co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G71695

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090627: plant epidermal cell differentiation	0.00E+00
2	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
3	GO:0007638: mechanosensory behavior	0.00E+00
4	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
5	GO:0090042: tubulin deacetylation	0.00E+00
6	GO:0009773: photosynthetic electron transport in photosystem I	2.96E-07
7	GO:0009913: epidermal cell differentiation	9.09E-07
8	GO:0015979: photosynthesis	1.06E-05
9	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.00E-05
10	GO:0006546: glycine catabolic process	3.66E-05
11	GO:0006833: water transport	5.10E-05
12	GO:0006810: transport	1.13E-04
13	GO:0034220: ion transmembrane transport	1.52E-04
14	GO:0008610: lipid biosynthetic process	2.00E-04
15	GO:0034337: RNA folding	2.27E-04
16	GO:0060627: regulation of vesicle-mediated transport	2.27E-04
17	GO:0015808: L-alanine transport	2.27E-04
18	GO:0010480: microsporocyte differentiation	2.27E-04
19	GO:0031338: regulation of vesicle fusion	2.27E-04
20	GO:0000481: maturation of 5S rRNA	2.27E-04
21	GO:0080051: cutin transport	2.27E-04
22	GO:0006824: cobalt ion transport	2.27E-04
23	GO:0010205: photoinhibition	3.56E-04
24	GO:0009638: phototropism	3.56E-04
25	GO:0015804: neutral amino acid transport	5.05E-04
26	GO:1900871: chloroplast mRNA modification	5.05E-04
27	GO:0010541: acropetal auxin transport	5.05E-04
28	GO:0098712: L-glutamate import across plasma membrane	5.05E-04
29	GO:0015908: fatty acid transport	5.05E-04
30	GO:0034755: iron ion transmembrane transport	5.05E-04
31	GO:0006518: peptide metabolic process	8.21E-04
32	GO:0090630: activation of GTPase activity	8.21E-04
33	GO:2001295: malonyl-CoA biosynthetic process	8.21E-04
34	GO:0006013: mannose metabolic process	8.21E-04
35	GO:0010160: formation of animal organ boundary	8.21E-04
36	GO:0008152: metabolic process	1.01E-03
37	GO:0007231: osmosensory signaling pathway	1.17E-03
38	GO:0071484: cellular response to light intensity	1.17E-03
39	GO:0051639: actin filament network formation	1.17E-03
40	GO:1901332: negative regulation of lateral root development	1.17E-03
41	GO:0080170: hydrogen peroxide transmembrane transport	1.17E-03
42	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.17E-03
43	GO:0009409: response to cold	1.26E-03
44	GO:0033500: carbohydrate homeostasis	1.56E-03
45	GO:0031122: cytoplasmic microtubule organization	1.56E-03
46	GO:0051764: actin crosslink formation	1.56E-03
47	GO:0019464: glycine decarboxylation via glycine cleavage system	1.56E-03
48	GO:0045727: positive regulation of translation	1.56E-03
49	GO:0015994: chlorophyll metabolic process	1.56E-03
50	GO:0010021: amylopectin biosynthetic process	1.56E-03
51	GO:0010222: stem vascular tissue pattern formation	1.56E-03
52	GO:0009958: positive gravitropism	1.89E-03
53	GO:0010117: photoprotection	1.99E-03
54	GO:0048497: maintenance of floral organ identity	1.99E-03
55	GO:0006461: protein complex assembly	1.99E-03
56	GO:0048825: cotyledon development	2.18E-03
57	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.23E-03
58	GO:0060918: auxin transport	2.45E-03
59	GO:0010256: endomembrane system organization	2.45E-03
60	GO:0042549: photosystem II stabilization	2.45E-03
61	GO:0006751: glutathione catabolic process	2.45E-03
62	GO:0010027: thylakoid membrane organization	3.36E-03
63	GO:0043090: amino acid import	3.47E-03
64	GO:1900057: positive regulation of leaf senescence	3.47E-03
65	GO:0009645: response to low light intensity stimulus	3.47E-03
66	GO:0048437: floral organ development	3.47E-03
67	GO:0010196: nonphotochemical quenching	3.47E-03
68	GO:0098869: cellular oxidant detoxification	3.47E-03
69	GO:0055085: transmembrane transport	3.54E-03
70	GO:0006633: fatty acid biosynthetic process	3.93E-03
71	GO:0015995: chlorophyll biosynthetic process	3.95E-03
72	GO:0032508: DNA duplex unwinding	4.02E-03
73	GO:0071482: cellular response to light stimulus	4.60E-03
