co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G73750

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0007172: signal complex assembly	0.00E+00
2	GO:0009661: chromoplast organization	0.00E+00
3	GO:0016120: carotene biosynthetic process	2.41E-06
4	GO:1902025: nitrate import	3.37E-05
5	GO:0090548: response to nitrate starvation	3.37E-05
6	GO:0034757: negative regulation of iron ion transport	3.37E-05
7	GO:0080005: photosystem stoichiometry adjustment	8.48E-05
8	GO:0010271: regulation of chlorophyll catabolic process	8.48E-05
9	GO:0042939: tripeptide transport	8.48E-05
10	GO:0071497: cellular response to freezing	8.48E-05
11	GO:1904143: positive regulation of carotenoid biosynthetic process	8.48E-05
12	GO:0080117: secondary growth	1.47E-04
13	GO:0050482: arachidonic acid secretion	2.18E-04
14	GO:0051639: actin filament network formation	2.18E-04
15	GO:0042938: dipeptide transport	2.95E-04
16	GO:1901141: regulation of lignin biosynthetic process	2.95E-04
17	GO:0051781: positive regulation of cell division	2.95E-04
18	GO:0051764: actin crosslink formation	2.95E-04
19	GO:0010600: regulation of auxin biosynthetic process	2.95E-04
20	GO:0048831: regulation of shoot system development	4.63E-04
21	GO:0048509: regulation of meristem development	5.53E-04
22	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	5.53E-04
23	GO:0010161: red light signaling pathway	6.47E-04
24	GO:0010439: regulation of glucosinolate biosynthetic process	7.44E-04
25	GO:0009704: de-etiolation	7.44E-04
26	GO:0050821: protein stabilization	7.44E-04
27	GO:0006644: phospholipid metabolic process	7.44E-04
28	GO:0034968: histone lysine methylation	7.44E-04
29	GO:0010928: regulation of auxin mediated signaling pathway	7.44E-04
30	GO:0009827: plant-type cell wall modification	8.45E-04
31	GO:0034765: regulation of ion transmembrane transport	9.49E-04
32	GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	1.06E-03
33	GO:0018105: peptidyl-serine phosphorylation	1.13E-03
34	GO:0018119: peptidyl-cysteine S-nitrosylation	1.28E-03
35	GO:0071365: cellular response to auxin stimulus	1.40E-03
36	GO:0005983: starch catabolic process	1.40E-03
37	GO:0006807: nitrogen compound metabolic process	1.52E-03
38	GO:0018107: peptidyl-threonine phosphorylation	1.52E-03
39	GO:0009934: regulation of meristem structural organization	1.65E-03
40	GO:0080188: RNA-directed DNA methylation	1.78E-03
41	GO:0006833: water transport	1.91E-03
42	GO:0051017: actin filament bundle assembly	2.05E-03
43	GO:0006289: nucleotide-excision repair	2.05E-03
44	GO:0007166: cell surface receptor signaling pathway	2.12E-03
45	GO:0010017: red or far-red light signaling pathway	2.48E-03
46	GO:0009294: DNA mediated transformation	2.63E-03
47	GO:0009625: response to insect	2.63E-03
48	GO:0071215: cellular response to abscisic acid stimulus	2.63E-03
49	GO:0070417: cellular response to cold	2.94E-03
50	GO:0016117: carotenoid biosynthetic process	2.94E-03
51	GO:0042391: regulation of membrane potential	3.09E-03
52	GO:0034220: ion transmembrane transport	3.09E-03
53	GO:0010051: xylem and phloem pattern formation	3.09E-03
54	GO:0010087: phloem or xylem histogenesis	3.09E-03
55	GO:0009414: response to water deprivation	3.12E-03
56	GO:0045489: pectin biosynthetic process	3.25E-03
57	GO:0019252: starch biosynthetic process	3.59E-03
58	GO:0046777: protein autophosphorylation	3.77E-03
59	GO:0071805: potassium ion transmembrane transport	4.46E-03
60	GO:0010029: regulation of seed germination	5.02E-03
61	GO:0030244: cellulose biosynthetic process	5.79E-03
62	GO:0010311: lateral root formation	5.99E-03
63	GO:0000160: phosphorelay signal transduction system	5.99E-03
64	GO:0009834: plant-type secondary cell wall biogenesis	6.20E-03
65	GO:0009631: cold acclimation	6.40E-03
66	GO:0009636: response to toxic substance	8.82E-03
67	GO:0035556: intracellular signal transduction	9.70E-03
68	GO:0009736: cytokinin-activated signaling pathway	1.00E-02
69	GO:0009585: red, far-red light phototransduction	1.00E-02
70	GO:0006857: oligopeptide transport	1.05E-02
71	GO:0009909: regulation of flower development	1.08E-02
72	GO:0055085: transmembrane transport	1.17E-02
73	GO:0006468: protein phosphorylation	1.17E-02
74	GO:0009651: response to salt stress	1.49E-02
75	GO:0006413: translational initiation	1.80E-02
76	GO:0007623: circadian rhythm	1.89E-02
77	GO:0030154: cell differentiation	2.03E-02
