co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G65590

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
2	GO:0090706: specification of plant organ position	0.00E+00
3	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
4	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
5	GO:0006000: fructose metabolic process	2.91E-06
6	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	8.37E-05
7	GO:0006002: fructose 6-phosphate metabolic process	9.94E-05
8	GO:0000476: maturation of 4.5S rRNA	1.23E-04
9	GO:0051180: vitamin transport	1.23E-04
10	GO:0000967: rRNA 5'-end processing	1.23E-04
11	GO:0070509: calcium ion import	1.23E-04
12	GO:0007263: nitric oxide mediated signal transduction	1.23E-04
13	GO:0030974: thiamine pyrophosphate transport	1.23E-04
14	GO:0010480: microsporocyte differentiation	1.23E-04
15	GO:0031338: regulation of vesicle fusion	1.23E-04
16	GO:0006723: cuticle hydrocarbon biosynthetic process	1.23E-04
17	GO:0042547: cell wall modification involved in multidimensional cell growth	1.23E-04
18	GO:0034628: 'de novo' NAD biosynthetic process from aspartate	1.23E-04
19	GO:0043609: regulation of carbon utilization	1.23E-04
20	GO:0010450: inflorescence meristem growth	1.23E-04
21	GO:0010115: regulation of abscisic acid biosynthetic process	2.86E-04
22	GO:0030388: fructose 1,6-bisphosphate metabolic process	2.86E-04
23	GO:0034470: ncRNA processing	2.86E-04
24	GO:0015893: drug transport	2.86E-04
25	GO:0043617: cellular response to sucrose starvation	4.72E-04
26	GO:0051176: positive regulation of sulfur metabolic process	4.72E-04
27	GO:0090630: activation of GTPase activity	4.72E-04
28	GO:2001295: malonyl-CoA biosynthetic process	4.72E-04
29	GO:0045165: cell fate commitment	4.72E-04
30	GO:0043447: alkane biosynthetic process	4.72E-04
31	GO:0006013: mannose metabolic process	4.72E-04
32	GO:0009416: response to light stimulus	5.16E-04
33	GO:0046777: protein autophosphorylation	6.45E-04
34	GO:0034059: response to anoxia	6.76E-04
35	GO:0080170: hydrogen peroxide transmembrane transport	6.76E-04
36	GO:0045727: positive regulation of translation	8.97E-04
37	GO:0006468: protein phosphorylation	1.02E-03
38	GO:1902183: regulation of shoot apical meristem development	1.13E-03
39	GO:0009435: NAD biosynthetic process	1.13E-03
40	GO:0010158: abaxial cell fate specification	1.13E-03
41	GO:0030163: protein catabolic process	1.15E-03
42	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	1.39E-03
43	GO:0006751: glutathione catabolic process	1.39E-03
44	GO:0042549: photosystem II stabilization	1.39E-03
45	GO:0000741: karyogamy	1.39E-03
46	GO:0006694: steroid biosynthetic process	1.66E-03
47	GO:0015995: chlorophyll biosynthetic process	1.70E-03
48	GO:1900057: positive regulation of leaf senescence	1.95E-03
49	GO:0051510: regulation of unidimensional cell growth	1.95E-03
50	GO:0048437: floral organ development	1.95E-03
51	GO:0008610: lipid biosynthetic process	2.26E-03
52	GO:0009826: unidimensional cell growth	2.48E-03
53	GO:0006526: arginine biosynthetic process	2.58E-03
54	GO:0032544: plastid translation	2.58E-03
55	GO:0009808: lignin metabolic process	2.58E-03
56	GO:0010093: specification of floral organ identity	2.58E-03
57	GO:0090305: nucleic acid phosphodiester bond hydrolysis	2.91E-03
58	GO:0010206: photosystem II repair	2.91E-03
59	GO:2000024: regulation of leaf development	2.91E-03