74	GO:0032544: plastid translation	4.60E-03
75	GO:0009657: plastid organization	4.60E-03
76	GO:0010218: response to far red light	4.82E-03
77	GO:0090305: nucleic acid phosphodiester bond hydrolysis	5.22E-03
78	GO:0010206: photosystem II repair	5.22E-03
79	GO:0006779: porphyrin-containing compound biosynthetic process	5.85E-03
80	GO:0006535: cysteine biosynthetic process from serine	6.51E-03
81	GO:0006782: protoporphyrinogen IX biosynthetic process	6.51E-03
82	GO:0019538: protein metabolic process	6.51E-03
83	GO:0009807: lignan biosynthetic process	7.20E-03
84	GO:0000038: very long-chain fatty acid metabolic process	7.20E-03
85	GO:1903507: negative regulation of nucleic acid-templated transcription	7.20E-03
86	GO:0006816: calcium ion transport	7.20E-03
87	GO:0048229: gametophyte development	7.20E-03
88	GO:0009644: response to high light intensity	7.73E-03
89	GO:0008361: regulation of cell size	7.92E-03
90	GO:0006820: anion transport	7.92E-03
91	GO:0016024: CDP-diacylglycerol biosynthetic process	7.92E-03
92	GO:0009767: photosynthetic electron transport chain	8.66E-03
93	GO:0010588: cotyledon vascular tissue pattern formation	8.66E-03
94	GO:0010102: lateral root morphogenesis	8.66E-03
95	GO:0018107: peptidyl-threonine phosphorylation	8.66E-03
96	GO:0009718: anthocyanin-containing compound biosynthetic process	8.66E-03
97	GO:0010075: regulation of meristem growth	8.66E-03
98	GO:0009723: response to ethylene	9.28E-03
99	GO:0010540: basipetal auxin transport	9.42E-03
100	GO:0009934: regulation of meristem structural organization	9.42E-03
101	GO:0010143: cutin biosynthetic process	9.42E-03
102	GO:0009585: red, far-red light phototransduction	9.64E-03
103	GO:0009733: response to auxin	9.79E-03
104	GO:0010030: positive regulation of seed germination	1.02E-02
105	GO:0070588: calcium ion transmembrane transport	1.02E-02
106	GO:0006636: unsaturated fatty acid biosynthetic process	1.10E-02
107	GO:0019344: cysteine biosynthetic process	1.19E-02
108	GO:0051017: actin filament bundle assembly	1.19E-02
109	GO:0009768: photosynthesis, light harvesting in photosystem I	1.27E-02
110	GO:0016575: histone deacetylation	1.27E-02
111	GO:0007017: microtubule-based process	1.27E-02
112	GO:0061077: chaperone-mediated protein folding	1.36E-02
113	GO:0009624: response to nematode	1.38E-02
114	GO:0018105: peptidyl-serine phosphorylation	1.42E-02
115	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.45E-02
116	GO:0010017: red or far-red light signaling pathway	1.45E-02
117	GO:0035428: hexose transmembrane transport	1.45E-02
118	GO:0009686: gibberellin biosynthetic process	1.54E-02
119	GO:0032259: methylation	1.58E-02
120	GO:0016042: lipid catabolic process	1.60E-02
121	GO:0048443: stamen development	1.64E-02
122	GO:0009306: protein secretion	1.64E-02
123	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.73E-02
124	GO:0048653: anther development	1.83E-02
125	GO:0042631: cellular response to water deprivation	1.83E-02
126	GO:0000413: protein peptidyl-prolyl isomerization	1.83E-02
127	GO:0042335: cuticle development	1.83E-02
128	GO:0009845: seed germination	1.87E-02
129	GO:0010268: brassinosteroid homeostasis	1.93E-02
130	GO:0046323: glucose import	1.93E-02
131	GO:0019252: starch biosynthetic process	2.14E-02
132	GO:0016132: brassinosteroid biosynthetic process	2.24E-02
133	GO:0010583: response to cyclopentenone	2.35E-02
134	GO:0009651: response to salt stress	2.43E-02
135	GO:0030163: protein catabolic process	2.46E-02
136	GO:0071281: cellular response to iron ion	2.46E-02
137	GO:0009734: auxin-activated signaling pathway	2.56E-02
138	GO:0009639: response to red or far red light	2.57E-02
139	GO:0016125: sterol metabolic process	2.57E-02
140	GO:0009416: response to light stimulus	3.41E-02
141	GO:0018298: protein-chromophore linkage	3.52E-02
142	GO:0009817: defense response to fungus, incompatible interaction	3.52E-02
143	GO:0010311: lateral root formation	3.65E-02
