Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G69040

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042593: glucose homeostasis0.00E+00
2GO:0061157: mRNA destabilization0.00E+00
3GO:1901918: negative regulation of exoribonuclease activity0.00E+00
4GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
5GO:1901698: response to nitrogen compound0.00E+00
6GO:0006223: uracil salvage0.00E+00
7GO:2000121: regulation of removal of superoxide radicals0.00E+00
8GO:0061635: regulation of protein complex stability0.00E+00
9GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
10GO:0016553: base conversion or substitution editing0.00E+00
11GO:0006399: tRNA metabolic process0.00E+00
12GO:0015979: photosynthesis1.79E-12
13GO:0015995: chlorophyll biosynthetic process8.49E-12
14GO:0006412: translation3.33E-11
15GO:0042254: ribosome biogenesis1.30E-09
16GO:0010207: photosystem II assembly3.42E-06
17GO:0009735: response to cytokinin2.15E-05
18GO:0010206: photosystem II repair2.50E-05
19GO:0006546: glycine catabolic process8.11E-05
20GO:0010027: thylakoid membrane organization9.68E-05
21GO:0032543: mitochondrial translation1.27E-04
22GO:0042549: photosystem II stabilization1.82E-04
23GO:1901259: chloroplast rRNA processing2.46E-04
24GO:0034337: RNA folding3.63E-04
25GO:0071588: hydrogen peroxide mediated signaling pathway3.63E-04
26GO:0010729: positive regulation of hydrogen peroxide biosynthetic process3.63E-04
27GO:0043489: RNA stabilization3.63E-04
28GO:0046520: sphingoid biosynthetic process3.63E-04
29GO:0000413: protein peptidyl-prolyl isomerization3.84E-04
30GO:0009657: plastid organization4.91E-04
31GO:0032544: plastid translation4.91E-04
32GO:0006783: heme biosynthetic process5.89E-04
33GO:0001736: establishment of planar polarity7.89E-04
34GO:0006782: protoporphyrinogen IX biosynthetic process8.10E-04
35GO:0009773: photosynthetic electron transport in photosystem I9.32E-04
36GO:0009658: chloroplast organization9.86E-04
37GO:0015706: nitrate transport1.06E-03
38GO:0016024: CDP-diacylglycerol biosynthetic process1.06E-03
39GO:0010411: xyloglucan metabolic process1.09E-03
40GO:0090391: granum assembly1.28E-03
41GO:0006013: mannose metabolic process1.28E-03
42GO:0015840: urea transport1.28E-03
43GO:0071705: nitrogen compound transport1.28E-03
44GO:0045493: xylan catabolic process1.28E-03
45GO:0010167: response to nitrate1.52E-03
46GO:0006833: water transport1.69E-03
47GO:1902476: chloride transmembrane transport1.84E-03
48GO:0051513: regulation of monopolar cell growth1.84E-03
49GO:0071484: cellular response to light intensity1.84E-03
50GO:0034059: response to anoxia1.84E-03
51GO:0080170: hydrogen peroxide transmembrane transport1.84E-03
52GO:0009647: skotomorphogenesis1.84E-03
53GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity1.84E-03
54GO:0006424: glutamyl-tRNA aminoacylation1.84E-03
55GO:0055070: copper ion homeostasis1.84E-03
56GO:2001141: regulation of RNA biosynthetic process1.84E-03
57GO:0007017: microtubule-based process2.07E-03
58GO:0009768: photosynthesis, light harvesting in photosystem I2.07E-03
59GO:0055114: oxidation-reduction process2.28E-03
60GO:0010114: response to red light2.30E-03
61GO:0015976: carbon utilization2.47E-03
62GO:0019464: glycine decarboxylation via glycine cleavage system2.47E-03
63GO:0071249: cellular response to nitrate2.47E-03
64GO:0015994: chlorophyll metabolic process2.47E-03
65GO:2000122: negative regulation of stomatal complex development2.47E-03
66GO:0030104: water homeostasis2.47E-03
67GO:0044206: UMP salvage2.47E-03
