co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G74960

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905157: positive regulation of photosynthesis	0.00E+00
2	GO:0045014: negative regulation of transcription by glucose	0.00E+00
3	GO:0007172: signal complex assembly	0.00E+00
4	GO:0045176: apical protein localization	0.00E+00
5	GO:0090627: plant epidermal cell differentiation	0.00E+00
6	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
7	GO:0016126: sterol biosynthetic process	2.08E-05
8	GO:0034757: negative regulation of iron ion transport	5.34E-05
9	GO:0015936: coenzyme A metabolic process	5.34E-05
10	GO:0015969: guanosine tetraphosphate metabolic process	5.34E-05
11	GO:0010480: microsporocyte differentiation	5.34E-05
12	GO:0043609: regulation of carbon utilization	5.34E-05
13	GO:0009934: regulation of meristem structural organization	9.37E-05
14	GO:0010271: regulation of chlorophyll catabolic process	1.30E-04
15	GO:0090342: regulation of cell aging	1.30E-04
16	GO:0006000: fructose metabolic process	2.22E-04
17	GO:0080117: secondary growth	2.22E-04
18	GO:0071230: cellular response to amino acid stimulus	2.22E-04
19	GO:0010305: leaf vascular tissue pattern formation	2.81E-04
20	GO:0051639: actin filament network formation	3.25E-04
21	GO:0048825: cotyledon development	3.25E-04
22	GO:0051764: actin crosslink formation	4.35E-04
23	GO:0051205: protein insertion into membrane	4.35E-04
24	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	4.35E-04
25	GO:0071805: potassium ion transmembrane transport	4.47E-04
26	GO:0045038: protein import into chloroplast thylakoid membrane	5.52E-04
27	GO:0010304: PSII associated light-harvesting complex II catabolic process	6.76E-04
28	GO:0048827: phyllome development	6.76E-04
29	GO:0042549: photosystem II stabilization	6.76E-04
30	GO:0009913: epidermal cell differentiation	6.76E-04
31	GO:0048831: regulation of shoot system development	6.76E-04
32	GO:0009643: photosynthetic acclimation	6.76E-04
33	GO:0000160: phosphorelay signal transduction system	6.77E-04
34	GO:0009910: negative regulation of flower development	7.44E-04
35	GO:0048509: regulation of meristem development	8.05E-04
36	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	9.40E-04
37	GO:1900056: negative regulation of leaf senescence	9.40E-04
38	GO:0048437: floral organ development	9.40E-04
39	GO:0048564: photosystem I assembly	1.08E-03
40	GO:0006002: fructose 6-phosphate metabolic process	1.23E-03
41	GO:0006813: potassium ion transport	1.37E-03
42	GO:0048507: meristem development	1.38E-03
43	GO:0010206: photosystem II repair	1.38E-03
44	GO:0034765: regulation of ion transmembrane transport	1.38E-03
45	GO:0000373: Group II intron splicing	1.38E-03
46	GO:0048589: developmental growth	1.38E-03
47	GO:0010205: photoinhibition	1.54E-03
48	GO:0009086: methionine biosynthetic process	1.54E-03
49	GO:0010380: regulation of chlorophyll biosynthetic process	1.54E-03
50	GO:0046856: phosphatidylinositol dephosphorylation	1.88E-03
51	GO:0006816: calcium ion transport	1.88E-03
52	GO:1903507: negative regulation of nucleic acid-templated transcription	1.88E-03
53	GO:0048229: gametophyte development	1.88E-03
54	GO:0018105: peptidyl-serine phosphorylation	1.99E-03
55	GO:0005983: starch catabolic process	2.06E-03
56	GO:0010152: pollen maturation	2.06E-03
57	GO:0018107: peptidyl-threonine phosphorylation	2.25E-03
58	GO:0010075: regulation of meristem growth	2.25E-03
59	GO:0010229: inflorescence development	2.25E-03
60	GO:0010540: basipetal auxin transport	2.43E-03
61	GO:0009266: response to temperature stimulus	2.43E-03
62	GO:0009416: response to light stimulus	2.78E-03
63	GO:0019762: glucosinolate catabolic process	2.83E-03
64	GO:0009611: response to wounding	2.86E-03
65	GO:0035556: intracellular signal transduction	2.98E-03
66	GO:0051017: actin filament bundle assembly	3.03E-03