144	GO:0035556: intracellular signal transduction	3.65E-02
145	GO:0048527: lateral root development	3.90E-02
146	GO:0009637: response to blue light	4.17E-02
147	GO:0030001: metal ion transport	4.57E-02
148	GO:0005975: carbohydrate metabolic process	4.82E-02
149	GO:0009640: photomorphogenesis	4.98E-02
150	GO:0010114: response to red light	4.98E-02
151	GO:0009926: auxin polar transport	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
2	GO:0043014: alpha-tubulin binding	0.00E+00
3	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
4	GO:0051721: protein phosphatase 2A binding	0.00E+00
5	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
6	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
7	GO:0042903: tubulin deacetylase activity	0.00E+00
8	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
9	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	3.66E-05
10	GO:0005528: FK506 binding	6.01E-05
11	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.48E-04
12	GO:0045485: omega-6 fatty acid desaturase activity	2.27E-04
13	GO:0008568: microtubule-severing ATPase activity	2.27E-04
14	GO:0015194: L-serine transmembrane transporter activity	2.27E-04
15	GO:0015245: fatty acid transporter activity	2.27E-04
16	GO:0051777: ent-kaurenoate oxidase activity	2.27E-04
17	GO:0015250: water channel activity	3.74E-04
18	GO:0003839: gamma-glutamylcyclotransferase activity	5.05E-04
19	GO:0004047: aminomethyltransferase activity	5.05E-04
20	GO:0033201: alpha-1,4-glucan synthase activity	5.05E-04
21	GO:0015180: L-alanine transmembrane transporter activity	5.05E-04
22	GO:0050017: L-3-cyanoalanine synthase activity	5.05E-04
23	GO:0010283: pinoresinol reductase activity	5.05E-04
24	GO:0047746: chlorophyllase activity	5.05E-04
25	GO:0016868: intramolecular transferase activity, phosphotransferases	5.05E-04
26	GO:0015193: L-proline transmembrane transporter activity	8.21E-04
27	GO:0004075: biotin carboxylase activity	8.21E-04
28	GO:0004373: glycogen (starch) synthase activity	8.21E-04
29	GO:0030267: glyoxylate reductase (NADP) activity	8.21E-04
30	GO:0016787: hydrolase activity	1.12E-03
31	GO:0001872: (1->3)-beta-D-glucan binding	1.17E-03
32	GO:0015186: L-glutamine transmembrane transporter activity	1.17E-03
33	GO:0048487: beta-tubulin binding	1.17E-03
34	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.17E-03
35	GO:0019201: nucleotide kinase activity	1.17E-03
36	GO:0015175: neutral amino acid transmembrane transporter activity	1.17E-03
37	GO:0009011: starch synthase activity	1.56E-03
38	GO:0005313: L-glutamate transmembrane transporter activity	1.56E-03
39	GO:0008381: mechanically-gated ion channel activity	1.99E-03
40	GO:0017137: Rab GTPase binding	1.99E-03
41	GO:0003989: acetyl-CoA carboxylase activity	1.99E-03
42	GO:0048038: quinone binding	2.33E-03
43	GO:0042578: phosphoric ester hydrolase activity	2.45E-03
44	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.45E-03
45	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.45E-03
46	GO:0004124: cysteine synthase activity	2.94E-03
47	GO:0004017: adenylate kinase activity	2.94E-03
48	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	2.94E-03
49	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	2.94E-03
50	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	2.94E-03
51	GO:0004559: alpha-mannosidase activity	2.94E-03
52	GO:0004620: phospholipase activity	3.47E-03
53	GO:0016491: oxidoreductase activity	3.99E-03
54	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	4.60E-03
55	GO:0005096: GTPase activator activity	4.60E-03
56	GO:0005381: iron ion transmembrane transporter activity	5.85E-03
57	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	6.00E-03
58	GO:0047372: acylglycerol lipase activity	7.20E-03
59	GO:0015386: potassium:proton antiporter activity	7.20E-03
60	GO:0008168: methyltransferase activity	7.35E-03
61	GO:0005515: protein binding	7.66E-03
62	GO:0016788: hydrolase activity, acting on ester bonds	7.90E-03
