Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G68190

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090706: specification of plant organ position0.00E+00
2GO:1901918: negative regulation of exoribonuclease activity0.00E+00
3GO:0016553: base conversion or substitution editing0.00E+00
4GO:0033494: ferulate metabolic process0.00E+00
5GO:2000121: regulation of removal of superoxide radicals0.00E+00
6GO:0061635: regulation of protein complex stability0.00E+00
7GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
8GO:0005996: monosaccharide metabolic process0.00E+00
9GO:0019284: L-methionine salvage from S-adenosylmethionine0.00E+00
10GO:2000505: regulation of energy homeostasis0.00E+00
11GO:0015979: photosynthesis1.30E-15
12GO:0009773: photosynthetic electron transport in photosystem I4.95E-13
13GO:0015995: chlorophyll biosynthetic process3.18E-07
14GO:0009735: response to cytokinin5.93E-07
15GO:0032544: plastid translation2.00E-06
16GO:0006412: translation3.41E-06
17GO:0015976: carbon utilization3.50E-06
18GO:0006094: gluconeogenesis1.73E-05
19GO:0034755: iron ion transmembrane transport1.86E-05
20GO:0030388: fructose 1,6-bisphosphate metabolic process1.86E-05
21GO:0006000: fructose metabolic process6.10E-05
22GO:0010206: photosystem II repair1.00E-04
23GO:0080170: hydrogen peroxide transmembrane transport1.27E-04
24GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.27E-04
25GO:2000122: negative regulation of stomatal complex development2.17E-04
26GO:0045727: positive regulation of translation2.17E-04
27GO:0006546: glycine catabolic process2.17E-04
28GO:0010037: response to carbon dioxide2.17E-04
29GO:0010207: photosystem II assembly3.51E-04
30GO:0019253: reductive pentose-phosphate cycle3.51E-04
31GO:0042254: ribosome biogenesis3.52E-04
32GO:0009409: response to cold3.98E-04
33GO:0042549: photosystem II stabilization4.56E-04
34GO:0006810: transport5.21E-04
35GO:0010019: chloroplast-nucleus signaling pathway6.04E-04
36GO:0009768: photosynthesis, light harvesting in photosystem I6.18E-04
37GO:0043489: RNA stabilization6.58E-04
38GO:0043266: regulation of potassium ion transport6.58E-04
39GO:0071370: cellular response to gibberellin stimulus6.58E-04
40GO:0006824: cobalt ion transport6.58E-04
41GO:0000481: maturation of 5S rRNA6.58E-04
42GO:0071461: cellular response to redox state6.58E-04
43GO:2000021: regulation of ion homeostasis6.58E-04
44GO:0034337: RNA folding6.58E-04
45GO:0010450: inflorescence meristem growth6.58E-04
46GO:0071588: hydrogen peroxide mediated signaling pathway6.58E-04
47GO:0010729: positive regulation of hydrogen peroxide biosynthetic process6.58E-04
48GO:0018298: protein-chromophore linkage6.67E-04
49GO:0010196: nonphotochemical quenching7.71E-04
50GO:0009657: plastid organization1.16E-03
51GO:0006002: fructose 6-phosphate metabolic process1.16E-03
52GO:0034220: ion transmembrane transport1.19E-03
53GO:0080005: photosystem stoichiometry adjustment1.42E-03
54GO:1900871: chloroplast mRNA modification1.42E-03
55GO:0010541: acropetal auxin transport1.42E-03
56GO:0005975: carbohydrate metabolic process1.48E-03
57GO:0009644: response to high light intensity1.59E-03
58GO:0010205: photoinhibition1.65E-03
59GO:0009638: phototropism1.65E-03
60GO:0007623: circadian rhythm2.24E-03
61GO:0018119: peptidyl-cysteine S-nitrosylation2.24E-03
62GO:0006518: peptide metabolic process2.34E-03
63GO:0006013: mannose metabolic process2.34E-03
64GO:0010160: formation of animal organ boundary2.34E-03
65GO:0045493: xylan catabolic process2.34E-03
66GO:2001295: malonyl-CoA biosynthetic process2.34E-03
67GO:0045165: cell fate commitment2.34E-03
68GO:0009718: anthocyanin-containing compound biosynthetic process2.92E-03
69GO:0005986: sucrose biosynthetic process2.92E-03
70GO:0042742: defense response to bacterium3.17E-03
71GO:0042128: nitrate assimilation3.17E-03
72GO:0010143: cutin biosynthetic process3.30E-03
