GO Enrichment Analysis of Co-expressed Genes with
AT1G68990
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0039694: viral RNA genome replication | 0.00E+00 |
| 2 | GO:0090069: regulation of ribosome biogenesis | 0.00E+00 |
| 3 | GO:0046686: response to cadmium ion | 3.38E-09 |
| 4 | GO:0043248: proteasome assembly | 8.37E-06 |
| 5 | GO:0080156: mitochondrial mRNA modification | 1.19E-05 |
| 6 | GO:0006102: isocitrate metabolic process | 2.21E-05 |
| 7 | GO:0006099: tricarboxylic acid cycle | 5.28E-05 |
| 8 | GO:0035266: meristem growth | 5.48E-05 |
| 9 | GO:0006177: GMP biosynthetic process | 5.48E-05 |
| 10 | GO:0007292: female gamete generation | 5.48E-05 |
| 11 | GO:1990641: response to iron ion starvation | 5.48E-05 |
| 12 | GO:2000232: regulation of rRNA processing | 5.48E-05 |
| 13 | GO:0034976: response to endoplasmic reticulum stress | 1.25E-04 |
| 14 | GO:0006101: citrate metabolic process | 1.34E-04 |
| 15 | GO:0008535: respiratory chain complex IV assembly | 1.34E-04 |
| 16 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.34E-04 |
| 17 | GO:0051788: response to misfolded protein | 1.34E-04 |
| 18 | GO:1902626: assembly of large subunit precursor of preribosome | 2.28E-04 |
| 19 | GO:0042256: mature ribosome assembly | 2.28E-04 |
| 20 | GO:0045039: protein import into mitochondrial inner membrane | 2.28E-04 |
| 21 | GO:0060968: regulation of gene silencing | 2.28E-04 |
| 22 | GO:0042823: pyridoxal phosphate biosynthetic process | 3.33E-04 |
| 23 | GO:0006413: translational initiation | 3.53E-04 |
| 24 | GO:0033356: UDP-L-arabinose metabolic process | 4.45E-04 |
| 25 | GO:0051205: protein insertion into membrane | 4.45E-04 |
| 26 | GO:0000460: maturation of 5.8S rRNA | 4.45E-04 |
| 27 | GO:0009651: response to salt stress | 5.14E-04 |
| 28 | GO:0009697: salicylic acid biosynthetic process | 5.66E-04 |
| 29 | GO:0006097: glyoxylate cycle | 5.66E-04 |
| 30 | GO:0006461: protein complex assembly | 5.66E-04 |
| 31 | GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly | 6.92E-04 |
| 32 | GO:0048827: phyllome development | 6.92E-04 |
| 33 | GO:0048232: male gamete generation | 6.92E-04 |
| 34 | GO:0000470: maturation of LSU-rRNA | 6.92E-04 |
| 35 | GO:0016554: cytidine to uridine editing | 6.92E-04 |
| 36 | GO:0009612: response to mechanical stimulus | 8.25E-04 |
| 37 | GO:1901001: negative regulation of response to salt stress | 8.25E-04 |
| 38 | GO:0000054: ribosomal subunit export from nucleus | 8.25E-04 |
| 39 | GO:0045087: innate immune response | 8.40E-04 |
| 40 | GO:0042773: ATP synthesis coupled electron transport | 9.62E-04 |
| 41 | GO:0045454: cell redox homeostasis | 1.09E-03 |
| 42 | GO:0010078: maintenance of root meristem identity | 1.11E-03 |
| 43 | GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline | 1.11E-03 |
| 44 | GO:0006875: cellular metal ion homeostasis | 1.11E-03 |
| 45 | GO:0006855: drug transmembrane transport | 1.24E-03 |
| 46 | GO:0043067: regulation of programmed cell death | 1.58E-03 |
| 47 | GO:0048829: root cap development | 1.75E-03 |
