co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G65980

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046292: formaldehyde metabolic process	0.00E+00
2	GO:0010336: gibberellic acid homeostasis	0.00E+00
3	GO:0002376: immune system process	0.00E+00
4	GO:0006069: ethanol oxidation	0.00E+00
5	GO:0006182: cGMP biosynthetic process	0.00E+00
6	GO:0006592: ornithine biosynthetic process	0.00E+00
7	GO:0046686: response to cadmium ion	1.65E-09
8	GO:0006099: tricarboxylic acid cycle	2.18E-08
9	GO:0006101: citrate metabolic process	1.05E-06
10	GO:0006102: isocitrate metabolic process	1.31E-06
11	GO:0006499: N-terminal protein myristoylation	1.58E-05
12	GO:0006097: glyoxylate cycle	2.79E-05
13	GO:0006952: defense response	6.39E-05
14	GO:0007292: female gamete generation	1.46E-04
15	GO:0051938: L-glutamate import	1.46E-04
16	GO:1990641: response to iron ion starvation	1.46E-04
17	GO:0010726: positive regulation of hydrogen peroxide metabolic process	1.46E-04
18	GO:0006007: glucose catabolic process	1.46E-04
19	GO:0046244: salicylic acid catabolic process	1.46E-04
20	GO:0034975: protein folding in endoplasmic reticulum	1.46E-04
21	GO:0035266: meristem growth	1.46E-04
22	GO:0008219: cell death	2.33E-04
23	GO:0045087: innate immune response	3.21E-04
24	GO:0051788: response to misfolded protein	3.33E-04
25	GO:0007051: spindle organization	3.33E-04
26	GO:0043091: L-arginine import	3.33E-04
27	GO:0010155: regulation of proton transport	3.33E-04
28	GO:0090351: seedling development	4.32E-04
29	GO:0060968: regulation of gene silencing	5.47E-04
30	GO:0002239: response to oomycetes	7.83E-04
31	GO:0072334: UDP-galactose transmembrane transport	7.83E-04
32	GO:0042823: pyridoxal phosphate biosynthetic process	7.83E-04
33	GO:1902584: positive regulation of response to water deprivation	1.04E-03
34	GO:0002229: defense response to oomycetes	1.27E-03
35	GO:0006405: RNA export from nucleus	1.31E-03
36	GO:0006465: signal peptide processing	1.31E-03
37	GO:0045927: positive regulation of growth	1.31E-03
38	GO:0009697: salicylic acid biosynthetic process	1.31E-03
39	GO:0007029: endoplasmic reticulum organization	1.31E-03
40	GO:0007264: small GTPase mediated signal transduction	1.35E-03
41	GO:0009751: response to salicylic acid	1.44E-03
42	GO:0048232: male gamete generation	1.61E-03
43	GO:0043248: proteasome assembly	1.61E-03
44	GO:0035435: phosphate ion transmembrane transport	1.61E-03
45	GO:0000060: protein import into nucleus, translocation	1.61E-03
46	GO:0006014: D-ribose metabolic process	1.61E-03
47	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.61E-03
48	GO:0006561: proline biosynthetic process	1.61E-03
49	GO:0010942: positive regulation of cell death	1.61E-03
50	GO:0006121: mitochondrial electron transport, succinate to ubiquinone	1.61E-03
51	GO:0048827: phyllome development	1.61E-03
52	GO:0034389: lipid particle organization	1.93E-03
53	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	1.93E-03
54	GO:0010150: leaf senescence	2.00E-03
55	GO:1900056: negative regulation of leaf senescence	2.27E-03
56	GO:0080186: developmental vegetative growth	2.27E-03
57	GO:0019745: pentacyclic triterpenoid biosynthetic process	2.27E-03
58	GO:0000082: G1/S transition of mitotic cell cycle	2.27E-03
59	GO:0042773: ATP synthesis coupled electron transport	2.27E-03
60	GO:0009617: response to bacterium	2.50E-03
61	GO:0006875: cellular metal ion homeostasis	2.63E-03
62	GO:0010078: maintenance of root meristem identity	2.63E-03
63	GO:0042742: defense response to bacterium	2.65E-03
64	GO:0006979: response to oxidative stress	2.69E-03
65	GO:0009853: photorespiration	2.98E-03
66	GO:0010120: camalexin biosynthetic process	3.00E-03
67	GO:0006526: arginine biosynthetic process	3.00E-03
