co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G74370

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0034337: RNA folding	0.00E+00
2	GO:2000505: regulation of energy homeostasis	0.00E+00
3	GO:0002184: cytoplasmic translational termination	0.00E+00
4	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
5	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
6	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
7	GO:0033494: ferulate metabolic process	0.00E+00
8	GO:2000121: regulation of removal of superoxide radicals	0.00E+00
9	GO:0061635: regulation of protein complex stability	0.00E+00
10	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
11	GO:0016553: base conversion or substitution editing	0.00E+00
12	GO:0006399: tRNA metabolic process	0.00E+00
13	GO:0006412: translation	1.19E-14
14	GO:0032544: plastid translation	4.17E-13
15	GO:0042254: ribosome biogenesis	1.16E-09
16	GO:0015995: chlorophyll biosynthetic process	7.07E-08
17	GO:0010027: thylakoid membrane organization	1.90E-05
18	GO:0006518: peptide metabolic process	3.70E-05
19	GO:0010206: photosystem II repair	5.29E-05
20	GO:0015979: photosynthesis	5.45E-05
21	GO:0009773: photosynthetic electron transport in photosystem I	1.12E-04
22	GO:0009658: chloroplast organization	1.16E-04
23	GO:0042549: photosystem II stabilization	2.98E-04
24	GO:0006655: phosphatidylglycerol biosynthetic process	2.98E-04
25	GO:0006810: transport	3.68E-04
26	GO:0042372: phylloquinone biosynthetic process	3.98E-04
27	GO:1901259: chloroplast rRNA processing	3.98E-04
28	GO:0009735: response to cytokinin	4.43E-04
29	GO:1902458: positive regulation of stomatal opening	4.98E-04
30	GO:0071588: hydrogen peroxide mediated signaling pathway	4.98E-04
31	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	4.98E-04
32	GO:0000476: maturation of 4.5S rRNA	4.98E-04
33	GO:0000967: rRNA 5'-end processing	4.98E-04
34	GO:0043489: RNA stabilization	4.98E-04
35	GO:1904966: positive regulation of vitamin E biosynthetic process	4.98E-04
36	GO:0043266: regulation of potassium ion transport	4.98E-04
37	GO:0071370: cellular response to gibberellin stimulus	4.98E-04
38	GO:0000481: maturation of 5S rRNA	4.98E-04
39	GO:1904964: positive regulation of phytol biosynthetic process	4.98E-04
40	GO:0042371: vitamin K biosynthetic process	4.98E-04
41	GO:2000021: regulation of ion homeostasis	4.98E-04
42	GO:0009772: photosynthetic electron transport in photosystem II	5.11E-04
43	GO:0009409: response to cold	8.32E-04
44	GO:1903426: regulation of reactive oxygen species biosynthetic process	1.07E-03
45	GO:0034470: ncRNA processing	1.07E-03
46	GO:0010275: NAD(P)H dehydrogenase complex assembly	1.07E-03
47	GO:1902326: positive regulation of chlorophyll biosynthetic process	1.07E-03
48	GO:0019388: galactose catabolic process	1.07E-03
49	GO:1900871: chloroplast mRNA modification	1.07E-03
50	GO:0034755: iron ion transmembrane transport	1.07E-03
51	GO:0006782: protoporphyrinogen IX biosynthetic process	1.27E-03
52	GO:0019684: photosynthesis, light reaction	1.47E-03
53	GO:0009073: aromatic amino acid family biosynthetic process	1.47E-03
54	GO:0016024: CDP-diacylglycerol biosynthetic process	1.68E-03
55	GO:0006954: inflammatory response	1.75E-03
56	GO:0006013: mannose metabolic process	1.75E-03
57	GO:0045493: xylan catabolic process	1.75E-03
58	GO:2001295: malonyl-CoA biosynthetic process	1.75E-03
59	GO:0009767: photosynthetic electron transport chain	1.92E-03
60	GO:0006006: glucose metabolic process	1.92E-03
61	GO:0010207: photosystem II assembly	2.16E-03
62	GO:1902476: chloride transmembrane transport	2.54E-03
63	GO:0051513: regulation of monopolar cell growth	2.54E-03
