co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G71840

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000478: endonucleolytic cleavage involved in rRNA processing	0.00E+00
2	GO:0019307: mannose biosynthetic process	0.00E+00
3	GO:0072321: chaperone-mediated protein transport	0.00E+00
4	GO:0071433: cell wall repair	0.00E+00
5	GO:0072722: response to amitrole	0.00E+00
6	GO:0006042: glucosamine biosynthetic process	0.00E+00
7	GO:1901137: carbohydrate derivative biosynthetic process	0.00E+00
8	GO:0080056: petal vascular tissue pattern formation	0.00E+00
9	GO:0045047: protein targeting to ER	0.00E+00
10	GO:0039694: viral RNA genome replication	0.00E+00
11	GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	0.00E+00
12	GO:0080057: sepal vascular tissue pattern formation	0.00E+00
13	GO:0070476: rRNA (guanine-N7)-methylation	0.00E+00
14	GO:0034976: response to endoplasmic reticulum stress	2.33E-12
15	GO:0006457: protein folding	3.17E-11
16	GO:0046686: response to cadmium ion	9.63E-09
17	GO:0045454: cell redox homeostasis	8.49E-08
18	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	2.51E-06
19	GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	2.51E-06
20	GO:0006099: tricarboxylic acid cycle	4.64E-06
21	GO:0009651: response to salt stress	5.78E-06
22	GO:0045039: protein import into mitochondrial inner membrane	9.11E-06
23	GO:0000460: maturation of 5.8S rRNA	3.78E-05
24	GO:0018279: protein N-linked glycosylation via asparagine	6.05E-05
25	GO:0009697: salicylic acid biosynthetic process	6.05E-05
26	GO:0000470: maturation of LSU-rRNA	8.88E-05
27	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	1.23E-04
28	GO:0009306: protein secretion	1.26E-04
29	GO:0006605: protein targeting	2.06E-04
30	GO:0006102: isocitrate metabolic process	2.06E-04
31	GO:1990258: histone glutamine methylation	2.32E-04
32	GO:0043266: regulation of potassium ion transport	2.32E-04
33	GO:0019673: GDP-mannose metabolic process	2.32E-04
34	GO:0050691: regulation of defense response to virus by host	2.32E-04
35	GO:0051775: response to redox state	2.32E-04
36	GO:0042964: thioredoxin reduction	2.32E-04
37	GO:0019276: UDP-N-acetylgalactosamine metabolic process	2.32E-04
38	GO:0034975: protein folding in endoplasmic reticulum	2.32E-04
39	GO:0000494: box C/D snoRNA 3'-end processing	2.32E-04
40	GO:0006047: UDP-N-acetylglucosamine metabolic process	2.32E-04
41	GO:0043687: post-translational protein modification	2.32E-04
42	GO:0030968: endoplasmic reticulum unfolded protein response	2.55E-04
43	GO:0009553: embryo sac development	3.40E-04
44	GO:0030003: cellular cation homeostasis	5.15E-04
45	GO:0042742: defense response to bacterium	6.98E-04
46	GO:0055074: calcium ion homeostasis	8.37E-04
47	GO:0042351: 'de novo' GDP-L-fucose biosynthetic process	8.37E-04
48	GO:0042256: mature ribosome assembly	8.37E-04
49	GO:0006011: UDP-glucose metabolic process	8.37E-04
50	GO:0010272: response to silver ion	8.37E-04
51	GO:0006421: asparaginyl-tRNA aminoacylation	8.37E-04
52	GO:0006048: UDP-N-acetylglucosamine biosynthetic process	8.37E-04
53	GO:1902626: assembly of large subunit precursor of preribosome	8.37E-04
54	GO:0006013: mannose metabolic process	8.37E-04
55	GO:0000162: tryptophan biosynthetic process	9.01E-04
56	GO:0009617: response to bacterium	1.08E-03
57	GO:0051131: chaperone-mediated protein complex assembly	1.19E-03
58	GO:0010116: positive regulation of abscisic acid biosynthetic process	1.19E-03
59	GO:0009298: GDP-mannose biosynthetic process	1.19E-03
60	GO:0072334: UDP-galactose transmembrane transport	1.19E-03
61	GO:0007276: gamete generation	1.19E-03
