1.33E-03
60	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.33E-03
61	GO:0019676: ammonia assimilation cycle	1.78E-03
62	GO:0015976: carbon utilization	1.78E-03
63	GO:0010023: proanthocyanidin biosynthetic process	1.78E-03
64	GO:0045727: positive regulation of translation	1.78E-03
65	GO:2000038: regulation of stomatal complex development	1.78E-03
66	GO:0006546: glycine catabolic process	1.78E-03
67	GO:0006542: glutamine biosynthetic process	1.78E-03
68	GO:0009409: response to cold	1.96E-03
69	GO:0006096: glycolytic process	2.24E-03
70	GO:1902183: regulation of shoot apical meristem development	2.27E-03
71	GO:0010158: abaxial cell fate specification	2.27E-03
72	GO:0032876: negative regulation of DNA endoreduplication	2.27E-03
73	GO:0030308: negative regulation of cell growth	2.27E-03
74	GO:0043097: pyrimidine nucleoside salvage	2.27E-03
75	GO:0045038: protein import into chloroplast thylakoid membrane	2.27E-03
76	GO:0006461: protein complex assembly	2.27E-03
77	GO:0006810: transport	2.34E-03
78	GO:0000470: maturation of LSU-rRNA	2.80E-03
79	GO:1902456: regulation of stomatal opening	2.80E-03
80	GO:0006559: L-phenylalanine catabolic process	2.80E-03
81	GO:0006206: pyrimidine nucleobase metabolic process	2.80E-03
82	GO:0000741: karyogamy	2.80E-03
83	GO:0009635: response to herbicide	2.80E-03
84	GO:2000037: regulation of stomatal complex patterning	3.36E-03
85	GO:0009082: branched-chain amino acid biosynthetic process	3.36E-03
86	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	3.36E-03
87	GO:0009099: valine biosynthetic process	3.36E-03
88	GO:0010019: chloroplast-nucleus signaling pathway	3.36E-03
89	GO:0009772: photosynthetic electron transport in photosystem II	3.97E-03
90	GO:0006821: chloride transport	3.97E-03
91	GO:0009645: response to low light intensity stimulus	3.97E-03
92	GO:0042128: nitrate assimilation	4.56E-03
93	GO:0006402: mRNA catabolic process	4.60E-03
94	GO:0009642: response to light intensity	4.60E-03
95	GO:0009850: auxin metabolic process	4.60E-03
96	GO:0032508: DNA duplex unwinding	4.60E-03
97	GO:0010492: maintenance of shoot apical meristem identity	4.60E-03
98	GO:0009231: riboflavin biosynthetic process	4.60E-03
99	GO:0010093: specification of floral organ identity	5.27E-03
100	GO:0009699: phenylpropanoid biosynthetic process	5.27E-03
101	GO:0009932: cell tip growth	5.27E-03
102	GO:0071482: cellular response to light stimulus	5.27E-03
103	GO:0009097: isoleucine biosynthetic process	5.27E-03
104	GO:0032544: plastid translation	5.27E-03
105	GO:0007623: circadian rhythm	5.68E-03
106	GO:0009451: RNA modification	5.85E-03
107	GO:0009051: pentose-phosphate shunt, oxidative branch	5.98E-03
108	GO:0009821: alkaloid biosynthetic process	5.98E-03
109	GO:0090305: nucleic acid phosphodiester bond hydrolysis	5.98E-03
110	GO:0006098: pentose-phosphate shunt	5.98E-03
111	GO:2000024: regulation of leaf development	5.98E-03
112	GO:0048507: meristem development	5.98E-03
113	GO:0000373: Group II intron splicing	5.98E-03
114	GO:0009638: phototropism	6.71E-03
115	GO:0009637: response to blue light	6.74E-03
116	GO:0006949: syncytium formation	7.47E-03
117	GO:0009299: mRNA transcription	7.47E-03
118	GO:0046686: response to cadmium ion	8.18E-03
119	GO:0009698: phenylpropanoid metabolic process	8.27E-03
120	GO:0009089: lysine biosynthetic process via diaminopimelate	8.27E-03
121	GO:0006879: cellular iron ion homeostasis	8.27E-03
122	GO:0006352: DNA-templated transcription, initiation	8.27E-03
123	GO:0008361: regulation of cell size	9.09E-03
124	GO:0015706: nitrate transport	9.09E-03
125	GO:0005983: starch catabolic process	9.09E-03
126	GO:0009725: response to hormone	9.94E-03
127	GO:0009767: photosynthetic electron transport chain	9.94E-03
128	GO:0006006: glucose metabolic process	9.94E-03