68GO:0010037: response to carbon dioxide2.47E-03
69GO:0009247: glycolipid biosynthetic process3.16E-03
70GO:0034052: positive regulation of plant-type hypersensitive response3.16E-03
71GO:0043097: pyrimidine nucleoside salvage3.16E-03
72GO:0006461: protein complex assembly3.16E-03
73GO:0034220: ion transmembrane transport3.46E-03
74GO:0006655: phosphatidylglycerol biosynthetic process3.91E-03
75GO:1902456: regulation of stomatal opening3.91E-03
76GO:0010190: cytochrome b6f complex assembly3.91E-03
77GO:0006206: pyrimidine nucleobase metabolic process3.91E-03
78GO:0032973: amino acid export3.91E-03
79GO:0000302: response to reactive oxygen species4.60E-03
80GO:0009955: adaxial/abaxial pattern specification4.71E-03
81GO:0042372: phylloquinone biosynthetic process4.71E-03
82GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)4.71E-03
83GO:0017148: negative regulation of translation4.71E-03
84GO:0006694: steroid biosynthetic process4.71E-03
85GO:0009854: oxidative photosynthetic carbon pathway4.71E-03
86GO:0010019: chloroplast-nucleus signaling pathway4.71E-03
87GO:0010555: response to mannitol4.71E-03
88GO:0032502: developmental process4.91E-03
89GO:0009772: photosynthetic electron transport in photosystem II5.56E-03
90GO:0043090: amino acid import5.56E-03
91GO:0006821: chloride transport5.56E-03
92GO:0010196: nonphotochemical quenching5.56E-03
93GO:0009645: response to low light intensity stimulus5.56E-03
94GO:0010444: guard mother cell differentiation5.56E-03
95GO:0009409: response to cold5.75E-03
96GO:0080167: response to karrikin6.05E-03
97GO:0009819: drought recovery6.46E-03
98GO:0009642: response to light intensity6.46E-03
99GO:0043068: positive regulation of programmed cell death6.46E-03
100GO:0042255: ribosome assembly6.46E-03
101GO:0006605: protein targeting6.46E-03
102GO:0019375: galactolipid biosynthetic process6.46E-03
103GO:0009231: riboflavin biosynthetic process6.46E-03
104GO:0006810: transport6.85E-03
105GO:0009793: embryo development ending in seed dormancy6.99E-03
106GO:0009932: cell tip growth7.41E-03
107GO:0071482: cellular response to light stimulus7.41E-03
108GO:0009808: lignin metabolic process7.41E-03
109GO:0045454: cell redox homeostasis7.95E-03
110GO:0042744: hydrogen peroxide catabolic process8.31E-03
111GO:0080144: amino acid homeostasis8.41E-03
112GO:0018298: protein-chromophore linkage8.69E-03
113GO:0010205: photoinhibition9.46E-03
114GO:0006779: porphyrin-containing compound biosynthetic process9.46E-03
115GO:0009631: cold acclimation1.01E-02
116GO:0006949: syncytium formation1.05E-02
117GO:0048829: root cap development1.05E-02
118GO:0045490: pectin catabolic process1.06E-02
119GO:0009637: response to blue light1.10E-02
120GO:0034599: cellular response to oxidative stress1.16E-02
121GO:0010015: root morphogenesis1.17E-02
122GO:0009698: phenylpropanoid metabolic process1.17E-02
123GO:0006352: DNA-templated transcription, initiation1.17E-02
124GO:0009750: response to fructose1.17E-02
125GO:0018119: peptidyl-cysteine S-nitrosylation1.17E-02
126GO:0048765: root hair cell differentiation1.17E-02
127GO:0006790: sulfur compound metabolic process1.29E-02
128GO:0009725: response to hormone1.41E-02
129GO:0006006: glucose metabolic process1.41E-02
130GO:0050826: response to freezing1.41E-02
131GO:0009640: photomorphogenesis1.43E-02
132GO:0042546: cell wall biogenesis1.49E-02
133GO:0010143: cutin biosynthetic process1.53E-02
134GO:0019253: reductive pentose-phosphate cycle1.53E-02
135GO:0046688: response to copper ion1.66E-02