68	GO:0030968: endoplasmic reticulum unfolded protein response	3.00E-03
69	GO:0046916: cellular transition metal ion homeostasis	3.40E-03
70	GO:0043067: regulation of programmed cell death	3.81E-03
71	GO:0030042: actin filament depolymerization	3.81E-03
72	GO:0009299: mRNA transcription	4.23E-03
73	GO:0048829: root cap development	4.23E-03
74	GO:0006855: drug transmembrane transport	4.46E-03
75	GO:0010015: root morphogenesis	4.67E-03
76	GO:0009807: lignan biosynthetic process	4.67E-03
77	GO:0000272: polysaccharide catabolic process	4.67E-03
78	GO:0006790: sulfur compound metabolic process	5.13E-03
79	GO:0006511: ubiquitin-dependent protein catabolic process	5.60E-03
80	GO:0009718: anthocyanin-containing compound biosynthetic process	5.60E-03
81	GO:0006096: glycolytic process	6.08E-03
82	GO:0002237: response to molecule of bacterial origin	6.09E-03
83	GO:0009933: meristem structural organization	6.09E-03
84	GO:0042343: indole glucosinolate metabolic process	6.59E-03
85	GO:0046854: phosphatidylinositol phosphorylation	6.59E-03
86	GO:0009620: response to fungus	6.68E-03
87	GO:0032259: methylation	7.08E-03
88	GO:0034976: response to endoplasmic reticulum stress	7.10E-03
89	GO:0006071: glycerol metabolic process	7.10E-03
90	GO:0005992: trehalose biosynthetic process	7.63E-03
91	GO:0006487: protein N-linked glycosylation	7.63E-03
92	GO:0009695: jasmonic acid biosynthetic process	8.18E-03
93	GO:0006825: copper ion transport	8.18E-03
94	GO:0031408: oxylipin biosynthetic process	8.73E-03
95	GO:0003333: amino acid transmembrane transport	8.73E-03
96	GO:0016998: cell wall macromolecule catabolic process	8.73E-03
97	GO:0098542: defense response to other organism	8.73E-03
98	GO:0030433: ubiquitin-dependent ERAD pathway	9.30E-03
99	GO:0031348: negative regulation of defense response	9.30E-03
100	GO:0019748: secondary metabolic process	9.30E-03
101	GO:0051028: mRNA transport	1.11E-02
102	GO:0008033: tRNA processing	1.17E-02
103	GO:0010118: stomatal movement	1.17E-02
104	GO:0048868: pollen tube development	1.24E-02
105	GO:0019252: starch biosynthetic process	1.37E-02
106	GO:0015031: protein transport	1.47E-02
107	GO:0009555: pollen development	1.55E-02
108	GO:0009567: double fertilization forming a zygote and endosperm	1.64E-02
109	GO:0006464: cellular protein modification process	1.64E-02
110	GO:0010286: heat acclimation	1.72E-02
111	GO:0006508: proteolysis	1.86E-02
112	GO:0009615: response to virus	1.86E-02
113	GO:0009607: response to biotic stimulus	1.94E-02
114	GO:0042128: nitrate assimilation	2.01E-02
115	GO:0006457: protein folding	2.15E-02
116	GO:0016311: dephosphorylation	2.17E-02
117	GO:0009817: defense response to fungus, incompatible interaction	2.25E-02
118	GO:0010311: lateral root formation	2.33E-02
119	GO:0009407: toxin catabolic process	2.41E-02
120	GO:0010043: response to zinc ion	2.49E-02
121	GO:0045454: cell redox homeostasis	2.92E-02
122	GO:0030001: metal ion transport	2.92E-02
123	GO:0009965: leaf morphogenesis	3.47E-02
124	GO:0006468: protein phosphorylation	3.52E-02
125	GO:0009408: response to heat	3.60E-02
126	GO:0031347: regulation of defense response	3.65E-02
127	GO:0042538: hyperosmotic salinity response	3.75E-02
128	GO:0009664: plant-type cell wall organization	3.75E-02
129	GO:0009809: lignin biosynthetic process	3.94E-02
130	GO:0051603: proteolysis involved in cellular protein catabolic process	4.04E-02
131	GO:0006857: oligopeptide transport	4.14E-02
132	GO:0048316: seed development	4.54E-02
133	GO:0048367: shoot system development	4.54E-02
134	GO:0009553: embryo sac development	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0051670: inulinase activity	0.00E+00
2	GO:0050220: prostaglandin-E synthase activity	0.00E+00