62	GO:0061077: chaperone-mediated protein folding	1.20E-03
63	GO:0031348: negative regulation of defense response	1.31E-03
64	GO:0006364: rRNA processing	1.47E-03
65	GO:0051205: protein insertion into membrane	1.59E-03
66	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	1.59E-03
67	GO:0051365: cellular response to potassium ion starvation	1.59E-03
68	GO:0042254: ribosome biogenesis	1.64E-03
69	GO:0008033: tRNA processing	1.81E-03
70	GO:0048316: seed development	1.89E-03
71	GO:0006564: L-serine biosynthetic process	2.03E-03
72	GO:0006461: protein complex assembly	2.03E-03
73	GO:0045116: protein neddylation	2.03E-03
74	GO:0000304: response to singlet oxygen	2.03E-03
75	GO:0031167: rRNA methylation	2.03E-03
76	GO:0009735: response to cytokinin	2.09E-03
77	GO:0009555: pollen development	2.45E-03
78	GO:0006979: response to oxidative stress	2.50E-03
79	GO:0047484: regulation of response to osmotic stress	2.50E-03
80	GO:0006458: 'de novo' protein folding	3.00E-03
81	GO:0000054: ribosomal subunit export from nucleus	3.00E-03
82	GO:0009423: chorismate biosynthetic process	3.00E-03
83	GO:0010555: response to mannitol	3.00E-03
84	GO:0009648: photoperiodism	3.00E-03
85	GO:0042372: phylloquinone biosynthetic process	3.00E-03
86	GO:1902074: response to salt	3.54E-03
87	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	3.54E-03
88	GO:0009627: systemic acquired resistance	3.86E-03
89	GO:0006875: cellular metal ion homeostasis	4.10E-03
90	GO:0050821: protein stabilization	4.10E-03
91	GO:0055075: potassium ion homeostasis	4.10E-03
92	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	4.10E-03
93	GO:0030091: protein repair	4.10E-03
94	GO:0019430: removal of superoxide radicals	4.70E-03
95	GO:0001510: RNA methylation	4.70E-03
96	GO:0006367: transcription initiation from RNA polymerase II promoter	4.70E-03
97	GO:0006499: N-terminal protein myristoylation	4.97E-03
98	GO:0010043: response to zinc ion	5.21E-03
99	GO:0015780: nucleotide-sugar transport	5.32E-03
100	GO:0098656: anion transmembrane transport	5.32E-03
101	GO:0046685: response to arsenic-containing substance	5.32E-03
102	GO:0010205: photoinhibition	5.97E-03
103	GO:0043067: regulation of programmed cell death	5.97E-03
104	GO:0090332: stomatal closure	5.97E-03
105	GO:0006032: chitin catabolic process	6.65E-03
106	GO:0000272: polysaccharide catabolic process	7.35E-03
107	GO:0006816: calcium ion transport	7.35E-03
108	GO:0052544: defense response by callose deposition in cell wall	7.35E-03
109	GO:0009073: aromatic amino acid family biosynthetic process	7.35E-03
110	GO:0006790: sulfur compound metabolic process	8.08E-03
111	GO:0006820: anion transport	8.08E-03
112	GO:0006626: protein targeting to mitochondrion	8.84E-03
113	GO:0018107: peptidyl-threonine phosphorylation	8.84E-03
114	GO:0010075: regulation of meristem growth	8.84E-03
115	GO:0006094: gluconeogenesis	8.84E-03
116	GO:0010588: cotyledon vascular tissue pattern formation	8.84E-03
117	GO:0009846: pollen germination	9.24E-03
118	GO:0009934: regulation of meristem structural organization	9.62E-03
119	GO:0006541: glutamine metabolic process	9.62E-03
120	GO:0002237: response to molecule of bacterial origin	9.62E-03
121	GO:0048366: leaf development	9.86E-03
122	GO:0046854: phosphatidylinositol phosphorylation	1.04E-02
123	GO:0046688: response to copper ion	1.04E-02
124	GO:0019853: L-ascorbic acid biosynthetic process	1.04E-02
125	GO:0010187: negative regulation of seed germination	1.21E-02
126	GO:0006487: protein N-linked glycosylation	1.21E-02
127	GO:0080147: root hair cell development	1.21E-02
128	GO:0009793: embryo development ending in seed dormancy	1.27E-02
129	GO:0015031: protein transport	1.28E-02