136GO:0010030: positive regulation of seed germination1.66E-02
137GO:0046854: phosphatidylinositol phosphorylation1.66E-02
138GO:0019762: glucosinolate catabolic process1.80E-02
139GO:0006636: unsaturated fatty acid biosynthetic process1.80E-02
140GO:0019344: cysteine biosynthetic process1.93E-02
141GO:0009116: nucleoside metabolic process1.93E-02
142GO:0000027: ribosomal large subunit assembly1.93E-02
143GO:0006418: tRNA aminoacylation for protein translation2.07E-02
144GO:0046686: response to cadmium ion2.12E-02
145GO:0048511: rhythmic process2.22E-02
146GO:0019915: lipid storage2.22E-02
147GO:0061077: chaperone-mediated protein folding2.22E-02
148GO:0009723: response to ethylene2.22E-02
149GO:0003333: amino acid transmembrane transport2.22E-02
150GO:0009814: defense response, incompatible interaction2.37E-02
151GO:0035428: hexose transmembrane transport2.37E-02
152GO:0006012: galactose metabolic process2.52E-02
153GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.52E-02
154GO:0009411: response to UV2.52E-02
155GO:0009740: gibberellic acid mediated signaling pathway2.59E-02
156GO:0042742: defense response to bacterium2.62E-02
157GO:0006284: base-excision repair2.67E-02
158GO:0009306: protein secretion2.67E-02
159GO:0009624: response to nematode2.75E-02
160GO:0006396: RNA processing2.83E-02
161GO:0010087: phloem or xylem histogenesis2.99E-02
162GO:0009958: positive gravitropism3.16E-02
163GO:0046323: glucose import3.16E-02
164GO:0042752: regulation of circadian rhythm3.32E-02
165GO:0009749: response to glucose3.49E-02
166GO:0002229: defense response to oomycetes3.67E-02
167GO:0016132: brassinosteroid biosynthetic process3.67E-02
168GO:0006457: protein folding3.76E-02
169GO:0009651: response to salt stress3.83E-02
170GO:0010583: response to cyclopentenone3.84E-02
171GO:0009790: embryo development4.01E-02
172GO:0030163: protein catabolic process4.02E-02
173GO:0009828: plant-type cell wall loosening4.20E-02
174GO:0009451: RNA modification4.83E-02
RankGO TermAdjusted P value
1GO:0050614: delta24-sterol reductase activity0.00E+00
2GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
3GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
4GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
5GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity0.00E+00
6GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
7GO:0008887: glycerate kinase activity0.00E+00
8GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
9GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
10GO:0004822: isoleucine-tRNA ligase activity0.00E+00
11GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
12GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
13GO:0019843: rRNA binding1.42E-20
14GO:0003735: structural constituent of ribosome1.67E-14
15GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.18E-10
16GO:0005528: FK506 binding1.72E-07
17GO:0016851: magnesium chelatase activity2.44E-07
18GO:0051920: peroxiredoxin activity5.29E-06
19GO:0016209: antioxidant activity1.27E-05
20GO:0004130: cytochrome-c peroxidase activity1.82E-04
21GO:0003727: single-stranded RNA binding3.11E-04
22GO:0000170: sphingosine hydroxylase activity3.63E-04
23GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity3.63E-04
24GO:0004655: porphobilinogen synthase activity3.63E-04
25GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity3.63E-04
26GO:0009671: nitrate:proton symporter activity3.63E-04
27GO:0015200: methylammonium transmembrane transporter activity3.63E-04