63	GO:0005262: calcium channel activity	8.66E-03
64	GO:0004565: beta-galactosidase activity	8.66E-03
65	GO:0010329: auxin efflux transmembrane transporter activity	8.66E-03
66	GO:0008266: poly(U) RNA binding	9.42E-03
67	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.10E-02
68	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.10E-02
69	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.10E-02
70	GO:0031409: pigment binding	1.10E-02
71	GO:0052689: carboxylic ester hydrolase activity	1.15E-02
72	GO:0004407: histone deacetylase activity	1.19E-02
73	GO:0003714: transcription corepressor activity	1.19E-02
74	GO:0015079: potassium ion transmembrane transporter activity	1.27E-02
75	GO:0033612: receptor serine/threonine kinase binding	1.36E-02
76	GO:0004707: MAP kinase activity	1.36E-02
77	GO:0016746: transferase activity, transferring acyl groups	1.42E-02
78	GO:0005355: glucose transmembrane transporter activity	2.03E-02
79	GO:0050662: coenzyme binding	2.03E-02
80	GO:0005509: calcium ion binding	2.34E-02
81	GO:0004518: nuclease activity	2.35E-02
82	GO:0051015: actin filament binding	2.46E-02
83	GO:0008289: lipid binding	2.52E-02
84	GO:0016791: phosphatase activity	2.57E-02
85	GO:0005200: structural constituent of cytoskeleton	2.68E-02
86	GO:0008483: transaminase activity	2.68E-02
87	GO:0016168: chlorophyll binding	3.03E-02
88	GO:0042802: identical protein binding	3.03E-02
89	GO:0009931: calcium-dependent protein serine/threonine kinase activity	3.15E-02
90	GO:0030247: polysaccharide binding	3.27E-02
91	GO:0004721: phosphoprotein phosphatase activity	3.27E-02
92	GO:0004683: calmodulin-dependent protein kinase activity	3.27E-02
93	GO:0008236: serine-type peptidase activity	3.40E-02
94	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.52E-02
95	GO:0004222: metalloendopeptidase activity	3.77E-02
96	GO:0030145: manganese ion binding	3.90E-02
97	GO:0003993: acid phosphatase activity	4.30E-02

Rank	GO Term	Adjusted P value
1	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
2	GO:0009534: chloroplast thylakoid	1.36E-20
3	GO:0009535: chloroplast thylakoid membrane	2.34E-18
4	GO:0009507: chloroplast	3.81E-18
5	GO:0009941: chloroplast envelope	7.05E-14
6	GO:0009570: chloroplast stroma	1.93E-12
7	GO:0009543: chloroplast thylakoid lumen	4.14E-10
8	GO:0030095: chloroplast photosystem II	9.98E-09
9	GO:0009579: thylakoid	3.93E-08
10	GO:0009533: chloroplast stromal thylakoid	2.58E-06
11	GO:0031977: thylakoid lumen	6.00E-06
12	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	8.05E-06
13	GO:0010287: plastoglobule	5.32E-05
14	GO:0009654: photosystem II oxygen evolving complex	7.03E-05
15	GO:0019898: extrinsic component of membrane	2.07E-04
16	GO:0009782: photosystem I antenna complex	2.27E-04
17	GO:0009344: nitrite reductase complex [NAD(P)H]	2.27E-04
18	GO:0009897: external side of plasma membrane	8.21E-04
19	GO:0042651: thylakoid membrane	1.06E-03
20	GO:0009531: secondary cell wall	1.17E-03
21	GO:0005960: glycine cleavage complex	1.17E-03
22	GO:0032432: actin filament bundle	1.17E-03
23	GO:0031969: chloroplast membrane	2.12E-03
24	GO:0009523: photosystem II	2.18E-03
25	GO:0009501: amyloplast	4.02E-03
26	GO:0009538: photosystem I reaction center	4.02E-03
27	GO:0005886: plasma membrane	4.92E-03
28	GO:0045298: tubulin complex	5.22E-03
29	GO:0008180: COP9 signalosome	5.22E-03
30	GO:0042644: chloroplast nucleoid	5.22E-03
31	GO:0005887: integral component of plasma membrane	6.10E-03
32	GO:0005884: actin filament	7.20E-03
33	GO:0032040: small-subunit processome	7.92E-03
34	GO:0009508: plastid chromosome	8.66E-03
35	GO:0030076: light-harvesting complex	1.02E-02
36	GO:0048046: apoplast	1.08E-02
37	GO:0009505: plant-type cell wall	1.18E-02
38	GO:0016021: integral component of membrane	1.49E-02
39	GO:0016020: membrane	1.62E-02
40	GO:0009295: nucleoid	2.68E-02
41	GO:0046658: anchored component of plasma membrane	3.16E-02
42	GO:0019005: SCF ubiquitin ligase complex	3.52E-02