60	GO:0009060: aerobic respiration	2.91E-03
61	GO:0006779: porphyrin-containing compound biosynthetic process	3.26E-03
62	GO:1900865: chloroplast RNA modification	3.26E-03
63	GO:0006782: protoporphyrinogen IX biosynthetic process	3.62E-03
64	GO:0009750: response to fructose	4.00E-03
65	GO:0048229: gametophyte development	4.00E-03
66	GO:0010152: pollen maturation	4.39E-03
67	GO:0012501: programmed cell death	4.39E-03
68	GO:0005983: starch catabolic process	4.39E-03
69	GO:0009718: anthocyanin-containing compound biosynthetic process	4.79E-03
70	GO:0010075: regulation of meristem growth	4.79E-03
71	GO:0006094: gluconeogenesis	4.79E-03
72	GO:0009767: photosynthetic electron transport chain	4.79E-03
73	GO:0005986: sucrose biosynthetic process	4.79E-03
74	GO:0009934: regulation of meristem structural organization	5.20E-03
75	GO:0048768: root hair cell tip growth	5.20E-03
76	GO:0010143: cutin biosynthetic process	5.20E-03
77	GO:0009933: meristem structural organization	5.20E-03
78	GO:0006629: lipid metabolic process	5.60E-03
79	GO:0010030: positive regulation of seed germination	5.63E-03
80	GO:0010025: wax biosynthetic process	6.06E-03
81	GO:0006833: water transport	6.06E-03
82	GO:0009944: polarity specification of adaxial/abaxial axis	6.51E-03
83	GO:0007010: cytoskeleton organization	6.51E-03
84	GO:0006418: tRNA aminoacylation for protein translation	6.98E-03
85	GO:0009814: defense response, incompatible interaction	7.93E-03
86	GO:0016226: iron-sulfur cluster assembly	7.93E-03
87	GO:0009306: protein secretion	8.93E-03
88	GO:0048443: stamen development	8.93E-03
89	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	9.45E-03
90	GO:0034220: ion transmembrane transport	9.99E-03
91	GO:0048653: anther development	9.99E-03
92	GO:0042631: cellular response to water deprivation	9.99E-03
93	GO:0042335: cuticle development	9.99E-03
94	GO:0042391: regulation of membrane potential	9.99E-03
95	GO:0007623: circadian rhythm	1.01E-02
96	GO:0006520: cellular amino acid metabolic process	1.05E-02
97	GO:0010197: polar nucleus fusion	1.05E-02
98	GO:0009741: response to brassinosteroid	1.05E-02
99	GO:0010154: fruit development	1.05E-02
100	GO:0009646: response to absence of light	1.11E-02
101	GO:0009791: post-embryonic development	1.16E-02
102	GO:0016132: brassinosteroid biosynthetic process	1.22E-02
103	GO:0080156: mitochondrial mRNA modification	1.22E-02
104	GO:0071554: cell wall organization or biogenesis	1.22E-02
105	GO:0016032: viral process	1.28E-02
106	GO:0048235: pollen sperm cell differentiation	1.28E-02
107	GO:0071805: potassium ion transmembrane transport	1.46E-02
108	GO:0010027: thylakoid membrane organization	1.58E-02
109	GO:0006970: response to osmotic stress	1.69E-02
110	GO:0042128: nitrate assimilation	1.71E-02
111	GO:0016311: dephosphorylation	1.85E-02
112	GO:0048481: plant ovule development	1.91E-02
113	GO:0030244: cellulose biosynthetic process	1.91E-02
114	GO:0018298: protein-chromophore linkage	1.91E-02
115	GO:0009817: defense response to fungus, incompatible interaction	1.91E-02
116	GO:0010311: lateral root formation	1.98E-02
117	GO:0006499: N-terminal protein myristoylation	2.05E-02
118	GO:0009834: plant-type secondary cell wall biogenesis	2.05E-02
119	GO:0006811: ion transport	2.05E-02
120	GO:0007165: signal transduction	2.19E-02
121	GO:0015979: photosynthesis	2.22E-02
122	GO:0006839: mitochondrial transport	2.48E-02
