co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G67050

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000121: regulation of removal of superoxide radicals	0.00E+00
2	GO:0005996: monosaccharide metabolic process	0.00E+00
3	GO:0015979: photosynthesis	6.46E-24
4	GO:0009768: photosynthesis, light harvesting in photosystem I	1.09E-07
5	GO:0042742: defense response to bacterium	1.90E-06
6	GO:0009773: photosynthetic electron transport in photosystem I	1.96E-06
7	GO:0018298: protein-chromophore linkage	3.00E-06
8	GO:0010207: photosystem II assembly	4.00E-06
9	GO:0009735: response to cytokinin	2.04E-05
10	GO:0010196: nonphotochemical quenching	3.54E-05
11	GO:0009769: photosynthesis, light harvesting in photosystem II	3.54E-05
12	GO:0010206: photosystem II repair	7.31E-05
13	GO:0006106: fumarate metabolic process	8.78E-05
14	GO:1902458: positive regulation of stomatal opening	8.78E-05
15	GO:0071588: hydrogen peroxide mediated signaling pathway	8.78E-05
16	GO:0018119: peptidyl-cysteine S-nitrosylation	1.25E-04
17	GO:0019253: reductive pentose-phosphate cycle	1.91E-04
18	GO:1903426: regulation of reactive oxygen species biosynthetic process	2.08E-04
19	GO:0030388: fructose 1,6-bisphosphate metabolic process	2.08E-04
20	GO:0009409: response to cold	2.94E-04
21	GO:0006000: fructose metabolic process	3.48E-04
22	GO:0090391: granum assembly	3.48E-04
23	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	5.01E-04
24	GO:0055070: copper ion homeostasis	5.01E-04
25	GO:0051513: regulation of monopolar cell growth	5.01E-04
26	GO:0071484: cellular response to light intensity	5.01E-04
27	GO:0045727: positive regulation of translation	6.66E-04
28	GO:2000122: negative regulation of stomatal complex development	6.66E-04
29	GO:0010037: response to carbon dioxide	6.66E-04
30	GO:0010109: regulation of photosynthesis	6.66E-04
31	GO:0015976: carbon utilization	6.66E-04
32	GO:0009765: photosynthesis, light harvesting	6.66E-04
33	GO:0034052: positive regulation of plant-type hypersensitive response	8.44E-04
34	GO:0032543: mitochondrial translation	8.44E-04
35	GO:0045038: protein import into chloroplast thylakoid membrane	8.44E-04
36	GO:0031365: N-terminal protein amino acid modification	8.44E-04
37	GO:0010027: thylakoid membrane organization	9.37E-04
38	GO:0009635: response to herbicide	1.03E-03
39	GO:0042549: photosystem II stabilization	1.03E-03
40	GO:0015995: chlorophyll biosynthetic process	1.09E-03
41	GO:0009817: defense response to fungus, incompatible interaction	1.21E-03
42	GO:0017148: negative regulation of translation	1.23E-03
43	GO:0010189: vitamin E biosynthetic process	1.23E-03
44	GO:0010019: chloroplast-nucleus signaling pathway	1.23E-03
45	GO:0010218: response to far red light	1.32E-03
46	GO:0009631: cold acclimation	1.39E-03
47	GO:0010119: regulation of stomatal movement	1.39E-03
48	GO:0009645: response to low light intensity stimulus	1.44E-03
49	GO:0009772: photosynthetic electron transport in photosystem II	1.44E-03
50	GO:0009637: response to blue light	1.52E-03
51	GO:0055114: oxidation-reduction process	1.58E-03
52	GO:0046620: regulation of organ growth	1.66E-03
53	GO:0043068: positive regulation of programmed cell death	1.66E-03
54	GO:2000070: regulation of response to water deprivation	1.66E-03
55	GO:0007186: G-protein coupled receptor signaling pathway	1.89E-03
56	GO:0032544: plastid translation	1.89E-03
57	GO:0006002: fructose 6-phosphate metabolic process	1.89E-03
58	GO:0015996: chlorophyll catabolic process	1.89E-03
59	GO:0080167: response to karrikin	1.90E-03
60	GO:0010114: response to red light	1.94E-03
61	GO:0009644: response to high light intensity	2.10E-03
62	GO:0045454: cell redox homeostasis	2.39E-03
63	GO:0006949: syncytium formation	2.65E-03
64	GO:0000272: polysaccharide catabolic process	2.93E-03
