Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G66960

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:2000541: positive regulation of protein geranylgeranylation0.00E+00
2GO:0006182: cGMP biosynthetic process0.00E+00
3GO:0042430: indole-containing compound metabolic process0.00E+00
4GO:0006793: phosphorus metabolic process0.00E+00
5GO:0042742: defense response to bacterium9.99E-06
6GO:0009697: salicylic acid biosynthetic process7.21E-05
7GO:0006099: tricarboxylic acid cycle1.07E-04
8GO:1900056: negative regulation of leaf senescence1.90E-04
9GO:0009617: response to bacterium2.47E-04
10GO:0046244: salicylic acid catabolic process2.57E-04
11GO:0048455: stamen formation2.57E-04
12GO:0051938: L-glutamate import2.57E-04
13GO:0015760: glucose-6-phosphate transport2.57E-04
14GO:1990641: response to iron ion starvation2.57E-04
15GO:0099132: ATP hydrolysis coupled cation transmembrane transport2.57E-04
16GO:0010421: hydrogen peroxide-mediated programmed cell death2.57E-04
17GO:1901183: positive regulation of camalexin biosynthetic process2.57E-04
18GO:0006979: response to oxidative stress2.75E-04
19GO:0010120: camalexin biosynthetic process2.98E-04
20GO:0009624: response to nematode4.54E-04
21GO:0009688: abscisic acid biosynthetic process4.99E-04
22GO:0097054: L-glutamate biosynthetic process5.68E-04
23GO:0043091: L-arginine import5.68E-04
24GO:0051592: response to calcium ion5.68E-04
25GO:0015802: basic amino acid transport5.68E-04
26GO:0009866: induced systemic resistance, ethylene mediated signaling pathway5.68E-04
27GO:0007051: spindle organization5.68E-04
28GO:0051788: response to misfolded protein5.68E-04
29GO:0006101: citrate metabolic process5.68E-04
30GO:0044419: interspecies interaction between organisms5.68E-04
31GO:0015865: purine nucleotide transport5.68E-04
32GO:0015712: hexose phosphate transport5.68E-04
33GO:1902000: homogentisate catabolic process5.68E-04
34GO:0006790: sulfur compound metabolic process6.59E-04
35GO:0009817: defense response to fungus, incompatible interaction6.64E-04
36GO:0009407: toxin catabolic process7.51E-04
37GO:0046686: response to cadmium ion8.15E-04
38GO:0035436: triose phosphate transmembrane transport9.22E-04
39GO:0010351: lithium ion transport9.22E-04
40GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway9.22E-04
41GO:0009072: aromatic amino acid family metabolic process9.22E-04
42GO:0015714: phosphoenolpyruvate transport9.22E-04
43GO:0046854: phosphatidylinositol phosphorylation9.38E-04
44GO:0006952: defense response1.01E-03
45GO:0010150: leaf senescence1.04E-03
46GO:0055114: oxidation-reduction process1.05E-03
47GO:0009751: response to salicylic acid1.15E-03
48GO:0006874: cellular calcium ion homeostasis1.27E-03
49GO:0006882: cellular zinc ion homeostasis1.32E-03
50GO:0045017: glycerolipid biosynthetic process1.32E-03
51GO:0010116: positive regulation of abscisic acid biosynthetic process1.32E-03
52GO:0070301: cellular response to hydrogen peroxide1.32E-03
53GO:0002239: response to oomycetes1.32E-03
54GO:0046902: regulation of mitochondrial membrane permeability1.32E-03
55GO:0006537: glutamate biosynthetic process1.32E-03
56GO:0003333: amino acid transmembrane transport1.39E-03
57GO:0006855: drug transmembrane transport1.48E-03
58GO:0031348: negative regulation of defense response1.52E-03
59GO:0009737: response to abscisic acid1.72E-03
60GO:0010109: regulation of photosynthesis1.76E-03
61GO:0019676: ammonia assimilation cycle1.76E-03
62GO:0010363: regulation of plant-type hypersensitive response1.76E-03
63GO:1901002: positive regulation of response to salt stress1.76E-03
