Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G74470

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0016553: base conversion or substitution editing0.00E+00
2GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
3GO:0042820: vitamin B6 catabolic process0.00E+00
4GO:0018023: peptidyl-lysine trimethylation0.00E+00
5GO:0006399: tRNA metabolic process0.00E+00
6GO:0019323: pentose catabolic process0.00E+00
7GO:1901918: negative regulation of exoribonuclease activity0.00E+00
8GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
9GO:2000121: regulation of removal of superoxide radicals0.00E+00
10GO:0042821: pyridoxal biosynthetic process0.00E+00
11GO:0005996: monosaccharide metabolic process0.00E+00
12GO:0015979: photosynthesis7.94E-23
13GO:0015995: chlorophyll biosynthetic process1.28E-15
14GO:0009773: photosynthetic electron transport in photosystem I1.26E-08
15GO:0090391: granum assembly3.73E-08
16GO:0010207: photosystem II assembly4.13E-08
17GO:0010027: thylakoid membrane organization1.35E-07
18GO:0042254: ribosome biogenesis1.39E-07
19GO:0009735: response to cytokinin1.45E-07
20GO:0009409: response to cold4.42E-06
21GO:0009772: photosynthetic electron transport in photosystem II6.35E-06
22GO:0010196: nonphotochemical quenching6.35E-06
23GO:0006412: translation8.79E-06
24GO:0032544: plastid translation1.38E-05
25GO:0009658: chloroplast organization1.82E-05
26GO:0006783: heme biosynthetic process1.91E-05
27GO:0006782: protoporphyrinogen IX biosynthetic process3.33E-05
28GO:2001141: regulation of RNA biosynthetic process3.75E-05
29GO:0009052: pentose-phosphate shunt, non-oxidative branch3.75E-05
30GO:0006546: glycine catabolic process6.70E-05
31GO:0010037: response to carbon dioxide6.70E-05
32GO:0015976: carbon utilization6.70E-05
33GO:0009765: photosynthesis, light harvesting6.70E-05
34GO:2000122: negative regulation of stomatal complex development6.70E-05
35GO:0042742: defense response to bacterium1.75E-04
36GO:0034599: cellular response to oxidative stress1.92E-04
37GO:0010019: chloroplast-nucleus signaling pathway2.07E-04
38GO:0010114: response to red light2.73E-04
39GO:0000413: protein peptidyl-prolyl isomerization3.09E-04
40GO:0046467: membrane lipid biosynthetic process3.24E-04
41GO:0043489: RNA stabilization3.24E-04
42GO:0044262: cellular carbohydrate metabolic process3.24E-04
43GO:1904966: positive regulation of vitamin E biosynthetic process3.24E-04
44GO:1904964: positive regulation of phytol biosynthetic process3.24E-04
45GO:0042371: vitamin K biosynthetic process3.24E-04
46GO:0071461: cellular response to redox state3.24E-04
47GO:1902458: positive regulation of stomatal opening3.24E-04
48GO:0034337: RNA folding3.24E-04
49GO:0071588: hydrogen peroxide mediated signaling pathway3.24E-04
50GO:0010729: positive regulation of hydrogen peroxide biosynthetic process3.24E-04
51GO:0009443: pyridoxal 5'-phosphate salvage3.24E-04
52GO:0009657: plastid organization4.17E-04
53GO:0071482: cellular response to light stimulus4.17E-04
54GO:0010206: photosystem II repair5.01E-04
55GO:0055114: oxidation-reduction process5.36E-04
56GO:0018026: peptidyl-lysine monomethylation7.07E-04
57GO:0006729: tetrahydrobiopterin biosynthetic process7.07E-04
58GO:1903426: regulation of reactive oxygen species biosynthetic process7.07E-04
59GO:0030388: fructose 1,6-bisphosphate metabolic process7.07E-04
60GO:1902326: positive regulation of chlorophyll biosynthetic process7.07E-04
61GO:0080005: photosystem stoichiometry adjustment7.07E-04
62GO:0006352: DNA-templated transcription, initiation7.96E-04