129	GO:2000028: regulation of photoperiodism, flowering	9.94E-03
130	GO:0018107: peptidyl-threonine phosphorylation	9.94E-03
131	GO:0009718: anthocyanin-containing compound biosynthetic process	9.94E-03
132	GO:0009933: meristem structural organization	1.08E-02
133	GO:0010167: response to nitrate	1.17E-02
134	GO:0010053: root epidermal cell differentiation	1.17E-02
135	GO:0009585: red, far-red light phototransduction	1.18E-02
136	GO:0009723: response to ethylene	1.19E-02
137	GO:0006636: unsaturated fatty acid biosynthetic process	1.27E-02
138	GO:0009944: polarity specification of adaxial/abaxial axis	1.36E-02
139	GO:0006418: tRNA aminoacylation for protein translation	1.46E-02
140	GO:0061077: chaperone-mediated protein folding	1.56E-02
141	GO:0009740: gibberellic acid mediated signaling pathway	1.58E-02
142	GO:0010017: red or far-red light signaling pathway	1.67E-02
143	GO:0019748: secondary metabolic process	1.67E-02
144	GO:0006396: RNA processing	1.73E-02
145	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.77E-02
146	GO:0006284: base-excision repair	1.88E-02
147	GO:0016117: carotenoid biosynthetic process	1.99E-02
148	GO:0042631: cellular response to water deprivation	2.11E-02
149	GO:0080022: primary root development	2.11E-02
150	GO:0000413: protein peptidyl-prolyl isomerization	2.11E-02
151	GO:0009958: positive gravitropism	2.22E-02
152	GO:0010154: fruit development	2.22E-02
153	GO:0006662: glycerol ether metabolic process	2.22E-02
154	GO:0009058: biosynthetic process	2.22E-02
155	GO:0010197: polar nucleus fusion	2.22E-02
156	GO:0006397: mRNA processing	2.25E-02
157	GO:0008152: metabolic process	2.41E-02
158	GO:0009749: response to glucose	2.46E-02
159	GO:0010193: response to ozone	2.58E-02
160	GO:0030163: protein catabolic process	2.83E-02
161	GO:0010090: trichome morphogenesis	2.83E-02
162	GO:0009567: double fertilization forming a zygote and endosperm	2.96E-02
163	GO:0009828: plant-type cell wall loosening	2.96E-02
164	GO:0071805: potassium ion transmembrane transport	3.09E-02
165	GO:0009739: response to gibberellin	3.25E-02
166	GO:0001666: response to hypoxia	3.35E-02
167	GO:0010027: thylakoid membrane organization	3.35E-02
168	GO:0006412: translation	3.43E-02
169	GO:0009651: response to salt stress	3.51E-02
170	GO:0042742: defense response to bacterium	3.52E-02
171	GO:0006979: response to oxidative stress	3.56E-02
172	GO:0016311: dephosphorylation	3.91E-02
173	GO:0009737: response to abscisic acid	4.05E-02
174	GO:0048481: plant ovule development	4.05E-02
175	GO:0009826: unidimensional cell growth	4.31E-02
176	GO:0006499: N-terminal protein myristoylation	4.34E-02
177	GO:0009611: response to wounding	4.47E-02
178	GO:0009658: chloroplast organization	4.48E-02
179	GO:0009631: cold acclimation	4.49E-02
180	GO:0007568: aging	4.49E-02
181	GO:0009853: photorespiration	4.79E-02
182	GO:0045087: innate immune response	4.79E-02
183	GO:0034599: cellular response to oxidative stress	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
2	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
3	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
4	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
5	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
6	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
7	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
8	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
9	GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity	0.00E+00
10	GO:0008974: phosphoribulokinase activity	0.00E+00
11	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
12	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
13	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
14	GO:0046905: phytoene synthase activity	0.00E+00