65	GO:0009750: response to fructose	2.93E-03
66	GO:0010015: root morphogenesis	2.93E-03
67	GO:0045037: protein import into chloroplast stroma	3.21E-03
68	GO:0009740: gibberellic acid mediated signaling pathway	3.48E-03
69	GO:0006108: malate metabolic process	3.50E-03
70	GO:0006006: glucose metabolic process	3.50E-03
71	GO:0006094: gluconeogenesis	3.50E-03
72	GO:0005986: sucrose biosynthetic process	3.50E-03
73	GO:0046688: response to copper ion	4.10E-03
74	GO:0006636: unsaturated fatty acid biosynthetic process	4.42E-03
75	GO:0061077: chaperone-mediated protein folding	5.42E-03
76	GO:0009269: response to desiccation	5.42E-03
77	GO:0048511: rhythmic process	5.42E-03
78	GO:0009814: defense response, incompatible interaction	5.76E-03
79	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	6.12E-03
80	GO:0009411: response to UV	6.12E-03
81	GO:0045490: pectin catabolic process	6.35E-03
82	GO:0009739: response to gibberellin	7.11E-03
83	GO:0000413: protein peptidyl-prolyl isomerization	7.24E-03
84	GO:0042631: cellular response to water deprivation	7.24E-03
85	GO:0010182: sugar mediated signaling pathway	7.62E-03
86	GO:0015986: ATP synthesis coupled proton transport	8.02E-03
87	GO:0042752: regulation of circadian rhythm	8.02E-03
88	GO:0009749: response to glucose	8.42E-03
89	GO:0019252: starch biosynthetic process	8.42E-03
90	GO:0000302: response to reactive oxygen species	8.83E-03
91	GO:0042254: ribosome biogenesis	1.00E-02
92	GO:0009828: plant-type cell wall loosening	1.01E-02
93	GO:0009627: systemic acquired resistance	1.24E-02
94	GO:0042128: nitrate assimilation	1.24E-02
95	GO:0006869: lipid transport	1.61E-02
96	GO:0016051: carbohydrate biosynthetic process	1.63E-02
97	GO:0034599: cellular response to oxidative stress	1.68E-02
98	GO:0006099: tricarboxylic acid cycle	1.68E-02
99	GO:0030001: metal ion transport	1.79E-02
100	GO:0009926: auxin polar transport	1.95E-02
101	GO:0009744: response to sucrose	1.95E-02
102	GO:0009664: plant-type cell wall organization	2.29E-02
103	GO:0006364: rRNA processing	2.41E-02
104	GO:0006810: transport	2.56E-02
105	GO:0006096: glycolytic process	2.72E-02
106	GO:0009626: plant-type hypersensitive response	2.84E-02
107	GO:0042545: cell wall modification	3.04E-02
108	GO:0009416: response to light stimulus	3.21E-02
109	GO:0009611: response to wounding	3.28E-02
110	GO:0042744: hydrogen peroxide catabolic process	3.99E-02
111	GO:0009737: response to abscisic acid	4.05E-02
112	GO:0007623: circadian rhythm	4.58E-02

Rank	GO Term	Adjusted P value
1	GO:0045550: geranylgeranyl reductase activity	0.00E+00
2	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
3	GO:0016168: chlorophyll binding	3.35E-08
4	GO:0031409: pigment binding	6.66E-08
5	GO:0051920: peroxiredoxin activity	2.61E-05
6	GO:0016209: antioxidant activity	4.65E-05
7	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	8.78E-05
8	GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity	8.78E-05
9	GO:0004333: fumarate hydratase activity	8.78E-05
10	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	2.08E-04
11	GO:0008967: phosphoglycolate phosphatase activity	2.08E-04
12	GO:0042389: omega-3 fatty acid desaturase activity	2.08E-04
13	GO:0010297: heteropolysaccharide binding	2.08E-04
14	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	2.08E-04
15	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.21E-04
16	GO:0005528: FK506 binding	2.70E-04
17	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	3.48E-04
18	GO:0004324: ferredoxin-NADP+ reductase activity	3.48E-04
19	GO:0010277: chlorophyllide a oxygenase [overall] activity	3.48E-04
20	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	5.01E-04
21	GO:0004659: prenyltransferase activity	6.66E-04
22	GO:0003959: NADPH dehydrogenase activity	8.44E-04