130	GO:0006825: copper ion transport	1.30E-02
131	GO:0051302: regulation of cell division	1.30E-02
132	GO:0006874: cellular calcium ion homeostasis	1.30E-02
133	GO:0016998: cell wall macromolecule catabolic process	1.39E-02
134	GO:0030433: ubiquitin-dependent ERAD pathway	1.48E-02
135	GO:0007131: reciprocal meiotic recombination	1.48E-02
136	GO:0010227: floral organ abscission	1.57E-02
137	GO:0071215: cellular response to abscisic acid stimulus	1.57E-02
138	GO:0009561: megagametogenesis	1.67E-02
139	GO:0009408: response to heat	1.73E-02
140	GO:0048364: root development	1.82E-02
141	GO:0010501: RNA secondary structure unwinding	1.87E-02
142	GO:0000413: protein peptidyl-prolyl isomerization	1.87E-02
143	GO:0010118: stomatal movement	1.87E-02
144	GO:0010305: leaf vascular tissue pattern formation	1.97E-02
145	GO:0010197: polar nucleus fusion	1.97E-02
146	GO:0048868: pollen tube development	1.97E-02
147	GO:0010154: fruit development	1.97E-02
148	GO:0009851: auxin biosynthetic process	2.18E-02
149	GO:0000302: response to reactive oxygen species	2.29E-02
150	GO:0006635: fatty acid beta-oxidation	2.29E-02
151	GO:0006413: translational initiation	2.29E-02
152	GO:0009630: gravitropism	2.40E-02
153	GO:0007264: small GTPase mediated signal transduction	2.40E-02
154	GO:0010150: leaf senescence	2.46E-02
155	GO:0030163: protein catabolic process	2.51E-02
156	GO:0006464: cellular protein modification process	2.62E-02
157	GO:0009567: double fertilization forming a zygote and endosperm	2.62E-02
158	GO:0010252: auxin homeostasis	2.62E-02
159	GO:0009414: response to water deprivation	2.66E-02
160	GO:0010286: heat acclimation	2.74E-02
161	GO:0009615: response to virus	2.98E-02
162	GO:0016126: sterol biosynthetic process	2.98E-02
163	GO:0009816: defense response to bacterium, incompatible interaction	3.10E-02
164	GO:0006906: vesicle fusion	3.22E-02
165	GO:0016311: dephosphorylation	3.47E-02
166	GO:0016049: cell growth	3.47E-02
167	GO:0009817: defense response to fungus, incompatible interaction	3.59E-02
168	GO:0009826: unidimensional cell growth	3.65E-02
169	GO:0045087: innate immune response	4.25E-02
170	GO:0009409: response to cold	4.27E-02
171	GO:0006887: exocytosis	4.81E-02
172	GO:0042542: response to hydrogen peroxide	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0016312: inositol bisphosphate phosphatase activity	0.00E+00
2	GO:0015165: pyrimidine nucleotide-sugar transmembrane transporter activity	0.00E+00
3	GO:0004360: glutamine-fructose-6-phosphate transaminase (isomerizing) activity	0.00E+00
4	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	0.00E+00
5	GO:0004615: phosphomannomutase activity	0.00E+00
6	GO:0004631: phosphomevalonate kinase activity	0.00E+00
7	GO:0050220: prostaglandin-E synthase activity	0.00E+00
8	GO:0016435: rRNA (guanine) methyltransferase activity	0.00E+00
9	GO:0004107: chorismate synthase activity	0.00E+00
10	GO:0003756: protein disulfide isomerase activity	2.44E-11
11	GO:0051082: unfolded protein binding	1.22E-07
12	GO:0043021: ribonucleoprotein complex binding	2.51E-06
13	GO:0004449: isocitrate dehydrogenase (NAD+) activity	2.08E-05
14	GO:0005460: UDP-glucose transmembrane transporter activity	2.08E-05
15	GO:0016004: phospholipase activator activity	3.78E-05
16	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.74E-05
17	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	6.05E-05
18	GO:0005459: UDP-galactose transmembrane transporter activity	6.05E-05
19	GO:0003746: translation elongation factor activity	7.43E-05
20	GO:0004298: threonine-type endopeptidase activity	8.49E-05
21	GO:0030515: snoRNA binding	1.62E-04