78	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.05E-02
79	GO:0010468: regulation of gene expression	2.15E-02
80	GO:0006970: response to osmotic stress	2.72E-02
81	GO:0005975: carbohydrate metabolic process	2.84E-02
82	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.08E-02
83	GO:0009737: response to abscisic acid	3.97E-02
84	GO:0009753: response to jasmonic acid	4.18E-02
85	GO:0006357: regulation of transcription from RNA polymerase II promoter	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0051060: pullulanase activity	0.00E+00
2	GO:0010303: limit dextrinase activity	0.00E+00
3	GO:0016166: phytoene dehydrogenase activity	0.00E+00
4	GO:0017046: peptide hormone binding	0.00E+00
5	GO:0004163: diphosphomevalonate decarboxylase activity	3.37E-05
6	GO:0009884: cytokinin receptor activity	8.48E-05
7	GO:0019172: glyoxalase III activity	8.48E-05
8	GO:0042937: tripeptide transporter activity	8.48E-05
9	GO:0005034: osmosensor activity	1.47E-04
10	GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity	1.47E-04
11	GO:0070628: proteasome binding	2.95E-04
12	GO:0042277: peptide binding	2.95E-04
13	GO:0042936: dipeptide transporter activity	2.95E-04
14	GO:0004623: phospholipase A2 activity	3.77E-04
15	GO:0031593: polyubiquitin binding	4.63E-04
16	GO:0004556: alpha-amylase activity	4.63E-04
17	GO:0004462: lactoylglutathione lyase activity	4.63E-04
18	GO:0042393: histone binding	5.25E-04
19	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	5.53E-04
20	GO:0019900: kinase binding	5.53E-04
21	GO:0005242: inward rectifier potassium channel activity	5.53E-04
22	GO:0004673: protein histidine kinase activity	1.17E-03
23	GO:0005515: protein binding	1.38E-03
24	GO:0000155: phosphorelay sensor kinase activity	1.52E-03
25	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.74E-03
26	GO:0043130: ubiquitin binding	2.05E-03
27	GO:0043424: protein histidine kinase binding	2.19E-03
28	GO:0033612: receptor serine/threonine kinase binding	2.33E-03
29	GO:0042802: identical protein binding	2.35E-03
30	GO:0018024: histone-lysine N-methyltransferase activity	2.94E-03
31	GO:0005249: voltage-gated potassium channel activity	3.09E-03
32	GO:0030551: cyclic nucleotide binding	3.09E-03
33	GO:0019901: protein kinase binding	3.59E-03
34	GO:0004518: nuclease activity	3.93E-03
35	GO:0051015: actin filament binding	4.10E-03
36	GO:0003684: damaged DNA binding	4.28E-03
37	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	4.46E-03
38	GO:0008483: transaminase activity	4.46E-03
39	GO:0016413: O-acetyltransferase activity	4.64E-03
40	GO:0015250: water channel activity	4.83E-03
41	GO:0009931: calcium-dependent protein serine/threonine kinase activity	5.21E-03
42	GO:0004683: calmodulin-dependent protein kinase activity	5.40E-03
43	GO:0003746: translation elongation factor activity	6.82E-03
44	GO:0043621: protein self-association	8.60E-03
45	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	9.06E-03
46	GO:0016301: kinase activity	1.17E-02
47	GO:0005524: ATP binding	1.22E-02
48	GO:0003779: actin binding	1.26E-02
49	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.54E-02
50	GO:0003677: DNA binding	1.75E-02
51	GO:0005215: transporter activity	2.07E-02
52	GO:0003743: translation initiation factor activity	2.11E-02
53	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.24E-02
54	GO:0004674: protein serine/threonine kinase activity	2.42E-02
55	GO:0004842: ubiquitin-protein transferase activity	2.58E-02
56	GO:0004672: protein kinase activity	2.75E-02
57	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	3.42E-02
58	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	3.70E-02

Rank	GO Term	Adjusted P value
1	GO:0009509: chromoplast	1.47E-04
2	GO:0032432: actin filament bundle	2.18E-04
3	GO:0005884: actin filament	1.28E-03
4	GO:0000775: chromosome, centromeric region	2.48E-03
5	GO:0031969: chloroplast membrane	3.53E-03
6	GO:0005886: plasma membrane	3.76E-03
7	GO:0019005: SCF ubiquitin ligase complex	5.79E-03
8	GO:0000325: plant-type vacuole	6.40E-03
9	GO:0005887: integral component of plasma membrane	7.03E-03
10	GO:0031977: thylakoid lumen	7.69E-03
11	GO:0009507: chloroplast	1.59E-02
12	GO:0005759: mitochondrial matrix	1.77E-02
13	GO:0009941: chloroplast envelope	2.29E-02
14	GO:0009506: plasmodesma	2.61E-02
15	GO:0005773: vacuole	2.66E-02
16	GO:0005789: endoplasmic reticulum membrane	2.86E-02
17	GO:0009570: chloroplast stroma	3.46E-02