73GO:0009226: nucleotide-sugar biosynthetic process3.40E-03
74GO:0043481: anthocyanin accumulation in tissues in response to UV light3.40E-03
75GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity3.40E-03
76GO:1901332: negative regulation of lateral root development3.40E-03
77GO:2001141: regulation of RNA biosynthetic process3.40E-03
78GO:0046836: glycolipid transport3.40E-03
79GO:1902476: chloride transmembrane transport3.40E-03
80GO:0051513: regulation of monopolar cell growth3.40E-03
81GO:0071484: cellular response to light intensity3.40E-03
82GO:0009152: purine ribonucleotide biosynthetic process3.40E-03
83GO:0046653: tetrahydrofolate metabolic process3.40E-03
84GO:0005985: sucrose metabolic process3.70E-03
85GO:0006636: unsaturated fatty acid biosynthetic process4.13E-03
86GO:0006833: water transport4.13E-03
87GO:0010218: response to far red light4.40E-03
88GO:0019464: glycine decarboxylation via glycine cleavage system4.58E-03
89GO:0030104: water homeostasis4.58E-03
90GO:0015994: chlorophyll metabolic process4.58E-03
91GO:0010023: proanthocyanidin biosynthetic process4.58E-03
92GO:0010158: abaxial cell fate specification5.89E-03
93GO:0034052: positive regulation of plant-type hypersensitive response5.89E-03
94GO:0010117: photoprotection5.89E-03
95GO:0006461: protein complex assembly5.89E-03
96GO:1902183: regulation of shoot apical meristem development5.89E-03
97GO:0010114: response to red light7.28E-03
98GO:0060918: auxin transport7.31E-03
99GO:1902456: regulation of stomatal opening7.31E-03
100GO:0032973: amino acid export7.31E-03
101GO:0000741: karyogamy7.31E-03
102GO:0042631: cellular response to water deprivation8.53E-03
103GO:0000413: protein peptidyl-prolyl isomerization8.53E-03
104GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)8.84E-03
105GO:0019509: L-methionine salvage from methylthioadenosine8.84E-03
106GO:0045490: pectin catabolic process8.88E-03
107GO:0009958: positive gravitropism9.20E-03
108GO:1900056: negative regulation of leaf senescence1.05E-02
109GO:0006821: chloride transport1.05E-02
110GO:0009645: response to low light intensity stimulus1.05E-02
111GO:0050829: defense response to Gram-negative bacterium1.05E-02
112GO:0009772: photosynthetic electron transport in photosystem II1.05E-02
113GO:0043090: amino acid import1.05E-02
114GO:0000302: response to reactive oxygen species1.14E-02
115GO:0010439: regulation of glucosinolate biosynthetic process1.22E-02
116GO:0009819: drought recovery1.22E-02
117GO:0009850: auxin metabolic process1.22E-02
118GO:0043068: positive regulation of programmed cell death1.22E-02
119GO:0032508: DNA duplex unwinding1.22E-02
120GO:0046620: regulation of organ growth1.22E-02
121GO:0010492: maintenance of shoot apical meristem identity1.22E-02
122GO:0048564: photosystem I assembly1.22E-02
123GO:0006096: glycolytic process1.32E-02
124GO:0010093: specification of floral organ identity1.41E-02
125GO:0009932: cell tip growth1.41E-02
126GO:0071482: cellular response to light stimulus1.41E-02
127GO:0009051: pentose-phosphate shunt, oxidative branch1.60E-02
128GO:0009821: alkaloid biosynthetic process1.60E-02
129GO:0090305: nucleic acid phosphodiester bond hydrolysis1.60E-02
130GO:0080144: amino acid homeostasis1.60E-02
131GO:0006098: pentose-phosphate shunt1.60E-02
132GO:2000024: regulation of leaf development1.60E-02
133GO:0048507: meristem development1.60E-02
134GO:0008152: metabolic process1.65E-02
135GO:0010027: thylakoid membrane organization1.66E-02
136GO:0009658: chloroplast organization1.72E-02
137GO:0009299: mRNA transcription2.01E-02
138GO:0009870: defense response signaling pathway, resistance gene-dependent2.01E-02
139GO:0048829: root cap development2.01E-02
140GO:0006949: syncytium formation2.01E-02
141GO:0009723: response to ethylene2.14E-02
142GO:0009817: defense response to fungus, incompatible interaction2.17E-02