22	GO:0008121: ubiquinol-cytochrome-c reductase activity	1.62E-04
23	GO:0008909: isochorismate synthase activity	2.32E-04
24	GO:0003977: UDP-N-acetylglucosamine diphosphorylase activity	2.32E-04
25	GO:1990259: histone-glutamine methyltransferase activity	2.32E-04
26	GO:0052630: UDP-N-acetylgalactosamine diphosphorylase activity	2.32E-04
27	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	2.32E-04
28	GO:0033984: indole-3-glycerol-phosphate lyase activity	2.32E-04
29	GO:0097367: carbohydrate derivative binding	2.32E-04
30	GO:0008446: GDP-mannose 4,6-dehydratase activity	2.32E-04
31	GO:0048037: cofactor binding	2.32E-04
32	GO:0005525: GTP binding	4.37E-04
33	GO:0008233: peptidase activity	4.37E-04
34	GO:0004776: succinate-CoA ligase (GDP-forming) activity	5.15E-04
35	GO:0019781: NEDD8 activating enzyme activity	5.15E-04
36	GO:0004617: phosphoglycerate dehydrogenase activity	5.15E-04
37	GO:0004775: succinate-CoA ligase (ADP-forming) activity	5.15E-04
38	GO:0000166: nucleotide binding	6.10E-04
39	GO:0008649: rRNA methyltransferase activity	8.37E-04
40	GO:0004816: asparagine-tRNA ligase activity	8.37E-04
41	GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity	8.37E-04
42	GO:0004049: anthranilate synthase activity	8.37E-04
43	GO:0000030: mannosyltransferase activity	8.37E-04
44	GO:0016531: copper chaperone activity	8.37E-04
45	GO:0004148: dihydrolipoyl dehydrogenase activity	8.37E-04
46	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	8.37E-04
47	GO:0043023: ribosomal large subunit binding	1.19E-03
48	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	1.19E-03
49	GO:0051287: NAD binding	1.28E-03
50	GO:0004576: oligosaccharyl transferase activity	1.59E-03
51	GO:0004834: tryptophan synthase activity	1.59E-03
52	GO:0008641: small protein activating enzyme activity	2.03E-03
53	GO:0010181: FMN binding	2.09E-03
54	GO:0015035: protein disulfide oxidoreductase activity	2.38E-03
55	GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity	2.50E-03
56	GO:0005261: cation channel activity	3.00E-03
57	GO:0004656: procollagen-proline 4-dioxygenase activity	3.00E-03
58	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	3.00E-03
59	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.00E-03
60	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.00E-03
61	GO:0043022: ribosome binding	4.10E-03
62	GO:0015288: porin activity	4.10E-03
63	GO:0005507: copper ion binding	4.56E-03
64	GO:0008135: translation factor activity, RNA binding	4.70E-03
65	GO:0008308: voltage-gated anion channel activity	4.70E-03
66	GO:0050897: cobalt ion binding	5.21E-03
67	GO:0004568: chitinase activity	6.65E-03
68	GO:0005509: calcium ion binding	7.32E-03
69	GO:0044183: protein binding involved in protein folding	7.35E-03
70	GO:0004129: cytochrome-c oxidase activity	7.35E-03
71	GO:0005262: calcium channel activity	8.84E-03
72	GO:0003735: structural constituent of ribosome	9.48E-03
73	GO:0004970: ionotropic glutamate receptor activity	1.04E-02
74	GO:0005217: intracellular ligand-gated ion channel activity	1.04E-02
75	GO:0004190: aspartic-type endopeptidase activity	1.04E-02
76	GO:0008061: chitin binding	1.04E-02
77	GO:0051536: iron-sulfur cluster binding	1.21E-02
78	GO:0031418: L-ascorbic acid binding	1.21E-02
79	GO:0016746: transferase activity, transferring acyl groups	1.46E-02
80	GO:0016779: nucleotidyltransferase activity	1.48E-02
81	GO:0003729: mRNA binding	1.67E-02
82	GO:0004791: thioredoxin-disulfide reductase activity	2.07E-02
83	GO:0016853: isomerase activity	2.07E-02
84	GO:0008565: protein transporter activity	2.13E-02
85	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.51E-02
