co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G71860

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006987: activation of signaling protein activity involved in unfolded protein response	0.00E+00
2	GO:0036258: multivesicular body assembly	0.00E+00
3	GO:1904215: regulation of protein import into chloroplast stroma	0.00E+00
4	GO:0016236: macroautophagy	0.00E+00
5	GO:0009991: response to extracellular stimulus	0.00E+00
6	GO:0000169: activation of MAPK activity involved in osmosensory signaling pathway	0.00E+00
7	GO:0006468: protein phosphorylation	3.25E-06
8	GO:0046777: protein autophosphorylation	1.77E-05
9	GO:0006623: protein targeting to vacuole	9.24E-05
10	GO:0030968: endoplasmic reticulum unfolded protein response	1.36E-04
11	GO:0080136: priming of cellular response to stress	1.52E-04
12	GO:0034214: protein hexamerization	1.52E-04
13	GO:0046467: membrane lipid biosynthetic process	1.52E-04
14	GO:0010265: SCF complex assembly	1.52E-04
15	GO:0051410: detoxification of nitrogen compound	1.52E-04
16	GO:0071806: protein transmembrane transport	1.52E-04
17	GO:0010201: response to continuous far red light stimulus by the high-irradiance response system	1.52E-04
18	GO:0030242: pexophagy	1.52E-04
19	GO:0019499: cyanide metabolic process	1.52E-04
20	GO:0000303: response to superoxide	1.52E-04
21	GO:0006481: C-terminal protein methylation	1.52E-04
22	GO:0009867: jasmonic acid mediated signaling pathway	3.46E-04
23	GO:0051258: protein polymerization	3.47E-04
24	GO:1902000: homogentisate catabolic process	3.47E-04
25	GO:0006996: organelle organization	3.47E-04
26	GO:0046740: transport of virus in host, cell to cell	3.47E-04
27	GO:0010359: regulation of anion channel activity	5.68E-04
28	GO:0071492: cellular response to UV-A	5.68E-04
29	GO:0009072: aromatic amino acid family metabolic process	5.68E-04
30	GO:0048281: inflorescence morphogenesis	5.68E-04
31	GO:0051603: proteolysis involved in cellular protein catabolic process	7.31E-04
32	GO:0009723: response to ethylene	8.10E-04
33	GO:0006809: nitric oxide biosynthetic process	8.13E-04
34	GO:0009399: nitrogen fixation	8.13E-04
35	GO:0070676: intralumenal vesicle formation	8.13E-04
36	GO:0006624: vacuolar protein processing	8.13E-04
37	GO:0010071: root meristem specification	8.13E-04
38	GO:0070301: cellular response to hydrogen peroxide	8.13E-04
39	GO:0048367: shoot system development	8.97E-04
40	GO:2000038: regulation of stomatal complex development	1.08E-03
41	GO:0045324: late endosome to vacuole transport	1.08E-03
42	GO:0042991: transcription factor import into nucleus	1.08E-03
43	GO:0006878: cellular copper ion homeostasis	1.08E-03
44	GO:0006542: glutamine biosynthetic process	1.08E-03
45	GO:0071486: cellular response to high light intensity	1.08E-03
46	GO:0009765: photosynthesis, light harvesting	1.08E-03
47	GO:0006914: autophagy	1.61E-03
48	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	1.67E-03
49	GO:1902456: regulation of stomatal opening	1.67E-03
50	GO:1900425: negative regulation of defense response to bacterium	1.67E-03
51	GO:0009117: nucleotide metabolic process	1.67E-03
52	GO:0070814: hydrogen sulfide biosynthetic process	1.67E-03
53	GO:0048317: seed morphogenesis	1.67E-03
54	GO:0009790: embryo development	1.74E-03
55	GO:0080060: integument development	2.01E-03
56	GO:2000037: regulation of stomatal complex patterning	2.01E-03
57	GO:0000911: cytokinesis by cell plate formation	2.01E-03
58	GO:0009816: defense response to bacterium, incompatible interaction	2.03E-03
59	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.03E-03
60	GO:0006950: response to stress	2.26E-03
61	GO:0015937: coenzyme A biosynthetic process	2.36E-03
62	GO:0010038: response to metal ion	2.36E-03
63	GO:0010044: response to aluminum ion	2.36E-03