| 48 | GO:0010015: root morphogenesis | 1.93E-03 |
| 49 | GO:0009933: meristem structural organization | 2.49E-03 |
| 50 | GO:0090351: seedling development | 2.70E-03 |
| 51 | GO:0010053: root epidermal cell differentiation | 2.70E-03 |
| 52 | GO:0006487: protein N-linked glycosylation | 3.11E-03 |
| 53 | GO:0007010: cytoskeleton organization | 3.11E-03 |
| 54 | GO:0030433: ubiquitin-dependent ERAD pathway | 3.77E-03 |
| 55 | GO:0031348: negative regulation of defense response | 3.77E-03 |
| 56 | GO:0071215: cellular response to abscisic acid stimulus | 4.00E-03 |
| 57 | GO:0006457: protein folding | 4.04E-03 |
| 58 | GO:0006412: translation | 4.63E-03 |
| 59 | GO:0008033: tRNA processing | 4.71E-03 |
| 60 | GO:0010501: RNA secondary structure unwinding | 4.71E-03 |
| 61 | GO:0048868: pollen tube development | 4.96E-03 |
| 62 | GO:0030163: protein catabolic process | 6.27E-03 |
| 63 | GO:0009567: double fertilization forming a zygote and endosperm | 6.55E-03 |
| 64 | GO:0009615: response to virus | 7.40E-03 |
| 65 | GO:0030244: cellulose biosynthetic process | 8.91E-03 |
| 66 | GO:0009832: plant-type cell wall biogenesis | 9.22E-03 |
| 67 | GO:0048767: root hair elongation | 9.22E-03 |
| 68 | GO:0010311: lateral root formation | 9.22E-03 |
| 69 | GO:0006499: N-terminal protein myristoylation | 9.54E-03 |
| 70 | GO:0009408: response to heat | 9.65E-03 |
| 71 | GO:0010043: response to zinc ion | 9.86E-03 |
| 72 | GO:0048364: root development | 1.01E-02 |
| 73 | GO:0009409: response to cold | 1.05E-02 |
| 74 | GO:0009853: photorespiration | 1.05E-02 |
| 75 | GO:0009926: auxin polar transport | 1.26E-02 |
| 76 | GO:0000154: rRNA modification | 1.37E-02 |
| 77 | GO:0009965: leaf morphogenesis | 1.37E-02 |
| 78 | GO:0006486: protein glycosylation | 1.55E-02 |
| 79 | GO:0006417: regulation of translation | 1.67E-02 |
| 80 | GO:0006096: glycolytic process | 1.75E-02 |
| 81 | GO:0048367: shoot system development | 1.79E-02 |
| 82 | GO:0048316: seed development | 1.79E-02 |
| 83 | GO:0009553: embryo sac development | 1.95E-02 |
| 84 | GO:0009624: response to nematode | 1.99E-02 |
| 85 | GO:0009793: embryo development ending in seed dormancy | 2.06E-02 |
| 86 | GO:0000398: mRNA splicing, via spliceosome | 2.21E-02 |
| 87 | GO:0006511: ubiquitin-dependent protein catabolic process | 2.34E-02 |
| 88 | GO:0009845: seed germination | 2.47E-02 |
| 89 | GO:0009790: embryo development | 2.61E-02 |
| 90 | GO:0009451: RNA modification | 2.99E-02 |
| 91 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 3.19E-02 |
| 92 | GO:0008380: RNA splicing | 3.34E-02 |
| 93 | GO:0006979: response to oxidative stress | 3.51E-02 |
| 94 | GO:0009733: response to auxin | 3.90E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0050220: prostaglandin-E synthase activity | 0.00E+00 |
| 2 | GO:0051539: 4 iron, 4 sulfur cluster binding | 6.02E-05 |
| 3 | GO:0015036: disulfide oxidoreductase activity | 1.34E-04 |
| 4 | GO:0004776: succinate-CoA ligase (GDP-forming) activity | 1.34E-04 |
| 5 | GO:0003938: IMP dehydrogenase activity | 1.34E-04 |