64GO:0033356: UDP-L-arabinose metabolic process1.76E-03
65GO:0015713: phosphoglycerate transport1.76E-03
66GO:0006486: protein glycosylation1.78E-03
67GO:0010118: stomatal movement2.10E-03
68GO:0006097: glyoxylate cycle2.25E-03
69GO:0018344: protein geranylgeranylation2.25E-03
70GO:0010225: response to UV-C2.25E-03
71GO:0006405: RNA export from nucleus2.25E-03
72GO:0000304: response to singlet oxygen2.25E-03
73GO:0034052: positive regulation of plant-type hypersensitive response2.25E-03
74GO:0030041: actin filament polymerization2.25E-03
75GO:0009620: response to fungus2.48E-03
76GO:0006468: protein phosphorylation2.66E-03
77GO:0009643: photosynthetic acclimation2.77E-03
78GO:0006561: proline biosynthetic process2.77E-03
79GO:0006121: mitochondrial electron transport, succinate to ubiquinone2.77E-03
80GO:0010405: arabinogalactan protein metabolic process2.77E-03
81GO:0010256: endomembrane system organization2.77E-03
82GO:0043248: proteasome assembly2.77E-03
83GO:0018258: protein O-linked glycosylation via hydroxyproline2.77E-03
84GO:0000060: protein import into nucleus, translocation2.77E-03
85GO:0000302: response to reactive oxygen species2.79E-03
86GO:0007264: small GTPase mediated signal transduction2.98E-03
87GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response3.33E-03
88GO:0042372: phylloquinone biosynthetic process3.33E-03
89GO:0006120: mitochondrial electron transport, NADH to ubiquinone3.33E-03
90GO:0010252: auxin homeostasis3.38E-03
91GO:0000082: G1/S transition of mitotic cell cycle3.93E-03
92GO:1902074: response to salt3.93E-03
93GO:0048528: post-embryonic root development3.93E-03
94GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c3.93E-03
95GO:0042773: ATP synthesis coupled electron transport3.93E-03
96GO:0030026: cellular manganese ion homeostasis3.93E-03
97GO:1900057: positive regulation of leaf senescence3.93E-03
98GO:0009615: response to virus4.03E-03
99GO:0009627: systemic acquired resistance4.49E-03
100GO:0006102: isocitrate metabolic process4.56E-03
101GO:0009061: anaerobic respiration4.56E-03
102GO:0009850: auxin metabolic process4.56E-03
103GO:0055085: transmembrane transport4.89E-03
104GO:0009408: response to heat5.07E-03
105GO:0009832: plant-type cell wall biogenesis5.52E-03
106GO:0010112: regulation of systemic acquired resistance5.92E-03
107GO:0009060: aerobic respiration5.92E-03
108GO:0007338: single fertilization5.92E-03
109GO:0006098: pentose-phosphate shunt5.92E-03
110GO:0008202: steroid metabolic process6.64E-03
111GO:0030042: actin filament depolymerization6.64E-03
112GO:0048354: mucilage biosynthetic process involved in seed coat development6.64E-03
113GO:0010162: seed dormancy process7.40E-03
114GO:0055062: phosphate ion homeostasis7.40E-03
115GO:0007064: mitotic sister chromatid cohesion7.40E-03
116GO:0006839: mitochondrial transport7.59E-03
117GO:0000272: polysaccharide catabolic process8.19E-03
118GO:0016485: protein processing8.19E-03
119GO:0015770: sucrose transport8.19E-03
120GO:0009807: lignan biosynthetic process8.19E-03
121GO:0009744: response to sucrose8.59E-03
122GO:0051707: response to other organism8.59E-03
123GO:0012501: programmed cell death9.00E-03
124GO:0002213: defense response to insect9.00E-03
125GO:0009636: response to toxic substance9.66E-03
126GO:0009718: anthocyanin-containing compound biosynthetic process9.85E-03
127GO:0006094: gluconeogenesis9.85E-03
128GO:0002237: response to molecule of bacterial origin1.07E-02
129GO:0070588: calcium ion transmembrane transport1.16E-02
130GO:0009969: xyloglucan biosynthetic process1.16E-02
131GO:0010200: response to chitin1.34E-02