28GO:0004853: uroporphyrinogen decarboxylase activity3.63E-04
29GO:0045485: omega-6 fatty acid desaturase activity3.63E-04
30GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity7.89E-04
31GO:0004047: aminomethyltransferase activity7.89E-04
32GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity7.89E-04
33GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity7.89E-04
34GO:0042284: sphingolipid delta-4 desaturase activity7.89E-04
35GO:0016630: protochlorophyllide reductase activity7.89E-04
36GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity7.89E-04
37GO:0008967: phosphoglycolate phosphatase activity7.89E-04
38GO:0047746: chlorophyllase activity7.89E-04
39GO:0015250: water channel activity8.88E-04
40GO:0004601: peroxidase activity9.86E-04
41GO:0010277: chlorophyllide a oxygenase [overall] activity1.28E-03
42GO:0002161: aminoacyl-tRNA editing activity1.28E-03
43GO:0004148: dihydrolipoyl dehydrogenase activity1.28E-03
44GO:0003935: GTP cyclohydrolase II activity1.28E-03
45GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.28E-03
46GO:0008266: poly(U) RNA binding1.36E-03
47GO:0031409: pigment binding1.69E-03
48GO:0004375: glycine dehydrogenase (decarboxylating) activity1.84E-03
49GO:0035250: UDP-galactosyltransferase activity1.84E-03
50GO:0001053: plastid sigma factor activity2.47E-03
51GO:0004845: uracil phosphoribosyltransferase activity2.47E-03
52GO:0010011: auxin binding2.47E-03
53GO:0016987: sigma factor activity2.47E-03
54GO:0010328: auxin influx transmembrane transporter activity2.47E-03
55GO:1990137: plant seed peroxidase activity2.47E-03
56GO:0009044: xylan 1,4-beta-xylosidase activity2.47E-03
57GO:0005253: anion channel activity2.47E-03
58GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.47E-03
59GO:0046556: alpha-L-arabinofuranosidase activity2.47E-03
60GO:0015204: urea transmembrane transporter activity2.47E-03
61GO:0004659: prenyltransferase activity2.47E-03
62GO:0051537: 2 iron, 2 sulfur cluster binding2.55E-03
63GO:0030570: pectate lyase activity2.71E-03
64GO:0008725: DNA-3-methyladenine glycosylase activity3.16E-03
65GO:0003959: NADPH dehydrogenase activity3.16E-03
66GO:0016208: AMP binding3.91E-03
67GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.91E-03
68GO:0016688: L-ascorbate peroxidase activity3.91E-03
69GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.91E-03
70GO:0008519: ammonium transmembrane transporter activity3.91E-03
71GO:0005247: voltage-gated chloride channel activity3.91E-03
72GO:0016762: xyloglucan:xyloglucosyl transferase activity4.60E-03
73GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.71E-03
74GO:0004849: uridine kinase activity4.71E-03
75GO:0004559: alpha-mannosidase activity4.71E-03
76GO:0016722: oxidoreductase activity, oxidizing metal ions5.92E-03
77GO:0005200: structural constituent of cytoskeleton5.92E-03
78GO:0004034: aldose 1-epimerase activity6.46E-03
79GO:0004033: aldo-keto reductase (NADP) activity6.46E-03
80GO:0016168: chlorophyll binding7.04E-03
81GO:0005509: calcium ion binding7.72E-03
82GO:0016798: hydrolase activity, acting on glycosyl bonds7.84E-03
83GO:0015112: nitrate transmembrane transporter activity9.46E-03
84GO:0003993: acid phosphatase activity1.16E-02
85GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.26E-02
86GO:0000049: tRNA binding1.29E-02
87GO:0004089: carbonate dehydratase activity1.41E-02
88GO:0031072: heat shock protein binding1.41E-02
89GO:0051287: NAD binding1.73E-02
90GO:0003690: double-stranded DNA binding2.00E-02
91GO:0015171: amino acid transmembrane transporter activity2.14E-02