3	GO:0051903: S-(hydroxymethyl)glutathione dehydrogenase activity	0.00E+00
4	GO:0016312: inositol bisphosphate phosphatase activity	0.00E+00
5	GO:0008777: acetylornithine deacetylase activity	0.00E+00
6	GO:0080007: S-nitrosoglutathione reductase activity	0.00E+00
7	GO:0003994: aconitate hydratase activity	1.05E-06
8	GO:0051539: 4 iron, 4 sulfur cluster binding	1.07E-06
9	GO:0051669: fructan beta-fructosidase activity	1.46E-04
10	GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity	1.46E-04
11	GO:0004321: fatty-acyl-CoA synthase activity	1.46E-04
12	GO:0031219: levanase activity	1.46E-04
13	GO:0004129: cytochrome-c oxidase activity	2.59E-04
14	GO:0046537: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity	3.33E-04
15	GO:0004775: succinate-CoA ligase (ADP-forming) activity	3.33E-04
16	GO:0018708: thiol S-methyltransferase activity	3.33E-04
17	GO:0019172: glyoxalase III activity	3.33E-04
18	GO:0015036: disulfide oxidoreductase activity	3.33E-04
19	GO:0004776: succinate-CoA ligase (GDP-forming) activity	3.33E-04
20	GO:0051536: iron-sulfur cluster binding	5.33E-04
21	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	5.47E-04
22	GO:0004383: guanylate cyclase activity	5.47E-04
23	GO:0016805: dipeptidase activity	5.47E-04
24	GO:0005093: Rab GDP-dissociation inhibitor activity	5.47E-04
25	GO:0015189: L-lysine transmembrane transporter activity	7.83E-04
26	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	7.83E-04
27	GO:0015181: arginine transmembrane transporter activity	7.83E-04
28	GO:0004449: isocitrate dehydrogenase (NAD+) activity	7.83E-04
29	GO:0042299: lupeol synthase activity	7.83E-04
30	GO:0004108: citrate (Si)-synthase activity	7.83E-04
31	GO:0003756: protein disulfide isomerase activity	8.29E-04
32	GO:0005313: L-glutamate transmembrane transporter activity	1.04E-03
33	GO:0016866: intramolecular transferase activity	1.04E-03
34	GO:0016004: phospholipase activator activity	1.04E-03
35	GO:0008137: NADH dehydrogenase (ubiquinone) activity	1.27E-03
36	GO:0015301: anion:anion antiporter activity	1.31E-03
37	GO:0005459: UDP-galactose transmembrane transporter activity	1.31E-03
38	GO:0005452: inorganic anion exchanger activity	1.31E-03
39	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	1.31E-03
40	GO:0000104: succinate dehydrogenase activity	1.31E-03
41	GO:0005507: copper ion binding	1.43E-03
42	GO:0102229: amylopectin maltohydrolase activity	1.61E-03
43	GO:0036402: proteasome-activating ATPase activity	1.61E-03
44	GO:0005524: ATP binding	1.91E-03
45	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.93E-03
46	GO:0004747: ribokinase activity	1.93E-03
47	GO:0016161: beta-amylase activity	1.93E-03
48	GO:0004602: glutathione peroxidase activity	1.93E-03
49	GO:0008235: metalloexopeptidase activity	2.27E-03
50	GO:0043295: glutathione binding	2.27E-03
51	GO:0005509: calcium ion binding	2.30E-03
52	GO:0015238: drug transmembrane transporter activity	2.47E-03
53	GO:0005096: GTPase activator activity	2.47E-03
54	GO:0008865: fructokinase activity	2.63E-03
55	GO:0030145: manganese ion binding	2.72E-03
56	GO:0046914: transition metal ion binding	3.00E-03
57	GO:0016207: 4-coumarate-CoA ligase activity	3.40E-03
58	GO:0008889: glycerophosphodiester phosphodiesterase activity	3.40E-03
59	GO:0015174: basic amino acid transmembrane transporter activity	3.81E-03
60	GO:0008171: O-methyltransferase activity	4.23E-03
61	GO:0004177: aminopeptidase activity	4.67E-03
62	GO:0004674: protein serine/threonine kinase activity	5.27E-03
63	GO:0009982: pseudouridine synthase activity	5.60E-03
64	GO:0004022: alcohol dehydrogenase (NAD) activity	5.60E-03
65	GO:0005315: inorganic phosphate transmembrane transporter activity	5.60E-03
66	GO:0017025: TBP-class protein binding	6.59E-03