123	GO:0009744: response to sucrose	2.71E-02
124	GO:0009644: response to high light intensity	2.87E-02
125	GO:0006855: drug transmembrane transport	3.03E-02
126	GO:0009664: plant-type cell wall organization	3.19E-02
127	GO:0006364: rRNA processing	3.35E-02
128	GO:0006813: potassium ion transport	3.35E-02
129	GO:0051603: proteolysis involved in cellular protein catabolic process	3.44E-02
130	GO:0006857: oligopeptide transport	3.52E-02
131	GO:0009909: regulation of flower development	3.60E-02
132	GO:0006096: glycolytic process	3.78E-02
133	GO:0006508: proteolysis	3.86E-02
134	GO:0009626: plant-type hypersensitive response	3.95E-02
135	GO:0009734: auxin-activated signaling pathway	4.03E-02
136	GO:0009620: response to fungus	4.04E-02
137	GO:0009742: brassinosteroid mediated signaling pathway	4.49E-02
138	GO:0006810: transport	4.53E-02
139	GO:0005975: carbohydrate metabolic process	4.72E-02

Rank	GO Term	Adjusted P value
1	GO:0038198: auxin receptor activity	0.00E+00
2	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
3	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
4	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
5	GO:0050614: delta24-sterol reductase activity	0.00E+00
6	GO:0005222: intracellular cAMP activated cation channel activity	0.00E+00
7	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
8	GO:0008987: quinolinate synthetase A activity	0.00E+00
9	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
10	GO:0004674: protein serine/threonine kinase activity	7.63E-05
11	GO:0005221: intracellular cyclic nucleotide activated cation channel activity	1.23E-04
12	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	1.23E-04
13	GO:0090422: thiamine pyrophosphate transporter activity	1.23E-04
14	GO:0003867: 4-aminobutyrate transaminase activity	1.23E-04
15	GO:0003839: gamma-glutamylcyclotransferase activity	2.86E-04
16	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	2.86E-04
17	GO:0000822: inositol hexakisphosphate binding	2.86E-04
18	GO:0004075: biotin carboxylase activity	4.72E-04
19	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	4.72E-04
20	GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity	4.72E-04
21	GO:0002161: aminoacyl-tRNA editing activity	4.72E-04
22	GO:0001872: (1->3)-beta-D-glucan binding	6.76E-04
23	GO:0010011: auxin binding	8.97E-04
24	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	8.97E-04
25	GO:0016301: kinase activity	1.12E-03
26	GO:0003989: acetyl-CoA carboxylase activity	1.13E-03
27	GO:0017137: Rab GTPase binding	1.13E-03
28	GO:2001070: starch binding	1.39E-03
29	GO:0042578: phosphoric ester hydrolase activity	1.39E-03
30	GO:0005524: ATP binding	1.54E-03
31	GO:0004559: alpha-mannosidase activity	1.66E-03
32	GO:0005242: inward rectifier potassium channel activity	1.66E-03
33	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.66E-03
34	GO:0005261: cation channel activity	1.66E-03
35	GO:0016787: hydrolase activity	1.89E-03
36	GO:0005096: GTPase activator activity	1.98E-03
37	GO:0008047: enzyme activator activity	3.62E-03
38	GO:0000049: tRNA binding	4.39E-03
39	GO:0008081: phosphoric diester hydrolase activity	4.79E-03
40	GO:0005262: calcium channel activity	4.79E-03
41	GO:0004565: beta-galactosidase activity	4.79E-03
42	GO:0008266: poly(U) RNA binding	5.20E-03
43	GO:0004190: aspartic-type endopeptidase activity	5.63E-03
44	GO:0030552: cAMP binding	5.63E-03