132GO:0005992: trehalose biosynthetic process1.35E-02
133GO:0030150: protein import into mitochondrial matrix1.35E-02
134GO:0006096: glycolytic process1.37E-02
135GO:0009626: plant-type hypersensitive response1.46E-02
136GO:0016998: cell wall macromolecule catabolic process1.55E-02
137GO:0071456: cellular response to hypoxia1.65E-02
138GO:0019748: secondary metabolic process1.65E-02
139GO:0035428: hexose transmembrane transport1.65E-02
140GO:0015031: protein transport1.67E-02
141GO:0006012: galactose metabolic process1.76E-02
142GO:0006511: ubiquitin-dependent protein catabolic process1.92E-02
143GO:0051028: mRNA transport1.97E-02
144GO:0008033: tRNA processing2.09E-02
145GO:0042391: regulation of membrane potential2.09E-02
146GO:0046323: glucose import2.20E-02
147GO:0048544: recognition of pollen2.32E-02
148GO:0006814: sodium ion transport2.32E-02
149GO:0042752: regulation of circadian rhythm2.32E-02
150GO:0009851: auxin biosynthetic process2.43E-02
151GO:0009749: response to glucose2.43E-02
152GO:0010193: response to ozone2.56E-02
153GO:0002229: defense response to oomycetes2.56E-02
154GO:0030163: protein catabolic process2.80E-02
155GO:0009567: double fertilization forming a zygote and endosperm2.93E-02
156GO:0051607: defense response to virus3.19E-02
157GO:0007166: cell surface receptor signaling pathway3.27E-02
158GO:0009651: response to salt stress3.42E-02
159GO:0010029: regulation of seed germination3.46E-02
160GO:0009816: defense response to bacterium, incompatible interaction3.46E-02
161GO:0006974: cellular response to DNA damage stimulus3.59E-02
162GO:0016311: dephosphorylation3.87E-02
163GO:0008219: cell death4.01E-02
164GO:0030244: cellulose biosynthetic process4.01E-02
165GO:0048767: root hair elongation4.16E-02
166GO:0006499: N-terminal protein myristoylation4.30E-02
167GO:0010043: response to zinc ion4.45E-02
168GO:0007568: aging4.45E-02
169GO:0006865: amino acid transport4.60E-02
170GO:0009853: photorespiration4.75E-02
171GO:0045087: innate immune response4.75E-02
RankGO TermAdjusted P value
1GO:0016034: maleylacetoacetate isomerase activity0.00E+00
2GO:1990837: sequence-specific double-stranded DNA binding0.00E+00
3GO:0051670: inulinase activity0.00E+00
4GO:0015930: glutamate synthase activity0.00E+00
5GO:0005092: GDP-dissociation inhibitor activity0.00E+00
6GO:0016312: inositol bisphosphate phosphatase activity0.00E+00
7GO:0005093: Rab GDP-dissociation inhibitor activity1.11E-05
8GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity1.11E-05
9GO:0010279: indole-3-acetic acid amido synthetase activity4.54E-05
10GO:0009055: electron carrier activity4.97E-05
11GO:0016614: oxidoreductase activity, acting on CH-OH group of donors8.30E-05
12GO:0051539: 4 iron, 4 sulfur cluster binding1.25E-04
13GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity1.45E-04
14GO:0005524: ATP binding1.95E-04
15GO:0031219: levanase activity2.57E-04
16GO:0016041: glutamate synthase (ferredoxin) activity2.57E-04
17GO:0031127: alpha-(1,2)-fucosyltransferase activity2.57E-04
18GO:0051669: fructan beta-fructosidase activity2.57E-04
19GO:0008909: isochorismate synthase activity2.57E-04
20GO:0016301: kinase activity4.78E-04
21GO:0050660: flavin adenine dinucleotide binding5.25E-04
22GO:0008517: folic acid transporter activity5.68E-04
23GO:0004776: succinate-CoA ligase (GDP-forming) activity5.68E-04
24GO:0003994: aconitate hydratase activity5.68E-04
25GO:0015152: glucose-6-phosphate transmembrane transporter activity5.68E-04
26GO:0032934: sterol binding5.68E-04
27GO:0004775: succinate-CoA ligase (ADP-forming) activity5.68E-04