64	GO:0080170: hydrogen peroxide transmembrane transport	2.54E-03
65	GO:0009226: nucleotide-sugar biosynthetic process	2.54E-03
66	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	2.54E-03
67	GO:0006424: glutamyl-tRNA aminoacylation	2.54E-03
68	GO:0009590: detection of gravity	2.54E-03
69	GO:0016556: mRNA modification	2.54E-03
70	GO:2001141: regulation of RNA biosynthetic process	2.54E-03
71	GO:0006636: unsaturated fatty acid biosynthetic process	2.70E-03
72	GO:0015976: carbon utilization	3.42E-03
73	GO:0019464: glycine decarboxylation via glycine cleavage system	3.42E-03
74	GO:0045727: positive regulation of translation	3.42E-03
75	GO:0015994: chlorophyll metabolic process	3.42E-03
76	GO:2000122: negative regulation of stomatal complex development	3.42E-03
77	GO:0030104: water homeostasis	3.42E-03
78	GO:0006546: glycine catabolic process	3.42E-03
79	GO:0010037: response to carbon dioxide	3.42E-03
80	GO:0061077: chaperone-mediated protein folding	3.64E-03
81	GO:0009793: embryo development ending in seed dormancy	3.64E-03
82	GO:0006633: fatty acid biosynthetic process	4.01E-03
83	GO:0010114: response to red light	4.23E-03
84	GO:0009107: lipoate biosynthetic process	4.38E-03
85	GO:0009247: glycolipid biosynthetic process	4.38E-03
86	GO:0034052: positive regulation of plant-type hypersensitive response	4.38E-03
87	GO:0032543: mitochondrial translation	4.38E-03
88	GO:0006564: L-serine biosynthetic process	4.38E-03
89	GO:0010236: plastoquinone biosynthetic process	4.38E-03
90	GO:0045038: protein import into chloroplast thylakoid membrane	4.38E-03
91	GO:0009306: protein secretion	4.74E-03
92	GO:0006751: glutathione catabolic process	5.43E-03
93	GO:0016554: cytidine to uridine editing	5.43E-03
94	GO:1902456: regulation of stomatal opening	5.43E-03
95	GO:0010190: cytochrome b6f complex assembly	5.43E-03
96	GO:0032973: amino acid export	5.43E-03
97	GO:0000741: karyogamy	5.43E-03
98	GO:0000413: protein peptidyl-prolyl isomerization	5.56E-03
99	GO:0009955: adaxial/abaxial pattern specification	6.56E-03
100	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	6.56E-03
101	GO:0010019: chloroplast-nucleus signaling pathway	6.56E-03
102	GO:0000302: response to reactive oxygen species	7.41E-03
103	GO:0043090: amino acid import	7.76E-03
104	GO:0006821: chloride transport	7.76E-03
105	GO:0010196: nonphotochemical quenching	7.76E-03
106	GO:0006400: tRNA modification	7.76E-03
107	GO:0048564: photosystem I assembly	9.03E-03
108	GO:0005978: glycogen biosynthetic process	9.03E-03
109	GO:0043068: positive regulation of programmed cell death	9.03E-03
110	GO:0019375: galactolipid biosynthetic process	9.03E-03
111	GO:0032508: DNA duplex unwinding	9.03E-03
112	GO:2000070: regulation of response to water deprivation	9.03E-03
113	GO:0010492: maintenance of shoot apical meristem identity	9.03E-03
114	GO:0009932: cell tip growth	1.04E-02
115	GO:0071482: cellular response to light stimulus	1.04E-02
116	GO:0009657: plastid organization	1.04E-02
117	GO:0017004: cytochrome complex assembly	1.04E-02
118	GO:0009051: pentose-phosphate shunt, oxidative branch	1.18E-02
119	GO:0009821: alkaloid biosynthetic process	1.18E-02
120	GO:0080144: amino acid homeostasis	1.18E-02
121	GO:0048507: meristem development	1.18E-02
122	GO:0006783: heme biosynthetic process	1.18E-02
123	GO:0010205: photoinhibition	1.33E-02
124	GO:0006779: porphyrin-containing compound biosynthetic process	1.33E-02
125	GO:1900865: chloroplast RNA modification	1.33E-02
126	GO:0018298: protein-chromophore linkage	1.41E-02
127	GO:0043069: negative regulation of programmed cell death	1.48E-02