67	GO:0051082: unfolded protein binding	7.32E-03
68	GO:0015035: protein disulfide oxidoreductase activity	7.54E-03
69	GO:0003954: NADH dehydrogenase activity	7.63E-03
70	GO:0009055: electron carrier activity	8.18E-03
71	GO:0004298: threonine-type endopeptidase activity	8.73E-03
72	GO:0005215: transporter activity	1.19E-02
73	GO:0015297: antiporter activity	1.21E-02
74	GO:0008536: Ran GTPase binding	1.24E-02
75	GO:0005199: structural constituent of cell wall	1.24E-02
76	GO:0016853: isomerase activity	1.30E-02
77	GO:0010181: FMN binding	1.30E-02
78	GO:0016887: ATPase activity	1.31E-02
79	GO:0016301: kinase activity	1.32E-02
80	GO:0048038: quinone binding	1.43E-02
81	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.57E-02
82	GO:0008483: transaminase activity	1.72E-02
83	GO:0008237: metallopeptidase activity	1.72E-02
84	GO:0051213: dioxygenase activity	1.86E-02
85	GO:0008168: methyltransferase activity	1.89E-02
86	GO:0030247: polysaccharide binding	2.09E-02
87	GO:0043531: ADP binding	2.16E-02
88	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.17E-02
89	GO:0008233: peptidase activity	2.40E-02
90	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.66E-02
91	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.83E-02
92	GO:0004364: glutathione transferase activity	3.10E-02
93	GO:0051537: 2 iron, 2 sulfur cluster binding	3.37E-02
94	GO:0015171: amino acid transmembrane transporter activity	4.24E-02
95	GO:0008234: cysteine-type peptidase activity	4.24E-02
96	GO:0045735: nutrient reservoir activity	4.44E-02
97	GO:0016874: ligase activity	4.85E-02
98	GO:0003779: actin binding	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0097708: intracellular vesicle	0.00E+00
2	GO:0005886: plasma membrane	6.82E-05
3	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	1.02E-04
4	GO:0005783: endoplasmic reticulum	1.49E-04
5	GO:0005739: mitochondrion	3.06E-04
6	GO:0045254: pyruvate dehydrogenase complex	3.33E-04
7	GO:0031314: extrinsic component of mitochondrial inner membrane	3.33E-04
8	GO:0005751: mitochondrial respiratory chain complex IV	5.47E-04
9	GO:0009530: primary cell wall	5.47E-04
10	GO:0045271: respiratory chain complex I	5.87E-04
11	GO:0000502: proteasome complex	6.52E-04
12	GO:0005747: mitochondrial respiratory chain complex I	8.36E-04
13	GO:0009898: cytoplasmic side of plasma membrane	1.04E-03
14	GO:0005746: mitochondrial respiratory chain	1.31E-03
15	GO:0008250: oligosaccharyltransferase complex	1.31E-03
16	GO:0005789: endoplasmic reticulum membrane	1.53E-03
17	GO:0005798: Golgi-associated vesicle	1.61E-03
18	GO:0005759: mitochondrial matrix	1.77E-03
19	GO:0030173: integral component of Golgi membrane	1.93E-03
20	GO:0031597: cytosolic proteasome complex	1.93E-03
21	GO:0005773: vacuole	2.12E-03
22	GO:0031595: nuclear proteasome complex	2.27E-03
23	GO:0005774: vacuolar membrane	2.45E-03
24	GO:0045273: respiratory chain complex II	2.63E-03
25	GO:0048046: apoplast	2.73E-03
26	GO:0005811: lipid particle	3.00E-03
27	GO:0005618: cell wall	3.30E-03
28	GO:0031090: organelle membrane	3.40E-03
29	GO:0008540: proteasome regulatory particle, base subcomplex	3.81E-03
30	GO:0005829: cytosol	4.64E-03
31	GO:0031966: mitochondrial membrane	4.80E-03
32	GO:0030176: integral component of endoplasmic reticulum membrane	6.59E-03
33	GO:0005839: proteasome core complex	8.73E-03
34	GO:0015629: actin cytoskeleton	9.89E-03
35	GO:0000785: chromatin	1.50E-02
36	GO:0009506: plasmodesma	1.78E-02
37	GO:0009507: chloroplast	1.79E-02
38	GO:0005777: peroxisome	1.85E-02
39	GO:0005643: nuclear pore	2.25E-02
40	GO:0031969: chloroplast membrane	2.44E-02
41	GO:0016021: integral component of membrane	4.88E-02
42	GO:0009505: plant-type cell wall	4.94E-02