23	GO:0004130: cytochrome-c peroxidase activity	1.03E-03
24	GO:0042578: phosphoric ester hydrolase activity	1.03E-03
25	GO:0016688: L-ascorbate peroxidase activity	1.03E-03
26	GO:0004602: glutathione peroxidase activity	1.23E-03
27	GO:0008235: metalloexopeptidase activity	1.44E-03
28	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	1.89E-03
29	GO:0051537: 2 iron, 2 sulfur cluster binding	2.10E-03
30	GO:0004177: aminopeptidase activity	2.93E-03
31	GO:0004089: carbonate dehydratase activity	3.50E-03
32	GO:0031072: heat shock protein binding	3.50E-03
33	GO:0008266: poly(U) RNA binding	3.80E-03
34	GO:0019843: rRNA binding	4.61E-03
35	GO:0030570: pectate lyase activity	6.12E-03
36	GO:0003756: protein disulfide isomerase activity	6.48E-03
37	GO:0046872: metal ion binding	6.54E-03
38	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	7.62E-03
39	GO:0050662: coenzyme binding	8.02E-03
40	GO:0004601: peroxidase activity	9.83E-03
41	GO:0016788: hydrolase activity, acting on ester bonds	1.00E-02
42	GO:0005509: calcium ion binding	1.42E-02
43	GO:0003993: acid phosphatase activity	1.68E-02
44	GO:0050661: NADP binding	1.79E-02
45	GO:0009055: electron carrier activity	1.94E-02
46	GO:0005198: structural molecule activity	2.12E-02
47	GO:0051287: NAD binding	2.24E-02
48	GO:0008289: lipid binding	2.52E-02
49	GO:0045330: aspartyl esterase activity	2.60E-02
50	GO:0004650: polygalacturonase activity	2.91E-02
51	GO:0030599: pectinesterase activity	2.97E-02
52	GO:0051082: unfolded protein binding	3.10E-02
53	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.71E-02
54	GO:0003735: structural constituent of ribosome	3.73E-02
55	GO:0016829: lyase activity	3.85E-02
56	GO:0005507: copper ion binding	4.55E-02

Rank	GO Term	Adjusted P value
1	GO:0009575: chromoplast stroma	0.00E+00
2	GO:0009535: chloroplast thylakoid membrane	2.49E-45
3	GO:0009579: thylakoid	5.68E-34
4	GO:0009507: chloroplast	1.58E-30
5	GO:0009534: chloroplast thylakoid	1.54E-28
6	GO:0009941: chloroplast envelope	2.16E-20
7	GO:0009543: chloroplast thylakoid lumen	2.42E-16
8	GO:0010287: plastoglobule	1.20E-14
9	GO:0009570: chloroplast stroma	8.75E-12
10	GO:0031977: thylakoid lumen	5.83E-11
11	GO:0010319: stromule	2.59E-10
12	GO:0030095: chloroplast photosystem II	2.62E-10
13	GO:0009522: photosystem I	6.70E-09
14	GO:0009538: photosystem I reaction center	3.82E-07
15	GO:0048046: apoplast	3.48E-06
16	GO:0030076: light-harvesting complex	4.91E-06
17	GO:0009654: photosystem II oxygen evolving complex	8.54E-06
18	GO:0009523: photosystem II	2.95E-05
19	GO:0019898: extrinsic component of membrane	2.95E-05
20	GO:0009783: photosystem II antenna complex	8.78E-05
21	GO:0009515: granal stacked thylakoid	8.78E-05
22	GO:0045239: tricarboxylic acid cycle enzyme complex	8.78E-05
23	GO:0030093: chloroplast photosystem I	2.08E-04
24	GO:0000427: plastid-encoded plastid RNA polymerase complex	2.08E-04
25	GO:0042651: thylakoid membrane	2.99E-04
26	GO:0009528: plastid inner membrane	3.48E-04
27	GO:0009517: PSII associated light-harvesting complex II	6.66E-04
28	GO:0009527: plastid outer membrane	6.66E-04
29	GO:0055035: plastid thylakoid membrane	8.44E-04
30	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.03E-03
31	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.14E-03
32	GO:0000311: plastid large ribosomal subunit	3.21E-03
33	GO:0016020: membrane	3.38E-03
34	GO:0009508: plastid chromosome	3.50E-03
35	GO:0005840: ribosome	3.84E-03
36	GO:0009505: plant-type cell wall	5.04E-03
37	GO:0015935: small ribosomal subunit	5.42E-03
38	GO:0009532: plastid stroma	5.42E-03
39	GO:0009295: nucleoid	1.05E-02
40	GO:0031969: chloroplast membrane	1.22E-02
41	GO:0009707: chloroplast outer membrane	1.38E-02
42	GO:0009706: chloroplast inner membrane	3.10E-02