92GO:0004650: polygalacturonase activity2.51E-02
93GO:0003756: protein disulfide isomerase activity2.67E-02
94GO:0004812: aminoacyl-tRNA ligase activity2.83E-02
95GO:0016746: transferase activity, transferring acyl groups2.83E-02
96GO:0016853: isomerase activity3.32E-02
97GO:0005355: glucose transmembrane transporter activity3.32E-02
98GO:0010181: FMN binding3.32E-02
99GO:0048038: quinone binding3.67E-02
100GO:0016829: lyase activity3.72E-02
101GO:0004252: serine-type endopeptidase activity3.81E-02
102GO:0030246: carbohydrate binding3.98E-02
103GO:0016491: oxidoreductase activity4.13E-02
104GO:0016791: phosphatase activity4.20E-02
105GO:0008483: transaminase activity4.39E-02
106GO:0016597: amino acid binding4.57E-02
RankGO TermAdjusted P value
1GO:0009575: chromoplast stroma0.00E+00
2GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
3GO:0044391: ribosomal subunit0.00E+00
4GO:0009507: chloroplast1.97E-60
5GO:0009570: chloroplast stroma1.69E-43
6GO:0009941: chloroplast envelope9.01E-41
7GO:0009535: chloroplast thylakoid membrane8.65E-39
8GO:0009543: chloroplast thylakoid lumen7.02E-31
9GO:0009534: chloroplast thylakoid1.47E-29
10GO:0009579: thylakoid8.35E-27
11GO:0031977: thylakoid lumen1.40E-22
12GO:0005840: ribosome3.86E-15
13GO:0030095: chloroplast photosystem II9.12E-10
14GO:0010007: magnesium chelatase complex5.06E-08
15GO:0009654: photosystem II oxygen evolving complex2.30E-07
16GO:0009505: plant-type cell wall1.10E-06
17GO:0019898: extrinsic component of membrane1.83E-06
18GO:0048046: apoplast2.86E-06
19GO:0016020: membrane3.97E-06
20GO:0009533: chloroplast stromal thylakoid8.43E-06
21GO:0009706: chloroplast inner membrane1.69E-05
22GO:0015935: small ribosomal subunit2.17E-04
23GO:0005618: cell wall2.44E-04
24GO:0042807: central vacuole3.19E-04
25GO:0009782: photosystem I antenna complex3.63E-04
26GO:0043674: columella3.63E-04
27GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex3.63E-04
28GO:0009515: granal stacked thylakoid3.63E-04
29GO:0009547: plastid ribosome3.63E-04
30GO:0009523: photosystem II5.10E-04
31GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)5.89E-04
32GO:0045298: tubulin complex5.89E-04
33GO:0000311: plastid large ribosomal subunit1.06E-03
34GO:0031969: chloroplast membrane1.44E-03
35GO:0030076: light-harvesting complex1.52E-03
36GO:0042646: plastid nucleoid1.84E-03
37GO:0005960: glycine cleavage complex1.84E-03
38GO:0009705: plant-type vacuole membrane2.24E-03
39GO:0055035: plastid thylakoid membrane3.16E-03
40GO:0034707: chloride channel complex3.91E-03
41GO:0016363: nuclear matrix4.71E-03
42GO:0009986: cell surface5.56E-03
43GO:0010319: stromule5.92E-03
44GO:0010287: plastoglobule6.57E-03
45GO:0022626: cytosolic ribosome7.23E-03
46GO:0005811: lipid particle7.41E-03
47GO:0000326: protein storage vacuole7.41E-03
48GO:0005576: extracellular region8.34E-03
49GO:0005763: mitochondrial small ribosomal subunit8.41E-03
50GO:0032040: small-subunit processome1.29E-02
51GO:0009536: plastid1.34E-02
52GO:0000312: plastid small ribosomal subunit1.53E-02
53GO:0031225: anchored component of membrane1.69E-02
54GO:0005774: vacuolar membrane1.77E-02
55GO:0042651: thylakoid membrane2.07E-02
56GO:0022625: cytosolic large ribosomal subunit2.59E-02
57GO:0009522: photosystem I3.32E-02
58GO:0009295: nucleoid4.39E-02
59GO:0005778: peroxisomal membrane4.39E-02
60GO:0030529: intracellular ribonucleoprotein complex4.76E-02
61GO:0009506: plasmodesma4.81E-02
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Gene type



Gene DE type