64	GO:0009610: response to symbiotic fungus	2.36E-03
65	GO:0045995: regulation of embryonic development	2.36E-03
66	GO:0006955: immune response	2.36E-03
67	GO:0010468: regulation of gene expression	2.69E-03
68	GO:0010078: maintenance of root meristem identity	2.73E-03
69	GO:0010492: maintenance of shoot apical meristem identity	2.73E-03
70	GO:0006102: isocitrate metabolic process	2.73E-03
71	GO:0010120: camalexin biosynthetic process	3.12E-03
72	GO:0090333: regulation of stomatal closure	3.53E-03
73	GO:2000280: regulation of root development	3.96E-03
74	GO:0008202: steroid metabolic process	3.96E-03
75	GO:0019538: protein metabolic process	4.40E-03
76	GO:0000103: sulfate assimilation	4.40E-03
77	GO:0015031: protein transport	4.47E-03
78	GO:0048366: leaf development	4.60E-03
79	GO:0010072: primary shoot apical meristem specification	4.86E-03
80	GO:0072593: reactive oxygen species metabolic process	4.86E-03
81	GO:0048229: gametophyte development	4.86E-03
82	GO:0030148: sphingolipid biosynthetic process	4.86E-03
83	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	4.90E-03
84	GO:0010200: response to chitin	5.13E-03
85	GO:0045037: protein import into chloroplast stroma	5.34E-03
86	GO:0012501: programmed cell death	5.34E-03
87	GO:0006813: potassium ion transport	5.45E-03
88	GO:0010102: lateral root morphogenesis	5.83E-03
89	GO:0006626: protein targeting to mitochondrion	5.83E-03
90	GO:0010229: inflorescence development	5.83E-03
91	GO:0055046: microgametogenesis	5.83E-03
92	GO:0009887: animal organ morphogenesis	6.33E-03
93	GO:0006886: intracellular protein transport	6.42E-03
94	GO:0070588: calcium ion transmembrane transport	6.86E-03
95	GO:0046854: phosphatidylinositol phosphorylation	6.86E-03
96	GO:0010053: root epidermal cell differentiation	6.86E-03
97	GO:0009825: multidimensional cell growth	6.86E-03
98	GO:0009626: plant-type hypersensitive response	6.87E-03
99	GO:0034976: response to endoplasmic reticulum stress	7.40E-03
100	GO:0030150: protein import into mitochondrial matrix	7.95E-03
101	GO:2000377: regulation of reactive oxygen species metabolic process	7.95E-03
102	GO:0016575: histone deacetylation	8.51E-03
103	GO:0009753: response to jasmonic acid	8.81E-03
104	GO:0030433: ubiquitin-dependent ERAD pathway	9.69E-03
105	GO:0071215: cellular response to abscisic acid stimulus	1.03E-02
106	GO:0009845: seed germination	1.05E-02
107	GO:0009561: megagametogenesis	1.09E-02
108	GO:0010091: trichome branching	1.09E-02
109	GO:0042742: defense response to bacterium	1.12E-02
110	GO:0009873: ethylene-activated signaling pathway	1.12E-02
111	GO:0006979: response to oxidative stress	1.13E-02
112	GO:0042147: retrograde transport, endosome to Golgi	1.16E-02
113	GO:0080022: primary root development	1.22E-02
114	GO:0010087: phloem or xylem histogenesis	1.22E-02
115	GO:0042631: cellular response to water deprivation	1.22E-02
116	GO:0010154: fruit development	1.29E-02
117	GO:0010197: polar nucleus fusion	1.29E-02
118	GO:0010150: leaf senescence	1.34E-02
119	GO:0006814: sodium ion transport	1.36E-02
120	GO:0042752: regulation of circadian rhythm	1.36E-02
121	GO:0010183: pollen tube guidance	1.42E-02
122	GO:0048825: cotyledon development	1.42E-02
123	GO:0055072: iron ion homeostasis	1.42E-02
124	GO:0002229: defense response to oomycetes	1.50E-02
125	GO:0010193: response to ozone	1.50E-02
126	GO:0006891: intra-Golgi vesicle-mediated transport	1.50E-02
127	GO:0006470: protein dephosphorylation	1.54E-02
128	GO:0007166: cell surface receptor signaling pathway	1.54E-02
129	GO:0016032: viral process	1.57E-02
130	GO:0009738: abscisic acid-activated signaling pathway	1.60E-02
131	GO:0006464: cellular protein modification process	1.71E-02
132	GO:0009611: response to wounding	1.72E-02
133	GO:0009409: response to cold	1.77E-02