63GO:0018119: peptidyl-cysteine S-nitrosylation7.96E-04
64GO:0019684: photosynthesis, light reaction7.96E-04
65GO:0018298: protein-chromophore linkage1.01E-03
66GO:0045493: xylan catabolic process1.15E-03
67GO:0006000: fructose metabolic process1.15E-03
68GO:0019253: reductive pentose-phosphate cycle1.16E-03
69GO:0009637: response to blue light1.35E-03
70GO:0006636: unsaturated fatty acid biosynthetic process1.44E-03
71GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.65E-03
72GO:0051513: regulation of monopolar cell growth1.65E-03
73GO:0071484: cellular response to light intensity1.65E-03
74GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity1.65E-03
75GO:0009768: photosynthesis, light harvesting in photosystem I1.76E-03
76GO:0006021: inositol biosynthetic process2.21E-03
77GO:0019464: glycine decarboxylation via glycine cleavage system2.21E-03
78GO:0045727: positive regulation of translation2.21E-03
79GO:0016117: carotenoid biosynthetic process2.71E-03
80GO:0016120: carotene biosynthetic process2.82E-03
81GO:0032543: mitochondrial translation2.82E-03
82GO:0010236: plastoquinone biosynthetic process2.82E-03
83GO:0045038: protein import into chloroplast thylakoid membrane2.82E-03
84GO:0031365: N-terminal protein amino acid modification2.82E-03
85GO:0016123: xanthophyll biosynthetic process2.82E-03
86GO:0034052: positive regulation of plant-type hypersensitive response2.82E-03
87GO:0015986: ATP synthesis coupled proton transport3.39E-03
88GO:0032973: amino acid export3.49E-03
89GO:0046855: inositol phosphate dephosphorylation3.49E-03
90GO:0042549: photosystem II stabilization3.49E-03
91GO:0006655: phosphatidylglycerol biosynthetic process3.49E-03
92GO:0000302: response to reactive oxygen species3.89E-03
93GO:1901259: chloroplast rRNA processing4.20E-03
94GO:0010555: response to mannitol4.20E-03
95GO:0071470: cellular response to osmotic stress4.20E-03
96GO:0042372: phylloquinone biosynthetic process4.20E-03
97GO:0080167: response to karrikin4.69E-03
98GO:0009769: photosynthesis, light harvesting in photosystem II4.95E-03
99GO:0009645: response to low light intensity stimulus4.95E-03
100GO:0006400: tRNA modification4.95E-03
101GO:0009395: phospholipid catabolic process4.95E-03
102GO:0043090: amino acid import4.95E-03
103GO:0010098: suspensor development4.95E-03
104GO:0042255: ribosome assembly5.76E-03
105GO:0043068: positive regulation of programmed cell death5.76E-03
106GO:0006353: DNA-templated transcription, termination5.76E-03
107GO:2000070: regulation of response to water deprivation5.76E-03
108GO:0048564: photosystem I assembly5.76E-03
109GO:0009819: drought recovery5.76E-03
110GO:0009642: response to light intensity5.76E-03
111GO:0009627: systemic acquired resistance6.29E-03
112GO:0017004: cytochrome complex assembly6.60E-03
113GO:0006002: fructose 6-phosphate metabolic process6.60E-03
114GO:0015996: chlorophyll catabolic process6.60E-03
115GO:0007186: G-protein coupled receptor signaling pathway6.60E-03
116GO:0010411: xyloglucan metabolic process6.63E-03
117GO:0009817: defense response to fungus, incompatible interaction7.35E-03
118GO:0080144: amino acid homeostasis7.48E-03
119GO:0006754: ATP biosynthetic process7.48E-03
120GO:0009245: lipid A biosynthetic process7.48E-03
121GO:0006633: fatty acid biosynthetic process7.61E-03
122GO:0010218: response to far red light8.11E-03
123GO:0010205: photoinhibition8.41E-03
124GO:0006779: porphyrin-containing compound biosynthetic process8.41E-03
125GO:0009631: cold acclimation8.51E-03