28GO:0048531: beta-1,3-galactosyltransferase activity5.68E-04
29GO:0015036: disulfide oxidoreductase activity5.68E-04
30GO:0008559: xenobiotic-transporting ATPase activity5.76E-04
31GO:0005096: GTPase activator activity7.06E-04
32GO:0004383: guanylate cyclase activity9.22E-04
33GO:0071917: triose-phosphate transmembrane transporter activity9.22E-04
34GO:0004364: glutathione transferase activity1.16E-03
35GO:0010178: IAA-amino acid conjugate hydrolase activity1.32E-03
36GO:0015189: L-lysine transmembrane transporter activity1.32E-03
37GO:0001653: peptide receptor activity1.32E-03
38GO:0015181: arginine transmembrane transporter activity1.32E-03
39GO:0015120: phosphoglycerate transmembrane transporter activity1.76E-03
40GO:0015368: calcium:cation antiporter activity1.76E-03
41GO:0015369: calcium:proton antiporter activity1.76E-03
42GO:0005313: L-glutamate transmembrane transporter activity1.76E-03
43GO:0004031: aldehyde oxidase activity1.76E-03
44GO:0050302: indole-3-acetaldehyde oxidase activity1.76E-03
45GO:0016491: oxidoreductase activity1.79E-03
46GO:0004674: protein serine/threonine kinase activity1.88E-03
47GO:0005496: steroid binding2.25E-03
48GO:0051538: 3 iron, 4 sulfur cluster binding2.25E-03
49GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity2.25E-03
50GO:0005471: ATP:ADP antiporter activity2.25E-03
51GO:0015145: monosaccharide transmembrane transporter activity2.25E-03
52GO:0008177: succinate dehydrogenase (ubiquinone) activity2.25E-03
53GO:0017137: Rab GTPase binding2.25E-03
54GO:0000104: succinate dehydrogenase activity2.25E-03
55GO:0010181: FMN binding2.43E-03
56GO:1990714: hydroxyproline O-galactosyltransferase activity2.77E-03
57GO:0004332: fructose-bisphosphate aldolase activity2.77E-03
58GO:0031593: polyubiquitin binding2.77E-03
59GO:0004556: alpha-amylase activity2.77E-03
60GO:0102229: amylopectin maltohydrolase activity2.77E-03
61GO:0008137: NADH dehydrogenase (ubiquinone) activity2.79E-03
62GO:0003978: UDP-glucose 4-epimerase activity3.33E-03
63GO:0051920: peroxiredoxin activity3.33E-03
64GO:0016161: beta-amylase activity3.33E-03
65GO:0004144: diacylglycerol O-acyltransferase activity3.33E-03
66GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity3.93E-03
67GO:0008506: sucrose:proton symporter activity3.93E-03
68GO:0015491: cation:cation antiporter activity4.56E-03
69GO:0016209: antioxidant activity4.56E-03
70GO:0030247: polysaccharide binding4.74E-03
71GO:0008142: oxysterol binding5.22E-03
72GO:0015297: antiporter activity5.27E-03
73GO:0015238: drug transmembrane transporter activity5.52E-03
74GO:0008417: fucosyltransferase activity5.92E-03
75GO:0030955: potassium ion binding6.64E-03
76GO:0004743: pyruvate kinase activity6.64E-03
77GO:0015174: basic amino acid transmembrane transporter activity6.64E-03
78GO:0045309: protein phosphorylated amino acid binding6.64E-03
79GO:0008171: O-methyltransferase activity7.40E-03
80GO:0042626: ATPase activity, coupled to transmembrane movement of substances7.58E-03
81GO:0004129: cytochrome-c oxidase activity8.19E-03
82GO:0019904: protein domain specific binding8.19E-03
83GO:0008794: arsenate reductase (glutaredoxin) activity8.19E-03
84GO:0008378: galactosyltransferase activity9.00E-03
85GO:0051537: 2 iron, 2 sulfur cluster binding9.29E-03
86GO:0005509: calcium ion binding9.59E-03
87GO:0005315: inorganic phosphate transmembrane transporter activity9.85E-03
88GO:0015114: phosphate ion transmembrane transporter activity9.85E-03
89GO:0005388: calcium-transporting ATPase activity9.85E-03
90GO:0015266: protein channel activity9.85E-03
91GO:0004022: alcohol dehydrogenase (NAD) activity9.85E-03