143GO:0019684: photosynthesis, light reaction2.23E-02
144GO:0009698: phenylpropanoid metabolic process2.23E-02
145GO:0009089: lysine biosynthetic process via diaminopimelate2.23E-02
146GO:0043085: positive regulation of catalytic activity2.23E-02
147GO:0006879: cellular iron ion homeostasis2.23E-02
148GO:0006352: DNA-templated transcription, initiation2.23E-02
149GO:0000272: polysaccharide catabolic process2.23E-02
150GO:0009750: response to fructose2.23E-02
151GO:0010015: root morphogenesis2.23E-02
152GO:0080167: response to karrikin2.37E-02
153GO:0015706: nitrate transport2.46E-02
154GO:0016024: CDP-diacylglycerol biosynthetic process2.46E-02
155GO:0008361: regulation of cell size2.46E-02
156GO:0009734: auxin-activated signaling pathway2.50E-02
157GO:0010119: regulation of stomatal movement2.51E-02
158GO:0009631: cold acclimation2.51E-02
159GO:0010628: positive regulation of gene expression2.69E-02
160GO:0006006: glucose metabolic process2.69E-02
161GO:0018107: peptidyl-threonine phosphorylation2.69E-02
162GO:0009725: response to hormone2.69E-02
163GO:0009767: photosynthetic electron transport chain2.69E-02
164GO:0009637: response to blue light2.75E-02
165GO:0034599: cellular response to oxidative stress2.88E-02
166GO:0009933: meristem structural organization2.93E-02
167GO:0010540: basipetal auxin transport2.93E-02
168GO:0006633: fatty acid biosynthetic process2.97E-02
169GO:0045454: cell redox homeostasis3.10E-02
170GO:0010167: response to nitrate3.18E-02
171GO:0010030: positive regulation of seed germination3.18E-02
172GO:0010053: root epidermal cell differentiation3.18E-02
173GO:0009926: auxin polar transport3.55E-02
174GO:0009944: polarity specification of adaxial/abaxial axis3.70E-02
175GO:0000027: ribosomal large subunit assembly3.70E-02
176GO:0005992: trehalose biosynthetic process3.70E-02
177GO:0009611: response to wounding3.81E-02
178GO:0006418: tRNA aminoacylation for protein translation3.97E-02
179GO:0061077: chaperone-mediated protein folding4.25E-02
180GO:0003333: amino acid transmembrane transport4.25E-02
181GO:0048511: rhythmic process4.25E-02
182GO:0009664: plant-type cell wall organization4.44E-02
183GO:0009814: defense response, incompatible interaction4.53E-02
184GO:0010017: red or far-red light signaling pathway4.53E-02
185GO:0009753: response to jasmonic acid4.64E-02
186GO:0006364: rRNA processing4.76E-02
187GO:0009585: red, far-red light phototransduction4.76E-02
188GO:0009831: plant-type cell wall modification involved in multidimensional cell growth4.81E-02
189GO:0006012: galactose metabolic process4.81E-02
RankGO TermAdjusted P value
1GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
2GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
3GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
4GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity0.00E+00
5GO:0046570: methylthioribulose 1-phosphate dehydratase activity0.00E+00
6GO:0043874: acireductone synthase activity0.00E+00
7GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
8GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
9GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
10GO:0004822: isoleucine-tRNA ligase activity0.00E+00
11GO:0033947: mannosylglycoprotein endo-beta-mannosidase activity0.00E+00
12GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
13GO:0019843: rRNA binding6.85E-16
14GO:0003755: peptidyl-prolyl cis-trans isomerase activity8.98E-10
15GO:0005528: FK506 binding1.14E-09
16GO:0003735: structural constituent of ribosome6.11E-09
17GO:0016851: magnesium chelatase activity1.24E-06
18GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity1.86E-05
19GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.17E-04
20GO:0004089: carbonate dehydratase activity2.97E-04
21GO:0008266: poly(U) RNA binding3.51E-04
22GO:0004130: cytochrome-c peroxidase activity4.56E-04
23GO:0042578: phosphoric ester hydrolase activity4.56E-04