15	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
16	GO:0008266: poly(U) RNA binding	1.17E-06
17	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	3.13E-06
18	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	3.13E-06
19	GO:0019843: rRNA binding	8.11E-06
20	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.76E-05
21	GO:0016168: chlorophyll binding	4.33E-05
22	GO:0031409: pigment binding	6.88E-05
23	GO:0005528: FK506 binding	8.09E-05
24	GO:0004332: fructose-bisphosphate aldolase activity	1.07E-04
25	GO:0046906: tetrapyrrole binding	2.60E-04
26	GO:0052638: indole-3-butyrate beta-glucosyltransferase activity	2.60E-04
27	GO:0010242: oxygen evolving activity	2.60E-04
28	GO:0003984: acetolactate synthase activity	2.60E-04
29	GO:0009671: nitrate:proton symporter activity	2.60E-04
30	GO:0051996: squalene synthase activity	2.60E-04
31	GO:0045485: omega-6 fatty acid desaturase activity	2.60E-04
32	GO:0005094: Rho GDP-dissociation inhibitor activity	5.74E-04
33	GO:0043425: bHLH transcription factor binding	5.74E-04
34	GO:0009977: proton motive force dependent protein transmembrane transporter activity	5.74E-04
35	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	5.74E-04
36	GO:0004047: aminomethyltransferase activity	5.74E-04
37	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	5.74E-04
38	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	5.74E-04
39	GO:0047746: chlorophyllase activity	5.74E-04
40	GO:0016868: intramolecular transferase activity, phosphotransferases	5.74E-04
41	GO:0004618: phosphoglycerate kinase activity	5.74E-04
42	GO:0016787: hydrolase activity	5.95E-04
43	GO:0045548: phenylalanine ammonia-lyase activity	9.31E-04
44	GO:0002161: aminoacyl-tRNA editing activity	9.31E-04
45	GO:0003935: GTP cyclohydrolase II activity	9.31E-04
46	GO:0016851: magnesium chelatase activity	1.33E-03
47	GO:0004737: pyruvate decarboxylase activity	1.78E-03
48	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.78E-03
49	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.78E-03
50	GO:0008453: alanine-glyoxylate transaminase activity	1.78E-03
51	GO:0016987: sigma factor activity	1.78E-03
52	GO:0005253: anion channel activity	1.78E-03
53	GO:0001053: plastid sigma factor activity	1.78E-03
54	GO:0003727: single-stranded RNA binding	1.82E-03
55	GO:0008725: DNA-3-methyladenine glycosylase activity	2.27E-03
56	GO:0004356: glutamate-ammonia ligase activity	2.27E-03
57	GO:0030976: thiamine pyrophosphate binding	2.80E-03
58	GO:2001070: starch binding	2.80E-03
59	GO:0005247: voltage-gated chloride channel activity	2.80E-03
60	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.36E-03
61	GO:0004849: uridine kinase activity	3.36E-03
62	GO:0004559: alpha-mannosidase activity	3.36E-03
63	GO:0019899: enzyme binding	3.97E-03
64	GO:0003735: structural constituent of ribosome	4.53E-03
65	GO:0004564: beta-fructofuranosidase activity	4.60E-03
66	GO:0004575: sucrose alpha-glucosidase activity	6.71E-03
67	GO:0005381: iron ion transmembrane transporter activity	6.71E-03
68	GO:0016844: strictosidine synthase activity	6.71E-03
69	GO:0015112: nitrate transmembrane transporter activity	6.71E-03
70	GO:0003723: RNA binding	6.83E-03
71	GO:0008047: enzyme activator activity	7.47E-03
72	GO:0004185: serine-type carboxypeptidase activity	8.70E-03
73	GO:0000049: tRNA binding	9.09E-03
74	GO:0051537: 2 iron, 2 sulfur cluster binding	9.42E-03
75	GO:0004565: beta-galactosidase activity	9.94E-03
76	GO:0004089: carbonate dehydratase activity	9.94E-03
77	GO:0031072: heat shock protein binding	9.94E-03
78	GO:0005515: protein binding	1.08E-02
79	GO:0008146: sulfotransferase activity	1.17E-02
80	GO:0016298: lipase activity	1.22E-02
81	GO:0015079: potassium ion transmembrane transporter activity	1.46E-02