86	GO:0008483: transaminase activity	2.74E-02
87	GO:0016597: amino acid binding	2.86E-02
88	GO:0003743: translation initiation factor activity	2.87E-02
89	GO:0030247: polysaccharide binding	3.34E-02
90	GO:0004004: ATP-dependent RNA helicase activity	3.34E-02
91	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.47E-02
92	GO:0015238: drug transmembrane transporter activity	3.72E-02
93	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.25E-02
94	GO:0000149: SNARE binding	4.53E-02
95	GO:0051539: 4 iron, 4 sulfur cluster binding	4.67E-02
96	GO:0050661: NADP binding	4.67E-02

Rank	GO Term	Adjusted P value
1	GO:0005832: chaperonin-containing T-complex	0.00E+00
2	GO:0000327: lytic vacuole within protein storage vacuole	0.00E+00
3	GO:0019034: viral replication complex	0.00E+00
4	GO:0045252: oxoglutarate dehydrogenase complex	0.00E+00
5	GO:0042719: mitochondrial intermembrane space protein transporter complex	0.00E+00
6	GO:0005783: endoplasmic reticulum	7.68E-18
7	GO:0005788: endoplasmic reticulum lumen	3.35E-15
8	GO:0005774: vacuolar membrane	2.52E-08
9	GO:0005739: mitochondrion	3.96E-08
10	GO:0070545: PeBoW complex	2.51E-06
11	GO:0030687: preribosome, large subunit precursor	2.72E-06
12	GO:0005829: cytosol	3.72E-05
13	GO:0008250: oligosaccharyltransferase complex	6.05E-05
14	GO:0005839: proteasome core complex	8.49E-05
15	GO:0031428: box C/D snoRNP complex	8.88E-05
16	GO:0009507: chloroplast	1.32E-04
17	GO:0005789: endoplasmic reticulum membrane	1.40E-04
18	GO:0005730: nucleolus	1.91E-04
19	GO:0000502: proteasome complex	2.00E-04
20	GO:0019773: proteasome core complex, alpha-subunit complex	2.55E-04
21	GO:0009536: plastid	3.06E-04
22	GO:0032040: small-subunit processome	5.68E-04
23	GO:0005759: mitochondrial matrix	7.19E-04
24	GO:0005750: mitochondrial respiratory chain complex III	7.26E-04
25	GO:0030176: integral component of endoplasmic reticulum membrane	8.11E-04
26	GO:0005672: transcription factor TFIIA complex	8.37E-04
27	GO:0005758: mitochondrial intermembrane space	9.95E-04
28	GO:0009505: plant-type cell wall	1.14E-03
29	GO:0005773: vacuole	1.50E-03
30	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	1.59E-03
31	GO:0030660: Golgi-associated vesicle membrane	1.59E-03
32	GO:0005794: Golgi apparatus	1.77E-03
33	GO:0005746: mitochondrial respiratory chain	2.03E-03
34	GO:0032588: trans-Golgi network membrane	2.50E-03
35	GO:0005762: mitochondrial large ribosomal subunit	3.00E-03
36	GO:0030173: integral component of Golgi membrane	3.00E-03
37	GO:0005623: cell	3.15E-03
38	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	4.10E-03
39	GO:0000326: protein storage vacuole	4.70E-03
40	GO:0046930: pore complex	4.70E-03
41	GO:0016020: membrane	5.02E-03
42	GO:0031901: early endosome membrane	5.32E-03
43	GO:0015030: Cajal body	5.97E-03
44	GO:0005740: mitochondrial envelope	6.65E-03
45	GO:0005765: lysosomal membrane	7.35E-03
46	GO:0005852: eukaryotic translation initiation factor 3 complex	7.35E-03
47	GO:0009506: plasmodesma	7.90E-03
48	GO:0022626: cytosolic ribosome	8.96E-03
49	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	9.00E-03
50	GO:0043234: protein complex	1.13E-02
51	GO:0005747: mitochondrial respiratory chain complex I	1.21E-02
52	GO:0005834: heterotrimeric G-protein complex	1.25E-02
53	GO:0005741: mitochondrial outer membrane	1.39E-02
54	GO:0016592: mediator complex	2.40E-02
55	GO:0005886: plasma membrane	2.49E-02
56	GO:0005840: ribosome	2.95E-02
57	GO:0048046: apoplast	2.98E-02
58	GO:0005618: cell wall	3.49E-02
59	GO:0015934: large ribosomal subunit	3.98E-02
60	GO:0031969: chloroplast membrane	4.69E-02
61	GO:0031201: SNARE complex	4.81E-02