92GO:0043531: ADP binding1.10E-02
93GO:0004970: ionotropic glutamate receptor activity1.16E-02
94GO:0005217: intracellular ligand-gated ion channel activity1.16E-02
95GO:0030552: cAMP binding1.16E-02
96GO:0030553: cGMP binding1.16E-02
97GO:0015171: amino acid transmembrane transporter activity1.29E-02
98GO:0051536: iron-sulfur cluster binding1.35E-02
99GO:0003954: NADH dehydrogenase activity1.35E-02
100GO:0043424: protein histidine kinase binding1.45E-02
101GO:0005216: ion channel activity1.45E-02
102GO:0004298: threonine-type endopeptidase activity1.55E-02
103GO:0003779: actin binding1.61E-02
104GO:0015035: protein disulfide oxidoreductase activity1.70E-02
105GO:0022891: substrate-specific transmembrane transporter activity1.76E-02
106GO:0016758: transferase activity, transferring hexosyl groups2.02E-02
107GO:0005249: voltage-gated potassium channel activity2.09E-02
108GO:0030551: cyclic nucleotide binding2.09E-02
109GO:0005199: structural constituent of cell wall2.20E-02
110GO:0008536: Ran GTPase binding2.20E-02
111GO:0005355: glucose transmembrane transporter activity2.32E-02
112GO:0048038: quinone binding2.56E-02
113GO:0004197: cysteine-type endopeptidase activity2.68E-02
114GO:0008237: metallopeptidase activity3.06E-02
115GO:0008194: UDP-glycosyltransferase activity3.20E-02
116GO:0051213: dioxygenase activity3.32E-02
117GO:0016757: transferase activity, transferring glycosyl groups3.51E-02
118GO:0008757: S-adenosylmethionine-dependent methyltransferase activity3.87E-02
119GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.01E-02
120GO:0004222: metalloendopeptidase activity4.30E-02
121GO:0004601: peroxidase activity4.42E-02
122GO:0050897: cobalt ion binding4.45E-02
123GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors4.75E-02
RankGO TermAdjusted P value
1GO:0016021: integral component of membrane3.46E-05
2GO:0005886: plasma membrane4.99E-05
3GO:0045273: respiratory chain complex II2.41E-04
4GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)2.41E-04
5GO:0005911: cell-cell junction2.57E-04
6GO:0031314: extrinsic component of mitochondrial inner membrane5.68E-04
7GO:0009530: primary cell wall9.22E-04
8GO:0005751: mitochondrial respiratory chain complex IV9.22E-04
9GO:0005968: Rab-protein geranylgeranyltransferase complex1.32E-03
10GO:0005794: Golgi apparatus1.38E-03
11GO:0005829: cytosol3.90E-03
12GO:0005743: mitochondrial inner membrane4.54E-03
13GO:0031305: integral component of mitochondrial inner membrane4.56E-03
14GO:0005774: vacuolar membrane5.44E-03
15GO:0000325: plant-type vacuole6.07E-03
16GO:0008540: proteasome regulatory particle, base subcomplex6.64E-03
17GO:0005750: mitochondrial respiratory chain complex III1.07E-02
18GO:0000502: proteasome complex1.16E-02
19GO:0005758: mitochondrial intermembrane space1.35E-02
20GO:0005747: mitochondrial respiratory chain complex I1.42E-02
21GO:0045271: respiratory chain complex I1.45E-02
22GO:0005839: proteasome core complex1.55E-02
23GO:0005741: mitochondrial outer membrane1.55E-02
24GO:0009536: plastid1.57E-02
25GO:0015629: actin cytoskeleton1.76E-02
26GO:0005744: mitochondrial inner membrane presequence translocase complex1.86E-02
27GO:0005759: mitochondrial matrix2.61E-02
28GO:0005783: endoplasmic reticulum2.70E-02
29GO:0009705: plant-type vacuole membrane2.87E-02
30GO:0032580: Golgi cisterna membrane2.93E-02
31GO:0005887: integral component of plasma membrane3.08E-02
32GO:0048046: apoplast3.96E-02
33GO:0005643: nuclear pore4.01E-02
34GO:0005618: cell wall4.63E-02
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Gene type



Gene DE type