| 6 | GO:0003994: aconitate hydratase activity | 1.34E-04 |
| 7 | GO:0004775: succinate-CoA ligase (ADP-forming) activity | 1.34E-04 |
| 8 | GO:0048531: beta-1,3-galactosyltransferase activity | 1.34E-04 |
| 9 | GO:0003756: protein disulfide isomerase activity | 2.29E-04 |
| 10 | GO:0010181: FMN binding | 3.14E-04 |
| 11 | GO:0043023: ribosomal large subunit binding | 3.33E-04 |
| 12 | GO:0004449: isocitrate dehydrogenase (NAD+) activity | 3.33E-04 |
| 13 | GO:0003743: translation initiation factor activity | 4.73E-04 |
| 14 | GO:0005496: steroid binding | 5.66E-04 |
| 15 | GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity | 5.66E-04 |
| 16 | GO:0036402: proteasome-activating ATPase activity | 6.92E-04 |
| 17 | GO:0015238: drug transmembrane transporter activity | 7.02E-04 |
| 18 | GO:0005515: protein binding | 7.18E-04 |
| 19 | GO:0005507: copper ion binding | 8.16E-04 |
| 20 | GO:0004656: procollagen-proline 4-dioxygenase activity | 8.25E-04 |
| 21 | GO:0003697: single-stranded DNA binding | 8.40E-04 |
| 22 | GO:0030515: snoRNA binding | 9.62E-04 |
| 23 | GO:0043022: ribosome binding | 1.11E-03 |
| 24 | GO:0008135: translation factor activity, RNA binding | 1.26E-03 |
| 25 | GO:0030955: potassium ion binding | 1.58E-03 |
| 26 | GO:0004743: pyruvate kinase activity | 1.58E-03 |
| 27 | GO:0001054: RNA polymerase I activity | 1.93E-03 |
| 28 | GO:0003729: mRNA binding | 2.52E-03 |
| 29 | GO:0017025: TBP-class protein binding | 2.70E-03 |
| 30 | GO:0000166: nucleotide binding | 2.91E-03 |
| 31 | GO:0051536: iron-sulfur cluster binding | 3.11E-03 |
| 32 | GO:0031418: L-ascorbic acid binding | 3.11E-03 |
| 33 | GO:0003954: NADH dehydrogenase activity | 3.11E-03 |
| 34 | GO:0015297: antiporter activity | 3.27E-03 |
| 35 | GO:0005524: ATP binding | 4.30E-03 |
| 36 | GO:0003713: transcription coactivator activity | 4.96E-03 |
| 37 | GO:0016853: isomerase activity | 5.22E-03 |
| 38 | GO:0008137: NADH dehydrogenase (ubiquinone) activity | 5.74E-03 |
| 39 | GO:0005200: structural constituent of cytoskeleton | 6.83E-03 |
| 40 | GO:0004004: ATP-dependent RNA helicase activity | 8.29E-03 |
| 41 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 8.91E-03 |
| 42 | GO:0003723: RNA binding | 9.36E-03 |
| 43 | GO:0050897: cobalt ion binding | 9.86E-03 |
| 44 | GO:0016491: oxidoreductase activity | 1.01E-02 |
| 45 | GO:0009055: electron carrier activity | 1.04E-02 |
| 46 | GO:0003746: translation elongation factor activity | 1.05E-02 |
| 47 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 1.05E-02 |
| 48 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.33E-02 |
| 49 | GO:0043621: protein self-association | 1.33E-02 |
| 50 | GO:0005198: structural molecule activity | 1.37E-02 |
| 51 | GO:0016887: ATPase activity | 1.50E-02 |
| 52 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.55E-02 |
| 53 | GO:0003735: structural constituent of ribosome | 1.71E-02 |
| 54 | GO:0051082: unfolded protein binding | 1.99E-02 |
| 55 | GO:0015035: protein disulfide oxidoreductase activity | 2.04E-02 |
| 56 | GO:0008026: ATP-dependent helicase activity | 2.08E-02 |