126GO:0010119: regulation of stomatal movement8.51E-03
127GO:0006949: syncytium formation9.37E-03
128GO:0006415: translational termination1.04E-02
129GO:0000272: polysaccharide catabolic process1.04E-02
130GO:0009089: lysine biosynthetic process via diaminopimelate1.04E-02
131GO:0016024: CDP-diacylglycerol biosynthetic process1.14E-02
132GO:0045037: protein import into chloroplast stroma1.14E-02
133GO:0006790: sulfur compound metabolic process1.14E-02
134GO:0010628: positive regulation of gene expression1.25E-02
135GO:0006006: glucose metabolic process1.25E-02
136GO:0009725: response to hormone1.25E-02
137GO:0006094: gluconeogenesis1.25E-02
138GO:0009767: photosynthetic electron transport chain1.25E-02
139GO:0005986: sucrose biosynthetic process1.25E-02
140GO:0010020: chloroplast fission1.36E-02
141GO:0019853: L-ascorbic acid biosynthetic process1.48E-02
142GO:0046854: phosphatidylinositol phosphorylation1.48E-02
143GO:0010167: response to nitrate1.48E-02
144GO:0019344: cysteine biosynthetic process1.72E-02
145GO:0000027: ribosomal large subunit assembly1.72E-02
146GO:0048511: rhythmic process1.97E-02
147GO:0061077: chaperone-mediated protein folding1.97E-02
148GO:0009269: response to desiccation1.97E-02
149GO:0009416: response to light stimulus2.01E-02
150GO:0009814: defense response, incompatible interaction2.10E-02
151GO:0016226: iron-sulfur cluster assembly2.10E-02
152GO:0006012: galactose metabolic process2.23E-02
153GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.23E-02
154GO:0006396: RNA processing2.39E-02
155GO:0045454: cell redox homeostasis2.47E-02
156GO:0042335: cuticle development2.65E-02
157GO:0042631: cellular response to water deprivation2.65E-02
158GO:0010182: sugar mediated signaling pathway2.80E-02
159GO:0042752: regulation of circadian rhythm2.95E-02
160GO:0006457: protein folding2.95E-02
161GO:0019252: starch biosynthetic process3.10E-02
162GO:0002229: defense response to oomycetes3.25E-02
163GO:0042744: hydrogen peroxide catabolic process3.31E-02
164GO:0032502: developmental process3.41E-02
165GO:0009828: plant-type cell wall loosening3.73E-02
166GO:0009451: RNA modification4.10E-02
167GO:0042128: nitrate assimilation4.57E-02
RankGO TermAdjusted P value
1GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
2GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
3GO:0045435: lycopene epsilon cyclase activity0.00E+00
4GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
5GO:0004853: uroporphyrinogen decarboxylase activity0.00E+00
6GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
7GO:0050421: nitrite reductase (NO-forming) activity0.00E+00
8GO:0046408: chlorophyll synthetase activity0.00E+00
9GO:0051738: xanthophyll binding0.00E+00
10GO:0047889: ferredoxin-nitrate reductase activity0.00E+00
11GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
12GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
13GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
14GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
15GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
16GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding0.00E+00
17GO:0048307: ferredoxin-nitrite reductase activity0.00E+00
18GO:0019843: rRNA binding8.13E-15
19GO:0003735: structural constituent of ribosome1.81E-08
20GO:0016851: magnesium chelatase activity1.80E-07
21GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.44E-06
22GO:0051920: peroxiredoxin activity3.96E-06
23GO:0016168: chlorophyll binding4.47E-06
24GO:0016209: antioxidant activity9.59E-06