128	GO:0009790: embryo development	1.58E-02
129	GO:0009631: cold acclimation	1.63E-02
130	GO:0010015: root morphogenesis	1.64E-02
131	GO:0045454: cell redox homeostasis	1.64E-02
132	GO:0009698: phenylpropanoid metabolic process	1.64E-02
133	GO:0009089: lysine biosynthetic process via diaminopimelate	1.64E-02
134	GO:0006415: translational termination	1.64E-02
135	GO:0006879: cellular iron ion homeostasis	1.64E-02
136	GO:0006352: DNA-templated transcription, initiation	1.64E-02
137	GO:0018119: peptidyl-cysteine S-nitrosylation	1.64E-02
138	GO:0009637: response to blue light	1.79E-02
139	GO:0015706: nitrate transport	1.81E-02
140	GO:0034599: cellular response to oxidative stress	1.87E-02
141	GO:0045490: pectin catabolic process	1.95E-02
142	GO:0030048: actin filament-based movement	1.98E-02
143	GO:0010628: positive regulation of gene expression	1.98E-02
144	GO:0009451: RNA modification	2.01E-02
145	GO:0005975: carbohydrate metabolic process	2.04E-02
146	GO:0030001: metal ion transport	2.04E-02
147	GO:0010143: cutin biosynthetic process	2.16E-02
148	GO:0010167: response to nitrate	2.34E-02
149	GO:0005985: sucrose metabolic process	2.34E-02
150	GO:0010030: positive regulation of seed germination	2.34E-02
151	GO:0000027: ribosomal large subunit assembly	2.72E-02
152	GO:0009664: plant-type cell wall organization	2.90E-02
153	GO:0055114: oxidation-reduction process	2.91E-02
154	GO:0006418: tRNA aminoacylation for protein translation	2.92E-02
155	GO:0009768: photosynthesis, light harvesting in photosystem I	2.92E-02
156	GO:0048511: rhythmic process	3.13E-02
157	GO:0009814: defense response, incompatible interaction	3.33E-02
158	GO:0006012: galactose metabolic process	3.55E-02
159	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	3.55E-02
160	GO:0006508: proteolysis	3.93E-02
161	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	3.99E-02
162	GO:0042631: cellular response to water deprivation	4.21E-02
163	GO:0080022: primary root development	4.21E-02
164	GO:0034220: ion transmembrane transport	4.21E-02
165	GO:0010197: polar nucleus fusion	4.44E-02
166	GO:0006396: RNA processing	4.55E-02
167	GO:0042752: regulation of circadian rhythm	4.68E-02
168	GO:0006814: sodium ion transport	4.68E-02
169	GO:0019252: starch biosynthetic process	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
2	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
3	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
4	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
5	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
6	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
7	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
8	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
9	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
10	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
11	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
12	GO:0019843: rRNA binding	1.66E-28
13	GO:0003735: structural constituent of ribosome	3.51E-18
14	GO:0005528: FK506 binding	3.42E-12
15	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.96E-12
16	GO:0016851: magnesium chelatase activity	5.78E-07
17	GO:0051920: peroxiredoxin activity	1.19E-05
18	GO:0016209: antioxidant activity	2.76E-05
19	GO:0008266: poly(U) RNA binding	1.98E-04
20	GO:0004130: cytochrome-c peroxidase activity	2.98E-04
21	GO:0008200: ion channel inhibitor activity	2.98E-04
22	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.98E-04
23	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	4.98E-04
24	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	4.98E-04
25	GO:0080132: fatty acid alpha-hydroxylase activity	4.98E-04