24GO:0004332: fructose-bisphosphate aldolase activity4.56E-04
25GO:0031409: pigment binding4.74E-04
26GO:0016168: chlorophyll binding4.81E-04
27GO:0004017: adenylate kinase activity6.04E-04
28GO:0051920: peroxiredoxin activity6.04E-04
29GO:0004856: xylulokinase activity6.58E-04
30GO:0052638: indole-3-butyrate beta-glucosyltransferase activity6.58E-04
31GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity6.58E-04
32GO:0009671: nitrate:proton symporter activity6.58E-04
33GO:0045485: omega-6 fatty acid desaturase activity6.58E-04
34GO:0046906: tetrapyrrole binding6.58E-04
35GO:0016209: antioxidant activity9.57E-04
36GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity1.42E-03
37GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.42E-03
38GO:0008967: phosphoglycolate phosphatase activity1.42E-03
39GO:0047746: chlorophyllase activity1.42E-03
40GO:0042389: omega-3 fatty acid desaturase activity1.42E-03
41GO:0016868: intramolecular transferase activity, phosphotransferases1.42E-03
42GO:0004618: phosphoglycerate kinase activity1.42E-03
43GO:0010297: heteropolysaccharide binding1.42E-03
44GO:0005094: Rho GDP-dissociation inhibitor activity1.42E-03
45GO:0043425: bHLH transcription factor binding1.42E-03
46GO:0004047: aminomethyltransferase activity1.42E-03
47GO:0051537: 2 iron, 2 sulfur cluster binding1.59E-03
48GO:0005381: iron ion transmembrane transporter activity1.65E-03
49GO:0010277: chlorophyllide a oxygenase [overall] activity2.34E-03
50GO:0050734: hydroxycinnamoyltransferase activity2.34E-03
51GO:0002161: aminoacyl-tRNA editing activity2.34E-03
52GO:0004075: biotin carboxylase activity2.34E-03
53GO:0030267: glyoxylate reductase (NADP) activity2.34E-03
54GO:0016742: hydroxymethyl-, formyl- and related transferase activity2.34E-03
55GO:0008864: formyltetrahydrofolate deformylase activity2.34E-03
56GO:0015250: water channel activity2.75E-03
57GO:0004375: glycine dehydrogenase (decarboxylating) activity3.40E-03
58GO:0019201: nucleotide kinase activity3.40E-03
59GO:0017089: glycolipid transporter activity3.40E-03
60GO:0016787: hydrolase activity4.07E-03
61GO:0004045: aminoacyl-tRNA hydrolase activity4.58E-03
62GO:0016987: sigma factor activity4.58E-03
63GO:0010328: auxin influx transmembrane transporter activity4.58E-03
64GO:1990137: plant seed peroxidase activity4.58E-03
65GO:0009044: xylan 1,4-beta-xylosidase activity4.58E-03
66GO:0005253: anion channel activity4.58E-03
67GO:0046556: alpha-L-arabinofuranosidase activity4.58E-03
68GO:0001053: plastid sigma factor activity4.58E-03
69GO:0004345: glucose-6-phosphate dehydrogenase activity4.58E-03
70GO:0051861: glycolipid binding4.58E-03
71GO:0016788: hydrolase activity, acting on ester bonds5.01E-03
72GO:0016773: phosphotransferase activity, alcohol group as acceptor5.89E-03
73GO:0003989: acetyl-CoA carboxylase activity5.89E-03
74GO:0008725: DNA-3-methyladenine glycosylase activity5.89E-03
75GO:0030570: pectate lyase activity6.67E-03
76GO:0005509: calcium ion binding6.86E-03
77GO:0016688: L-ascorbate peroxidase activity7.31E-03
78GO:0004366: glycerol-3-phosphate O-acyltransferase activity7.31E-03
79GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity7.31E-03
80GO:0005247: voltage-gated chloride channel activity7.31E-03
81GO:0015293: symporter activity8.46E-03
82GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity8.84E-03
83GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity8.84E-03
84GO:0004602: glutathione peroxidase activity8.84E-03
85GO:0004559: alpha-mannosidase activity8.84E-03
86GO:0050662: coenzyme binding9.91E-03
87GO:0019899: enzyme binding1.05E-02
88GO:0048038: quinone binding1.14E-02
89GO:0004034: aldose 1-epimerase activity1.22E-02
90GO:0004869: cysteine-type endopeptidase inhibitor activity1.22E-02
91GO:0004564: beta-fructofuranosidase activity1.22E-02
92GO:0016791: phosphatase activity1.39E-02
93GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water1.41E-02
94GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity1.60E-02
95GO:0004575: sucrose alpha-glucosidase activity1.80E-02
96GO:0016844: strictosidine synthase activity1.80E-02
97GO:0015112: nitrate transmembrane transporter activity1.80E-02
98GO:0004805: trehalose-phosphatase activity2.01E-02
99GO:0008236: serine-type peptidase activity2.06E-02
100GO:0005096: GTPase activator activity2.28E-02
101GO:0016829: lyase activity2.46E-02
102GO:0000049: tRNA binding2.46E-02
103GO:0008378: galactosyltransferase activity2.46E-02
104GO:0005215: transporter activity2.57E-02
105GO:0004565: beta-galactosidase activity2.69E-02
106GO:0004022: alcohol dehydrogenase (NAD) activity2.69E-02
107GO:0010329: auxin efflux transmembrane transporter activity2.69E-02
108GO:0031072: heat shock protein binding2.69E-02
109GO:0008146: sulfotransferase activity3.18E-02
110GO:0005515: protein binding3.27E-02
111GO:0004185: serine-type carboxypeptidase activity3.55E-02
112GO:0015079: potassium ion transmembrane transporter activity3.97E-02
113GO:0004707: MAP kinase activity4.25E-02
114GO:0004176: ATP-dependent peptidase activity4.25E-02
115GO:0022891: substrate-specific transmembrane transporter activity4.81E-02
RankGO TermAdjusted P value
1GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
2GO:0098572: stromal side of plastid thylakoid membrane0.00E+00
3GO:0009507: chloroplast9.94E-65
4GO:0009535: chloroplast thylakoid membrane8.40E-50
5GO:0009534: chloroplast thylakoid1.62E-42
6GO:0009570: chloroplast stroma4.13E-40
7GO:0009941: chloroplast envelope2.26E-36
8GO:0009543: chloroplast thylakoid lumen1.13E-29
9GO:0009579: thylakoid1.54E-21
10GO:0031977: thylakoid lumen1.10E-14
11GO:0030095: chloroplast photosystem II3.85E-12
12GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)6.08E-10
13GO:0009654: photosystem II oxygen evolving complex7.45E-08
14GO:0010007: magnesium chelatase complex2.62E-07
15GO:0005840: ribosome3.60E-07
16GO:0009533: chloroplast stromal thylakoid6.76E-07
17GO:0019898: extrinsic component of membrane8.84E-07
18GO:0010287: plastoglobule4.23E-06
19GO:0009523: photosystem II1.77E-05
20GO:0010319: stromule3.86E-05
21GO:0048046: apoplast4.38E-05
22GO:0016020: membrane6.31E-05
23GO:0009706: chloroplast inner membrane1.66E-04
24GO:0000311: plastid large ribosomal subunit2.48E-04
25GO:0009505: plant-type cell wall3.06E-04
26GO:0000312: plastid small ribosomal subunit3.51E-04
27GO:0042651: thylakoid membrane6.18E-04
28GO:0009782: photosystem I antenna complex6.58E-04
29GO:0043674: columella6.58E-04
30GO:0009783: photosystem II antenna complex6.58E-04
31GO:0009344: nitrite reductase complex [NAD(P)H]6.58E-04
32GO:0009547: plastid ribosome6.58E-04
33GO:0009538: photosystem I reaction center9.57E-04
34GO:0042170: plastid membrane1.42E-03
35GO:0000427: plastid-encoded plastid RNA polymerase complex1.42E-03
36GO:0009522: photosystem I1.43E-03
37GO:0005960: glycine cleavage complex3.40E-03
38GO:0009531: secondary cell wall3.40E-03
39GO:0005775: vacuolar lumen3.40E-03
40GO:0030076: light-harvesting complex3.70E-03
41GO:0005618: cell wall5.22E-03
42GO:0031969: chloroplast membrane7.07E-03
43GO:0034707: chloride channel complex7.31E-03
44GO:0042807: central vacuole1.05E-02
45GO:0005811: lipid particle1.41E-02
46GO:0009295: nucleoid1.47E-02
47GO:0008180: COP9 signalosome1.60E-02
48GO:0042644: chloroplast nucleoid1.60E-02
49GO:0005763: mitochondrial small ribosomal subunit1.60E-02
50GO:0030529: intracellular ribonucleoprotein complex1.66E-02
51GO:0032040: small-subunit processome2.46E-02
52GO:0015934: large ribosomal subunit2.51E-02
53GO:0005773: vacuole2.57E-02
54GO:0009508: plastid chromosome2.69E-02
55GO:0009705: plant-type vacuole membrane3.34E-02
56GO:0015935: small ribosomal subunit4.25E-02
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Gene type



Gene DE type