67	GO:0006289: nucleotide-excision repair	3.03E-03
68	GO:2000377: regulation of reactive oxygen species metabolic process	3.03E-03
69	GO:0008299: isoprenoid biosynthetic process	3.24E-03
70	GO:0006874: cellular calcium ion homeostasis	3.24E-03
71	GO:0007623: circadian rhythm	3.30E-03
72	GO:0010017: red or far-red light signaling pathway	3.68E-03
73	GO:2000022: regulation of jasmonic acid mediated signaling pathway	3.68E-03
74	GO:0071215: cellular response to abscisic acid stimulus	3.90E-03
75	GO:0048443: stamen development	4.13E-03
76	GO:0070417: cellular response to cold	4.36E-03
77	GO:0048653: anther development	4.60E-03
78	GO:0042391: regulation of membrane potential	4.60E-03
79	GO:0010087: phloem or xylem histogenesis	4.60E-03
80	GO:0071472: cellular response to salt stress	4.84E-03
81	GO:0019252: starch biosynthetic process	5.34E-03
82	GO:0009630: gravitropism	5.86E-03
83	GO:0030163: protein catabolic process	6.12E-03
84	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	6.52E-03
85	GO:0046777: protein autophosphorylation	6.74E-03
86	GO:0009911: positive regulation of flower development	7.22E-03
87	GO:0010027: thylakoid membrane organization	7.22E-03
88	GO:0010029: regulation of seed germination	7.50E-03
89	GO:0006499: N-terminal protein myristoylation	9.30E-03
90	GO:0048364: root development	9.71E-03
91	GO:0009753: response to jasmonic acid	9.99E-03
92	GO:0009867: jasmonic acid mediated signaling pathway	1.02E-02
93	GO:0045087: innate immune response	1.02E-02
94	GO:0009640: photomorphogenesis	1.23E-02
95	GO:0009636: response to toxic substance	1.33E-02
96	GO:0031347: regulation of defense response	1.40E-02
97	GO:0009908: flower development	1.50E-02
98	GO:0009736: cytokinin-activated signaling pathway	1.51E-02
99	GO:0009909: regulation of flower development	1.63E-02
100	GO:0009737: response to abscisic acid	1.78E-02
101	GO:0055085: transmembrane transport	2.11E-02
102	GO:0009845: seed germination	2.41E-02
103	GO:0009790: embryo development	2.55E-02
104	GO:0006508: proteolysis	2.81E-02
105	GO:0010150: leaf senescence	2.87E-02
106	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	3.11E-02
107	GO:0010468: regulation of gene expression	3.25E-02
108	GO:0030154: cell differentiation	3.65E-02
109	GO:0009658: chloroplast organization	3.91E-02
110	GO:0006970: response to osmotic stress	4.12E-02

Rank	GO Term	Adjusted P value
1	GO:0010303: limit dextrinase activity	0.00E+00
2	GO:0051060: pullulanase activity	0.00E+00
3	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
4	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
5	GO:0004506: squalene monooxygenase activity	3.07E-06
6	GO:0050139: nicotinate-N-glucosyltransferase activity	5.34E-05
7	GO:0004420: hydroxymethylglutaryl-CoA reductase (NADPH) activity	5.34E-05
8	GO:0042282: hydroxymethylglutaryl-CoA reductase activity	5.34E-05
9	GO:0008066: glutamate receptor activity	5.34E-05
10	GO:0047150: betaine-homocysteine S-methyltransferase activity	5.34E-05
11	GO:0005524: ATP binding	6.35E-05
12	GO:0008898: S-adenosylmethionine-homocysteine S-methyltransferase activity	1.30E-04
13	GO:0009884: cytokinin receptor activity	1.30E-04
14	GO:0019172: glyoxalase III activity	1.30E-04
15	GO:0008728: GTP diphosphokinase activity	1.30E-04
16	GO:0015079: potassium ion transmembrane transporter activity	1.51E-04
17	GO:0033612: receptor serine/threonine kinase binding	1.67E-04
18	GO:0004180: carboxypeptidase activity	2.22E-04
19	GO:0008253: 5'-nucleotidase activity	2.22E-04
20	GO:0004148: dihydrolipoyl dehydrogenase activity	2.22E-04
21	GO:0016805: dipeptidase activity	2.22E-04
22	GO:0005034: osmosensor activity	2.22E-04
23	GO:0019201: nucleotide kinase activity	3.25E-04
24	GO:0022890: inorganic cation transmembrane transporter activity	3.25E-04
25	GO:0010011: auxin binding	4.35E-04
26	GO:0070628: proteasome binding	4.35E-04
27	GO:0042802: identical protein binding	5.02E-04