26	GO:0009671: nitrate:proton symporter activity	4.98E-04
27	GO:0004853: uroporphyrinogen decarboxylase activity	4.98E-04
28	GO:0045485: omega-6 fatty acid desaturase activity	4.98E-04
29	GO:0003839: gamma-glutamylcyclotransferase activity	1.07E-03
30	GO:0009977: proton motive force dependent protein transmembrane transporter activity	1.07E-03
31	GO:0004617: phosphoglycerate dehydrogenase activity	1.07E-03
32	GO:0016415: octanoyltransferase activity	1.07E-03
33	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	1.07E-03
34	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	1.07E-03
35	GO:0004614: phosphoglucomutase activity	1.07E-03
36	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	1.07E-03
37	GO:0017118: lipoyltransferase activity	1.07E-03
38	GO:0047746: chlorophyllase activity	1.07E-03
39	GO:0042389: omega-3 fatty acid desaturase activity	1.07E-03
40	GO:0016868: intramolecular transferase activity, phosphotransferases	1.07E-03
41	GO:0050734: hydroxycinnamoyltransferase activity	1.75E-03
42	GO:0002161: aminoacyl-tRNA editing activity	1.75E-03
43	GO:0004148: dihydrolipoyl dehydrogenase activity	1.75E-03
44	GO:0004075: biotin carboxylase activity	1.75E-03
45	GO:0008097: 5S rRNA binding	2.54E-03
46	GO:0008508: bile acid:sodium symporter activity	2.54E-03
47	GO:0004375: glycine dehydrogenase (decarboxylating) activity	2.54E-03
48	GO:0035250: UDP-galactosyltransferase activity	2.54E-03
49	GO:0016149: translation release factor activity, codon specific	2.54E-03
50	GO:0043023: ribosomal large subunit binding	2.54E-03
51	GO:0004222: metalloendopeptidase activity	2.56E-03
52	GO:0003723: RNA binding	2.60E-03
53	GO:0004252: serine-type endopeptidase activity	3.32E-03
54	GO:0001053: plastid sigma factor activity	3.42E-03
55	GO:0004345: glucose-6-phosphate dehydrogenase activity	3.42E-03
56	GO:0016987: sigma factor activity	3.42E-03
57	GO:0009044: xylan 1,4-beta-xylosidase activity	3.42E-03
58	GO:0043495: protein anchor	3.42E-03
59	GO:0005253: anion channel activity	3.42E-03
60	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	3.42E-03
61	GO:0046556: alpha-L-arabinofuranosidase activity	3.42E-03
62	GO:0004659: prenyltransferase activity	3.42E-03
63	GO:0030570: pectate lyase activity	4.36E-03
64	GO:0003989: acetyl-CoA carboxylase activity	4.38E-03
65	GO:0003959: NADPH dehydrogenase activity	4.38E-03
66	GO:0005247: voltage-gated chloride channel activity	5.43E-03
67	GO:0016208: AMP binding	5.43E-03
68	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	5.43E-03
69	GO:0016688: L-ascorbate peroxidase activity	5.43E-03
70	GO:0004017: adenylate kinase activity	6.56E-03
71	GO:0004559: alpha-mannosidase activity	6.56E-03
72	GO:0019899: enzyme binding	7.76E-03
73	GO:0004601: peroxidase activity	9.02E-03
74	GO:0004564: beta-fructofuranosidase activity	9.03E-03
75	GO:0004034: aldose 1-epimerase activity	9.03E-03
76	GO:0004033: aldo-keto reductase (NADP) activity	9.03E-03
77	GO:0016597: amino acid binding	1.02E-02
78	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	1.04E-02
79	GO:0016168: chlorophyll binding	1.14E-02
80	GO:0003747: translation release factor activity	1.18E-02
81	GO:0015112: nitrate transmembrane transporter activity	1.33E-02
82	GO:0004575: sucrose alpha-glucosidase activity	1.33E-02
83	GO:0005381: iron ion transmembrane transporter activity	1.33E-02
84	GO:0016844: strictosidine synthase activity	1.33E-02
85	GO:0008236: serine-type peptidase activity	1.34E-02
86	GO:0008378: galactosyltransferase activity	1.81E-02
87	GO:0000049: tRNA binding	1.81E-02
88	GO:0005509: calcium ion binding	1.95E-02
89	GO:0004565: beta-galactosidase activity	1.98E-02