134	GO:0071805: potassium ion transmembrane transport	1.79E-02
135	GO:0006904: vesicle docking involved in exocytosis	1.79E-02
136	GO:0035556: intracellular signal transduction	1.79E-02
137	GO:0051607: defense response to virus	1.86E-02
138	GO:0050832: defense response to fungus	1.94E-02
139	GO:0042128: nitrate assimilation	2.10E-02
140	GO:0048573: photoperiodism, flowering	2.18E-02
141	GO:0006970: response to osmotic stress	2.25E-02
142	GO:0009817: defense response to fungus, incompatible interaction	2.34E-02
143	GO:0048481: plant ovule development	2.34E-02
144	GO:0009407: toxin catabolic process	2.51E-02
145	GO:0048527: lateral root development	2.60E-02
146	GO:0010119: regulation of stomatal movement	2.60E-02
147	GO:0007568: aging	2.60E-02
148	GO:0009910: negative regulation of flower development	2.60E-02
149	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.68E-02
150	GO:0034599: cellular response to oxidative stress	2.86E-02
151	GO:0006099: tricarboxylic acid cycle	2.86E-02
152	GO:0006887: exocytosis	3.14E-02
153	GO:0006631: fatty acid metabolic process	3.14E-02
154	GO:0007165: signal transduction	3.34E-02
155	GO:0000209: protein polyubiquitination	3.42E-02
156	GO:0009751: response to salicylic acid	3.76E-02
157	GO:0031347: regulation of defense response	3.81E-02
158	GO:0006812: cation transport	3.91E-02
159	GO:0009846: pollen germination	3.91E-02
160	GO:0042538: hyperosmotic salinity response	3.91E-02
161	GO:0048364: root development	3.98E-02
162	GO:0009736: cytokinin-activated signaling pathway	4.11E-02
163	GO:0010224: response to UV-B	4.21E-02
164	GO:0016310: phosphorylation	4.23E-02

Rank	GO Term	Adjusted P value
1	GO:0047427: cyanoalanine nitrilase activity	0.00E+00
2	GO:0047558: 3-cyanoalanine hydratase activity	0.00E+00
3	GO:0018822: nitrile hydratase activity	0.00E+00
4	GO:0016034: maleylacetoacetate isomerase activity	0.00E+00
5	GO:0005524: ATP binding	1.43E-08
6	GO:0004674: protein serine/threonine kinase activity	1.68E-06
7	GO:0016301: kinase activity	1.07E-05
8	GO:0004671: protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity	1.52E-04
9	GO:0004713: protein tyrosine kinase activity	2.36E-04
10	GO:0001077: transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	3.47E-04
11	GO:0045140: inositol phosphoceramide synthase activity	3.47E-04
12	GO:0004450: isocitrate dehydrogenase (NADP+) activity	3.47E-04
13	GO:0004385: guanylate kinase activity	3.47E-04
14	GO:0004594: pantothenate kinase activity	3.47E-04
15	GO:0005515: protein binding	4.86E-04
16	GO:0043130: ubiquitin binding	5.64E-04
17	GO:0080061: indole-3-acetonitrile nitrilase activity	5.68E-04
18	GO:0004781: sulfate adenylyltransferase (ATP) activity	5.68E-04
19	GO:0000285: 1-phosphatidylinositol-3-phosphate 5-kinase activity	8.13E-04
20	GO:0004416: hydroxyacylglutathione hydrolase activity	8.13E-04
21	GO:0000257: nitrilase activity	8.13E-04
22	GO:0004356: glutamate-ammonia ligase activity	1.36E-03
23	GO:0004197: cysteine-type endopeptidase activity	1.43E-03
24	GO:0004672: protein kinase activity	1.59E-03
25	GO:0031593: polyubiquitin binding	1.67E-03
26	GO:0047714: galactolipase activity	1.67E-03
27	GO:0005516: calmodulin binding	1.74E-03
28	GO:0102391: decanoate--CoA ligase activity	2.01E-03
29	GO:0003950: NAD+ ADP-ribosyltransferase activity	2.01E-03
30	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	2.01E-03
31	GO:0004467: long-chain fatty acid-CoA ligase activity	2.36E-03
32	GO:0004869: cysteine-type endopeptidase inhibitor activity	2.73E-03
33	GO:0015491: cation:cation antiporter activity	2.73E-03
34	GO:0008970: phosphatidylcholine 1-acylhydrolase activity	3.12E-03
35	GO:0008142: oxysterol binding	3.12E-03
36	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	3.12E-03