82	GO:0004707: MAP kinase activity	1.56E-02
83	GO:0004176: ATP-dependent peptidase activity	1.56E-02
84	GO:0046872: metal ion binding	1.70E-02
85	GO:0022891: substrate-specific transmembrane transporter activity	1.77E-02
86	GO:0003756: protein disulfide isomerase activity	1.88E-02
87	GO:0004812: aminoacyl-tRNA ligase activity	1.99E-02
88	GO:0047134: protein-disulfide reductase activity	1.99E-02
89	GO:0004791: thioredoxin-disulfide reductase activity	2.34E-02
90	GO:0050662: coenzyme binding	2.34E-02
91	GO:0048038: quinone binding	2.58E-02
92	GO:0004518: nuclease activity	2.70E-02
93	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.83E-02
94	GO:0008483: transaminase activity	3.09E-02
95	GO:0005509: calcium ion binding	3.13E-02
96	GO:0042802: identical protein binding	3.69E-02
97	GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding	3.91E-02
98	GO:0008236: serine-type peptidase activity	3.91E-02
99	GO:0015238: drug transmembrane transporter activity	4.20E-02
100	GO:0005096: GTPase activator activity	4.20E-02
101	GO:0004222: metalloendopeptidase activity	4.34E-02
102	GO:0030145: manganese ion binding	4.49E-02
103	GO:0000987: core promoter proximal region sequence-specific DNA binding	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0043235: receptor complex	0.00E+00
2	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
3	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
4	GO:0009535: chloroplast thylakoid membrane	1.06E-40
5	GO:0009507: chloroplast	1.28E-38
6	GO:0009534: chloroplast thylakoid	1.03E-29
7	GO:0009570: chloroplast stroma	1.70E-23
8	GO:0009543: chloroplast thylakoid lumen	1.15E-20
9	GO:0009941: chloroplast envelope	4.88E-19
10	GO:0009579: thylakoid	2.06E-18
11	GO:0030095: chloroplast photosystem II	1.14E-14
12	GO:0009523: photosystem II	1.13E-08
13	GO:0010287: plastoglobule	4.06E-07
14	GO:0031977: thylakoid lumen	4.38E-07
15	GO:0009654: photosystem II oxygen evolving complex	3.17E-06
16	GO:0009533: chloroplast stromal thylakoid	3.64E-06
17	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.12E-05
18	GO:0019898: extrinsic component of membrane	1.59E-05
19	GO:0009522: photosystem I	2.46E-04
20	GO:0031361: integral component of thylakoid membrane	2.60E-04
21	GO:0009782: photosystem I antenna complex	2.60E-04
22	GO:0009344: nitrite reductase complex [NAD(P)H]	2.60E-04
23	GO:0009547: plastid ribosome	2.60E-04
24	GO:0016020: membrane	3.47E-04
25	GO:0010319: stromule	4.15E-04
26	GO:0030529: intracellular ribonucleoprotein complex	4.82E-04
27	GO:0080085: signal recognition particle, chloroplast targeting	5.74E-04
28	GO:0031969: chloroplast membrane	6.09E-04
29	GO:0048046: apoplast	8.46E-04
30	GO:0000312: plastid small ribosomal subunit	8.52E-04
31	GO:0033281: TAT protein transport complex	9.31E-04
32	GO:0010007: magnesium chelatase complex	9.31E-04
33	GO:0030076: light-harvesting complex	9.50E-04
34	GO:0005775: vacuolar lumen	1.33E-03
35	GO:0034707: chloride channel complex	2.80E-03
36	GO:0009706: chloroplast inner membrane	2.83E-03
37	GO:0009538: photosystem I reaction center	4.60E-03
38	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	5.27E-03
39	GO:0042644: chloroplast nucleoid	5.98E-03
40	GO:0005763: mitochondrial small ribosomal subunit	5.98E-03
41	GO:0032040: small-subunit processome	9.09E-03
42	GO:0000311: plastid large ribosomal subunit	9.09E-03
43	GO:0009508: plastid chromosome	9.94E-03
44	GO:0005840: ribosome	1.23E-02
45	GO:0042651: thylakoid membrane	1.46E-02
46	GO:0005623: cell	2.16E-02
47	GO:0043231: intracellular membrane-bounded organelle	2.41E-02
48	GO:0009295: nucleoid	3.09E-02
49	GO:0022626: cytosolic ribosome	4.12E-02
50	GO:0000325: plant-type vacuole	4.49E-02
51	GO:0015934: large ribosomal subunit	4.49E-02
52	GO:0009505: plant-type cell wall	4.87E-02