90	GO:0004022: alcohol dehydrogenase (NAD) activity	1.98E-02
91	GO:0004089: carbonate dehydratase activity	1.98E-02
92	GO:0031072: heat shock protein binding	1.98E-02
93	GO:0003774: motor activity	2.16E-02
94	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	2.16E-02
95	GO:0051537: 2 iron, 2 sulfur cluster binding	2.50E-02
96	GO:0031409: pigment binding	2.53E-02
97	GO:0004519: endonuclease activity	2.54E-02
98	GO:0051287: NAD binding	2.80E-02
99	GO:0015079: potassium ion transmembrane transporter activity	2.92E-02
100	GO:0004707: MAP kinase activity	3.13E-02
101	GO:0004176: ATP-dependent peptidase activity	3.13E-02
102	GO:0022891: substrate-specific transmembrane transporter activity	3.55E-02
103	GO:0003756: protein disulfide isomerase activity	3.77E-02
104	GO:0003727: single-stranded RNA binding	3.77E-02
105	GO:0016491: oxidoreductase activity	3.78E-02
106	GO:0004812: aminoacyl-tRNA ligase activity	3.99E-02
107	GO:0008080: N-acetyltransferase activity	4.44E-02
108	GO:0016853: isomerase activity	4.68E-02
109	GO:0050662: coenzyme binding	4.68E-02
110	GO:0010181: FMN binding	4.68E-02
111	GO:0003729: mRNA binding	4.71E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0044391: ribosomal subunit	0.00E+00
3	GO:0009344: nitrite reductase complex [NAD(P)H]	0.00E+00
4	GO:0009507: chloroplast	1.88E-88
5	GO:0009570: chloroplast stroma	7.07E-52
6	GO:0009941: chloroplast envelope	3.07E-46
7	GO:0009535: chloroplast thylakoid membrane	2.85E-39
8	GO:0009534: chloroplast thylakoid	1.36E-37
9	GO:0009543: chloroplast thylakoid lumen	1.66E-28
10	GO:0009579: thylakoid	1.02E-22
11	GO:0005840: ribosome	2.47E-17
12	GO:0031977: thylakoid lumen	7.09E-16
13	GO:0010007: magnesium chelatase complex	1.21E-07
14	GO:0009654: photosystem II oxygen evolving complex	8.24E-07
15	GO:0031969: chloroplast membrane	4.68E-06
16	GO:0009706: chloroplast inner membrane	5.96E-06
17	GO:0019898: extrinsic component of membrane	6.20E-06
18	GO:0030095: chloroplast photosystem II	9.42E-06
19	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.29E-05
20	GO:0000311: plastid large ribosomal subunit	1.37E-04
21	GO:0000312: plastid small ribosomal subunit	1.98E-04
22	GO:0016020: membrane	4.76E-04
23	GO:0043674: columella	4.98E-04
24	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	4.98E-04
25	GO:0009547: plastid ribosome	4.98E-04
26	GO:0009533: chloroplast stromal thylakoid	5.11E-04
27	GO:0009505: plant-type cell wall	6.69E-04
28	GO:0042170: plastid membrane	1.07E-03
29	GO:0032040: small-subunit processome	1.68E-03
30	GO:0033281: TAT protein transport complex	1.75E-03
31	GO:0009536: plastid	1.77E-03
32	GO:0048046: apoplast	2.31E-03
33	GO:0009531: secondary cell wall	2.54E-03
34	GO:0005775: vacuolar lumen	2.54E-03
35	GO:0005960: glycine cleavage complex	2.54E-03
36	GO:0015934: large ribosomal subunit	2.72E-03
37	GO:0042651: thylakoid membrane	3.31E-03
38	GO:0015935: small ribosomal subunit	3.64E-03
39	GO:0034707: chloride channel complex	5.43E-03
40	GO:0009522: photosystem I	6.45E-03
41	GO:0009523: photosystem II	6.92E-03
42	GO:0042807: central vacuole	7.76E-03
43	GO:0010319: stromule	9.57E-03
44	GO:0005763: mitochondrial small ribosomal subunit	1.18E-02
45	GO:0010287: plastoglobule	1.21E-02
46	GO:0016459: myosin complex	1.48E-02
47	GO:0005618: cell wall	1.53E-02
48	GO:0009705: plant-type vacuole membrane	1.95E-02
49	GO:0030076: light-harvesting complex	2.34E-02
50	GO:0022627: cytosolic small ribosomal subunit	2.78E-02
51	GO:0031225: anchored component of membrane	3.78E-02
52	GO:0022625: cytosolic large ribosomal subunit	4.68E-02
53	GO:0022626: cytosolic ribosome	4.85E-02