28	GO:0005515: protein binding	6.23E-04
29	GO:2001070: starch binding	6.76E-04
30	GO:0031593: polyubiquitin binding	6.76E-04
31	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	6.76E-04
32	GO:0004556: alpha-amylase activity	6.76E-04
33	GO:0004462: lactoylglutathione lyase activity	6.76E-04
34	GO:0050660: flavin adenine dinucleotide binding	7.70E-04
35	GO:0005242: inward rectifier potassium channel activity	8.05E-04
36	GO:0004017: adenylate kinase activity	8.05E-04
37	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	8.05E-04
38	GO:0019900: kinase binding	8.05E-04
39	GO:0016301: kinase activity	1.19E-03
40	GO:0030234: enzyme regulator activity	1.71E-03
41	GO:0004673: protein histidine kinase activity	1.71E-03
42	GO:0015386: potassium:proton antiporter activity	1.88E-03
43	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	2.06E-03
44	GO:0000155: phosphorelay sensor kinase activity	2.25E-03
45	GO:0005262: calcium channel activity	2.25E-03
46	GO:0008081: phosphoric diester hydrolase activity	2.25E-03
47	GO:0005217: intracellular ligand-gated ion channel activity	2.63E-03
48	GO:0004970: ionotropic glutamate receptor activity	2.63E-03
49	GO:0043130: ubiquitin binding	3.03E-03
50	GO:0003714: transcription corepressor activity	3.03E-03
51	GO:0043424: protein histidine kinase binding	3.24E-03
52	GO:0004707: MAP kinase activity	3.46E-03
53	GO:0004176: ATP-dependent peptidase activity	3.46E-03
54	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.19E-03
55	GO:0005249: voltage-gated potassium channel activity	4.60E-03
56	GO:0030551: cyclic nucleotide binding	4.60E-03
57	GO:0015299: solute:proton antiporter activity	5.09E-03
58	GO:0000156: phosphorelay response regulator activity	6.12E-03
59	GO:0051015: actin filament binding	6.12E-03
60	GO:0003684: damaged DNA binding	6.39E-03
61	GO:0008483: transaminase activity	6.66E-03
62	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	6.66E-03
63	GO:0008237: metallopeptidase activity	6.66E-03
64	GO:0009931: calcium-dependent protein serine/threonine kinase activity	7.79E-03
65	GO:0004683: calmodulin-dependent protein kinase activity	8.09E-03
66	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	8.68E-03
67	GO:0004222: metalloendopeptidase activity	9.30E-03
68	GO:0050897: cobalt ion binding	9.61E-03
69	GO:0003746: translation elongation factor activity	1.02E-02
70	GO:0050661: NADP binding	1.12E-02
71	GO:0043621: protein self-association	1.30E-02
72	GO:0008289: lipid binding	1.30E-02
73	GO:0004674: protein serine/threonine kinase activity	1.46E-02
74	GO:0080043: quercetin 3-O-glucosyltransferase activity	1.82E-02
75	GO:0080044: quercetin 7-O-glucosyltransferase activity	1.82E-02
76	GO:0003779: actin binding	1.90E-02
77	GO:0005507: copper ion binding	2.36E-02
78	GO:0004252: serine-type endopeptidase activity	2.46E-02
79	GO:0005525: GTP binding	2.73E-02
80	GO:0005509: calcium ion binding	3.10E-02
81	GO:0008194: UDP-glycosyltransferase activity	3.11E-02
82	GO:0004672: protein kinase activity	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0009507: chloroplast	2.73E-04
3	GO:0032432: actin filament bundle	3.25E-04
4	GO:0005886: plasma membrane	1.43E-03
5	GO:0005884: actin filament	1.88E-03
6	GO:0005789: endoplasmic reticulum membrane	2.48E-03
7	GO:0009534: chloroplast thylakoid	3.53E-03
8	GO:0009535: chloroplast thylakoid membrane	4.42E-03
9	GO:0005770: late endosome	4.84E-03
10	GO:0031969: chloroplast membrane	6.31E-03
11	GO:0030529: intracellular ribonucleoprotein complex	7.22E-03
12	GO:0000325: plant-type vacuole	9.61E-03
13	GO:0005747: mitochondrial respiratory chain complex I	1.74E-02
14	GO:0009579: thylakoid	1.98E-02
15	GO:0005759: mitochondrial matrix	2.68E-02
16	GO:0009505: plant-type cell wall	4.20E-02
17	GO:0016021: integral component of membrane	4.26E-02
18	GO:0009941: chloroplast envelope	4.74E-02