45	GO:0030553: cGMP binding	5.63E-03
46	GO:0005528: FK506 binding	6.51E-03
47	GO:0005216: ion channel activity	6.98E-03
48	GO:0015079: potassium ion transmembrane transporter activity	6.98E-03
49	GO:0033612: receptor serine/threonine kinase binding	7.45E-03
50	GO:0019706: protein-cysteine S-palmitoyltransferase activity	7.45E-03
51	GO:0016829: lyase activity	7.90E-03
52	GO:0004252: serine-type endopeptidase activity	8.10E-03
53	GO:0030570: pectate lyase activity	8.43E-03
54	GO:0022891: substrate-specific transmembrane transporter activity	8.43E-03
55	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	9.39E-03
56	GO:0004812: aminoacyl-tRNA ligase activity	9.45E-03
57	GO:0030551: cyclic nucleotide binding	9.99E-03
58	GO:0050662: coenzyme binding	1.11E-02
59	GO:0004518: nuclease activity	1.28E-02
60	GO:0004672: protein kinase activity	1.30E-02
61	GO:0016413: O-acetyltransferase activity	1.52E-02
62	GO:0015250: water channel activity	1.58E-02
63	GO:0016168: chlorophyll binding	1.65E-02
64	GO:0030247: polysaccharide binding	1.78E-02
65	GO:0008236: serine-type peptidase activity	1.85E-02
66	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.91E-02
67	GO:0005516: calmodulin binding	1.95E-02
68	GO:0015238: drug transmembrane transporter activity	1.98E-02
69	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.12E-02
70	GO:0004871: signal transducer activity	2.44E-02
71	GO:0051539: 4 iron, 4 sulfur cluster binding	2.48E-02
72	GO:0004185: serine-type carboxypeptidase activity	2.71E-02
73	GO:0035091: phosphatidylinositol binding	2.87E-02
74	GO:0015293: symporter activity	2.95E-02
75	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.03E-02
76	GO:0051287: NAD binding	3.11E-02
77	GO:0003824: catalytic activity	3.17E-02
78	GO:0005215: transporter activity	3.20E-02
79	GO:0016298: lipase activity	3.44E-02
80	GO:0031625: ubiquitin protein ligase binding	3.60E-02
81	GO:0004650: polygalacturonase activity	4.04E-02
82	GO:0046872: metal ion binding	4.76E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	1.99E-07
2	GO:0009543: chloroplast thylakoid lumen	1.18E-04
3	GO:0009344: nitrite reductase complex [NAD(P)H]	1.23E-04
4	GO:0009507: chloroplast	4.69E-04
5	GO:0009535: chloroplast thylakoid membrane	5.69E-04
6	GO:0019005: SCF ubiquitin ligase complex	1.89E-03
7	GO:0009533: chloroplast stromal thylakoid	1.95E-03
8	GO:0046658: anchored component of plasma membrane	2.14E-03
9	GO:0009505: plant-type cell wall	2.63E-03
10	GO:0008180: COP9 signalosome	2.91E-03
11	GO:0016021: integral component of membrane	3.16E-03
12	GO:0030659: cytoplasmic vesicle membrane	5.20E-03
13	GO:0030095: chloroplast photosystem II	5.20E-03
14	GO:0009570: chloroplast stroma	5.92E-03
15	GO:0009654: photosystem II oxygen evolving complex	6.98E-03
16	GO:0009523: photosystem II	1.16E-02
17	GO:0019898: extrinsic component of membrane	1.16E-02
18	GO:0009579: thylakoid	1.46E-02
19	GO:0009534: chloroplast thylakoid	1.47E-02
20	GO:0000151: ubiquitin ligase complex	1.91E-02
21	GO:0031225: anchored component of membrane	2.04E-02
22	GO:0031977: thylakoid lumen	2.56E-02
23	GO:0005773: vacuole	3.17E-02
24	GO:0000502: proteasome complex	3.35E-02
25	GO:0005887: integral component of plasma membrane	3.88E-02
26	GO:0012505: endomembrane system	4.22E-02
27	GO:0005576: extracellular region	4.39E-02
28	GO:0010287: plastoglobule	4.86E-02
29	GO:0048046: apoplast	4.91E-02