| 57 | GO:0016740: transferase activity | 2.10E-02 |
| 58 | GO:0004386: helicase activity | 2.12E-02 |
| 59 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 2.38E-02 |
| 60 | GO:0016829: lyase activity | 2.47E-02 |
| 61 | GO:0005525: GTP binding | 2.83E-02 |
| 62 | GO:0005509: calcium ion binding | 3.21E-02 |
| 63 | GO:0005215: transporter activity | 3.85E-02 |
| 64 | GO:0000287: magnesium ion binding | 3.96E-02 |
| 65 | GO:0046982: protein heterodimerization activity | 3.96E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0019034: viral replication complex | 0.00E+00 |
| 2 | GO:0000327: lytic vacuole within protein storage vacuole | 0.00E+00 |
| 3 | GO:0005739: mitochondrion | 1.23E-07 |
| 4 | GO:0005829: cytosol | 1.31E-05 |
| 5 | GO:0005730: nucleolus | 1.15E-04 |
| 6 | GO:0070545: PeBoW complex | 1.34E-04 |
| 7 | GO:0031314: extrinsic component of mitochondrial inner membrane | 1.34E-04 |
| 8 | GO:0005783: endoplasmic reticulum | 1.41E-04 |
| 9 | GO:0005774: vacuolar membrane | 5.47E-04 |
| 10 | GO:0008250: oligosaccharyltransferase complex | 5.66E-04 |
| 11 | GO:0031428: box C/D snoRNP complex | 6.92E-04 |
| 12 | GO:0009506: plasmodesma | 7.39E-04 |
| 13 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 7.53E-04 |
| 14 | GO:0031597: cytosolic proteasome complex | 8.25E-04 |
| 15 | GO:0005762: mitochondrial large ribosomal subunit | 8.25E-04 |
| 16 | GO:0031595: nuclear proteasome complex | 9.62E-04 |
| 17 | GO:0030687: preribosome, large subunit precursor | 9.62E-04 |
| 18 | GO:0000326: protein storage vacuole | 1.26E-03 |
| 19 | GO:0005743: mitochondrial inner membrane | 1.29E-03 |
| 20 | GO:0005736: DNA-directed RNA polymerase I complex | 1.41E-03 |
| 21 | GO:0000502: proteasome complex | 1.42E-03 |
| 22 | GO:0008540: proteasome regulatory particle, base subcomplex | 1.58E-03 |
| 23 | GO:0005852: eukaryotic translation initiation factor 3 complex | 1.93E-03 |
| 24 | GO:0008541: proteasome regulatory particle, lid subcomplex | 1.93E-03 |
| 25 | GO:0032040: small-subunit processome | 2.11E-03 |
| 26 | GO:0043234: protein complex | 2.90E-03 |
| 27 | GO:0045271: respiratory chain complex I | 3.32E-03 |
| 28 | GO:0005794: Golgi apparatus | 4.67E-03 |
| 29 | GO:0005788: endoplasmic reticulum lumen | 7.69E-03 |
| 30 | GO:0009505: plant-type cell wall | 9.48E-03 |
| 31 | GO:0015934: large ribosomal subunit | 9.86E-03 |
| 32 | GO:0005618: cell wall | 1.11E-02 |
| 33 | GO:0005789: endoplasmic reticulum membrane | 1.22E-02 |
| 34 | GO:0005856: cytoskeleton | 1.37E-02 |
| 35 | GO:0031966: mitochondrial membrane | 1.48E-02 |
| 36 | GO:0005681: spliceosomal complex | 1.75E-02 |
| 37 | GO:0005747: mitochondrial respiratory chain complex I | 1.79E-02 |
| 38 | GO:0016607: nuclear speck | 1.79E-02 |
| 39 | GO:0005834: heterotrimeric G-protein complex | 1.83E-02 |
| 40 | GO:0005654: nucleoplasm | 2.29E-02 |
| 41 | GO:0005759: mitochondrial matrix | 2.75E-02 |
| 42 | GO:0046658: anchored component of plasma membrane | 3.59E-02 |
| 43 | GO:0031969: chloroplast membrane | 4.68E-02 |