37	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.44E-03
38	GO:0046982: protein heterodimerization activity	3.65E-03
39	GO:0045309: protein phosphorylated amino acid binding	3.96E-03
40	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	4.40E-03
41	GO:0019904: protein domain specific binding	4.86E-03
42	GO:0004521: endoribonuclease activity	5.34E-03
43	GO:0015266: protein channel activity	5.83E-03
44	GO:0005388: calcium-transporting ATPase activity	5.83E-03
45	GO:0004175: endopeptidase activity	6.33E-03
46	GO:0042803: protein homodimerization activity	6.55E-03
47	GO:0004871: signal transducer activity	6.55E-03
48	GO:0004407: histone deacetylase activity	7.95E-03
49	GO:0015079: potassium ion transmembrane transporter activity	8.51E-03
50	GO:0043424: protein histidine kinase binding	8.51E-03
51	GO:0004707: MAP kinase activity	9.10E-03
52	GO:0005509: calcium ion binding	9.92E-03
53	GO:0016168: chlorophyll binding	2.02E-02
54	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.10E-02
55	GO:0004806: triglyceride lipase activity	2.18E-02
56	GO:0030247: polysaccharide binding	2.18E-02
57	GO:0004683: calmodulin-dependent protein kinase activity	2.18E-02
58	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.34E-02
59	GO:0030246: carbohydrate binding	2.43E-02
60	GO:0061630: ubiquitin protein ligase activity	2.72E-02
61	GO:0004364: glutathione transferase activity	3.23E-02
62	GO:0004722: protein serine/threonine phosphatase activity	3.39E-02
63	GO:0035091: phosphatidylinositol binding	3.52E-02
64	GO:0051287: NAD binding	3.81E-02
65	GO:0031625: ubiquitin protein ligase binding	4.42E-02
66	GO:0008234: cysteine-type peptidase activity	4.42E-02
67	GO:0045330: aspartyl esterase activity	4.42E-02

Rank	GO Term	Adjusted P value
1	GO:0045335: phagocytic vesicle	0.00E+00
2	GO:0071561: nucleus-vacuole junction	0.00E+00
3	GO:0005886: plasma membrane	1.89E-05
4	GO:0034272: phosphatidylinositol 3-kinase complex, class III, type II	1.52E-04
5	GO:0034271: phosphatidylinositol 3-kinase complex, class III, type I	1.52E-04
6	GO:0031972: chloroplast intermembrane space	1.52E-04
7	GO:0017119: Golgi transport complex	2.36E-04
8	GO:0042406: extrinsic component of endoplasmic reticulum membrane	5.68E-04
9	GO:0000323: lytic vacuole	8.13E-04
10	GO:0070062: extracellular exosome	8.13E-04
11	GO:0031461: cullin-RING ubiquitin ligase complex	8.13E-04
12	GO:0000813: ESCRT I complex	1.36E-03
13	GO:0016363: nuclear matrix	2.01E-03
14	GO:0000794: condensed nuclear chromosome	2.36E-03
15	GO:0031305: integral component of mitochondrial inner membrane	2.73E-03
16	GO:0031902: late endosome membrane	3.74E-03
17	GO:0030665: clathrin-coated vesicle membrane	3.96E-03
18	GO:0016021: integral component of membrane	5.63E-03
19	GO:0005764: lysosome	6.33E-03
20	GO:0005795: Golgi stack	6.86E-03
21	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.09E-02
22	GO:0030136: clathrin-coated vesicle	1.16E-02
23	GO:0005829: cytosol	1.17E-02
24	GO:0005887: integral component of plasma membrane	1.19E-02
25	GO:0005783: endoplasmic reticulum	1.26E-02
26	GO:0005770: late endosome	1.29E-02
27	GO:0009523: photosystem II	1.42E-02
28	GO:0000145: exocyst	1.57E-02
29	GO:0071944: cell periphery	1.64E-02
30	GO:0005789: endoplasmic reticulum membrane	2.12E-02
31	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	2.29E-02
32	GO:0000151: ubiquitin ligase complex	2.34E-02
33	GO:0005643: nuclear pore	2.34E-02
34	GO:0009707: chloroplast outer membrane	2.34E-02
35	GO:0000786: nucleosome	2.69E-02
36	GO:0005819: spindle	2.95E-02
37	GO:0005802: trans-Golgi network	3.02E-02
38	GO:0043231: intracellular membrane-bounded organelle	4.20E-02
39	GO:0005635: nuclear envelope	4.31E-02
40	GO:0010008: endosome membrane	4.73E-02
41	GO:0005834: heterotrimeric G-protein complex	4.84E-02