25GO:0004659: prenyltransferase activity6.70E-05
26GO:0001053: plastid sigma factor activity6.70E-05
27GO:0016987: sigma factor activity6.70E-05
28GO:0008266: poly(U) RNA binding7.88E-05
29GO:0003959: NADPH dehydrogenase activity1.05E-04
30GO:0005509: calcium ion binding1.37E-04
31GO:0004130: cytochrome-c peroxidase activity1.52E-04
32GO:0045485: omega-6 fatty acid desaturase activity3.24E-04
33GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity3.24E-04
34GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.24E-04
35GO:0010347: L-galactose-1-phosphate phosphatase activity3.24E-04
36GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase7.07E-04
37GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity7.07E-04
38GO:0008967: phosphoglycolate phosphatase activity7.07E-04
39GO:0008883: glutamyl-tRNA reductase activity7.07E-04
40GO:0042389: omega-3 fatty acid desaturase activity7.07E-04
41GO:0010297: heteropolysaccharide binding7.07E-04
42GO:0004047: aminomethyltransferase activity7.07E-04
43GO:0052832: inositol monophosphate 3-phosphatase activity7.07E-04
44GO:0004750: ribulose-phosphate 3-epimerase activity7.07E-04
45GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity7.07E-04
46GO:0008934: inositol monophosphate 1-phosphatase activity7.07E-04
47GO:0016630: protochlorophyllide reductase activity7.07E-04
48GO:0052833: inositol monophosphate 4-phosphatase activity7.07E-04
49GO:0004089: carbonate dehydratase activity1.03E-03
50GO:0004751: ribose-5-phosphate isomerase activity1.15E-03
51GO:0070402: NADPH binding1.15E-03
52GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.15E-03
53GO:0004324: ferredoxin-NADP+ reductase activity1.15E-03
54GO:0010277: chlorophyllide a oxygenase [overall] activity1.15E-03
55GO:0031409: pigment binding1.44E-03
56GO:0005528: FK506 binding1.59E-03
57GO:0016149: translation release factor activity, codon specific1.65E-03
58GO:0004375: glycine dehydrogenase (decarboxylating) activity1.65E-03
59GO:0009044: xylan 1,4-beta-xylosidase activity2.21E-03
60GO:0043495: protein anchor2.21E-03
61GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.21E-03
62GO:0046556: alpha-L-arabinofuranosidase activity2.21E-03
63GO:0016279: protein-lysine N-methyltransferase activity2.21E-03
64GO:1990137: plant seed peroxidase activity2.21E-03
65GO:0022891: substrate-specific transmembrane transporter activity2.30E-03
66GO:0003727: single-stranded RNA binding2.50E-03
67GO:0046933: proton-transporting ATP synthase activity, rotational mechanism3.16E-03
68GO:0004601: peroxidase activity3.38E-03
69GO:0031177: phosphopantetheine binding3.49E-03
70GO:0042578: phosphoric ester hydrolase activity3.49E-03
71GO:0016688: L-ascorbate peroxidase activity3.49E-03
72GO:0016491: oxidoreductase activity3.76E-03
73GO:0000035: acyl binding4.20E-03
74GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity4.20E-03
75GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.20E-03
76GO:0019899: enzyme binding4.95E-03
77GO:0008235: metalloexopeptidase activity4.95E-03
78GO:0004033: aldo-keto reductase (NADP) activity5.76E-03
79GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process5.76E-03
80GO:0004034: aldose 1-epimerase activity5.76E-03
81GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water6.60E-03
82GO:0003747: translation release factor activity7.48E-03
83GO:0030234: enzyme regulator activity9.37E-03
84GO:0004177: aminopeptidase activity1.04E-02
85GO:0051539: 4 iron, 4 sulfur cluster binding1.06E-02
86GO:0050661: NADP binding1.06E-02
87GO:0031072: heat shock protein binding1.25E-02
88GO:0051537: 2 iron, 2 sulfur cluster binding1.31E-02
89GO:0016788: hydrolase activity, acting on ester bonds1.53E-02
90GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.63E-02
91GO:0003723: RNA binding1.63E-02
92GO:0003690: double-stranded DNA binding1.69E-02
93GO:0051536: iron-sulfur cluster binding1.72E-02
94GO:0043424: protein histidine kinase binding1.84E-02
95GO:0030570: pectate lyase activity2.23E-02
96GO:0003756: protein disulfide isomerase activity2.37E-02
97GO:0050662: coenzyme binding2.95E-02
98GO:0016853: isomerase activity2.95E-02
99GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.99E-02
100GO:0004872: receptor activity3.10E-02
101GO:0016762: xyloglucan:xyloglucosyl transferase activity3.25E-02
102GO:0009055: electron carrier activity3.49E-02
103GO:0003729: mRNA binding3.84E-02
104GO:0008237: metallopeptidase activity3.89E-02
105GO:0008483: transaminase activity3.89E-02
106GO:0016798: hydrolase activity, acting on glycosyl bonds4.75E-02
107GO:0008289: lipid binding4.80E-02
108GO:0046872: metal ion binding4.85E-02
RankGO TermAdjusted P value
1GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
2GO:0044391: ribosomal subunit0.00E+00
3GO:0009515: granal stacked thylakoid0.00E+00
4GO:0009507: chloroplast6.92E-91
5GO:0009535: chloroplast thylakoid membrane5.48E-58
6GO:0009579: thylakoid6.36E-48
7GO:0009534: chloroplast thylakoid6.10E-43
8GO:0009570: chloroplast stroma9.20E-42
9GO:0009941: chloroplast envelope2.34E-41
10GO:0009543: chloroplast thylakoid lumen1.42E-33
11GO:0031977: thylakoid lumen3.67E-23
12GO:0009654: photosystem II oxygen evolving complex3.81E-13
13GO:0030095: chloroplast photosystem II5.44E-12
14GO:0019898: extrinsic component of membrane1.22E-11
15GO:0005840: ribosome1.85E-11
16GO:0010319: stromule2.39E-09
17GO:0048046: apoplast4.25E-09
18GO:0010007: magnesium chelatase complex3.73E-08
19GO:0031969: chloroplast membrane3.25E-07
20GO:0010287: plastoglobule1.24E-06
21GO:0009706: chloroplast inner membrane1.06E-05
22GO:0009522: photosystem I2.63E-05
23GO:0009523: photosystem II3.03E-05
24GO:0000311: plastid large ribosomal subunit5.30E-05
25GO:0009517: PSII associated light-harvesting complex II6.70E-05
26GO:0042651: thylakoid membrane1.50E-04
27GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)1.52E-04
28GO:0009344: nitrite reductase complex [NAD(P)H]3.24E-04
29GO:0009547: plastid ribosome3.24E-04
30GO:0016020: membrane4.92E-04
31GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)5.01E-04
32GO:0042170: plastid membrane7.07E-04
33GO:0000427: plastid-encoded plastid RNA polymerase complex7.07E-04
34GO:0030093: chloroplast photosystem I7.07E-04
35GO:0009528: plastid inner membrane1.15E-03
36GO:0030076: light-harvesting complex1.29E-03
37GO:0022626: cytosolic ribosome1.48E-03
38GO:0005960: glycine cleavage complex1.65E-03
39GO:0009532: plastid stroma1.93E-03
40GO:0015935: small ribosomal subunit1.93E-03
41GO:0009544: chloroplast ATP synthase complex2.21E-03
42GO:0009527: plastid outer membrane2.21E-03
43GO:0009533: chloroplast stromal thylakoid4.95E-03
44GO:0009538: photosystem I reaction center5.76E-03
45GO:0005811: lipid particle6.60E-03
46GO:0009707: chloroplast outer membrane7.35E-03
47GO:0015934: large ribosomal subunit8.51E-03
48GO:0032040: small-subunit processome1.14E-02
49GO:0009508: plastid chromosome1.25E-02
50GO:0043234: protein complex1.60E-02
51GO:0009295: nucleoid3.89E-02
52GO:0030529: intracellular ribonucleoprotein complex4.23E-02
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Gene type



Gene DE type