co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G65540

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0039694: viral RNA genome replication	0.00E+00
2	GO:0002376: immune system process	0.00E+00
3	GO:0030149: sphingolipid catabolic process	0.00E+00
4	GO:0072722: response to amitrole	0.00E+00
5	GO:0006592: ornithine biosynthetic process	0.00E+00
6	GO:0046686: response to cadmium ion	1.14E-10
7	GO:0006099: tricarboxylic acid cycle	1.43E-10
8	GO:0006102: isocitrate metabolic process	2.15E-10
9	GO:0034976: response to endoplasmic reticulum stress	2.74E-10
10	GO:0006457: protein folding	6.83E-09
11	GO:0045454: cell redox homeostasis	9.63E-08
12	GO:0006101: citrate metabolic process	2.61E-06
13	GO:0042742: defense response to bacterium	5.88E-06
14	GO:0030968: endoplasmic reticulum unfolded protein response	6.34E-06
15	GO:0009697: salicylic acid biosynthetic process	6.26E-05
16	GO:0006097: glyoxylate cycle	6.26E-05
17	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	1.27E-04
18	GO:0009617: response to bacterium	1.93E-04
19	GO:0043687: post-translational protein modification	2.36E-04
20	GO:0042964: thioredoxin reduction	2.36E-04
21	GO:0046244: salicylic acid catabolic process	2.36E-04
22	GO:0050691: regulation of defense response to virus by host	2.36E-04
23	GO:0006390: transcription from mitochondrial promoter	2.36E-04
24	GO:0034975: protein folding in endoplasmic reticulum	2.36E-04
25	GO:0035266: meristem growth	2.36E-04
26	GO:0007292: female gamete generation	2.36E-04
27	GO:0051938: L-glutamate import	2.36E-04
28	GO:1990641: response to iron ion starvation	2.36E-04
29	GO:0051788: response to misfolded protein	5.24E-04
30	GO:0019752: carboxylic acid metabolic process	5.24E-04
31	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	5.24E-04
32	GO:0008535: respiratory chain complex IV assembly	5.24E-04
33	GO:0043091: L-arginine import	5.24E-04
34	GO:0010043: response to zinc ion	6.81E-04
35	GO:0006979: response to oxidative stress	7.57E-04
36	GO:0090351: seedling development	8.34E-04
37	GO:0010498: proteasomal protein catabolic process	8.52E-04
38	GO:0002230: positive regulation of defense response to virus by host	8.52E-04
39	GO:0009062: fatty acid catabolic process	8.52E-04
40	GO:0010272: response to silver ion	8.52E-04
41	GO:0045039: protein import into mitochondrial inner membrane	8.52E-04
42	GO:0060968: regulation of gene silencing	8.52E-04
43	GO:0010150: leaf senescence	8.66E-04
44	GO:0000162: tryptophan biosynthetic process	9.25E-04
45	GO:0033014: tetrapyrrole biosynthetic process	1.21E-03
46	GO:1902290: positive regulation of defense response to oomycetes	1.21E-03
47	GO:0010116: positive regulation of abscisic acid biosynthetic process	1.21E-03
48	GO:0002239: response to oomycetes	1.21E-03
49	GO:0072334: UDP-galactose transmembrane transport	1.21E-03
50	GO:0016998: cell wall macromolecule catabolic process	1.23E-03
51	GO:0030433: ubiquitin-dependent ERAD pathway	1.35E-03
52	GO:0031348: negative regulation of defense response	1.35E-03
53	GO:0009306: protein secretion	1.59E-03
54	GO:0051205: protein insertion into membrane	1.62E-03
55	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	1.62E-03
56	GO:0000304: response to singlet oxygen	2.07E-03
57	GO:0018279: protein N-linked glycosylation via asparagine	2.07E-03
58	GO:0046283: anthocyanin-containing compound metabolic process	2.07E-03
59	GO:0006564: L-serine biosynthetic process	2.07E-03
60	GO:0006461: protein complex assembly	2.07E-03
61	GO:0009553: embryo sac development	2.29E-03
62	GO:0047484: regulation of response to osmotic stress	2.55E-03
63	GO:0006014: D-ribose metabolic process	2.55E-03
64	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	2.55E-03
65	GO:0006121: mitochondrial electron transport, succinate to ubiquinone	2.55E-03
66	GO:0048827: phyllome development	2.55E-03
67	GO:0048232: male gamete generation	2.55E-03
68	GO:0043248: proteasome assembly	2.55E-03
69	GO:0042372: phylloquinone biosynthetic process	3.06E-03
70	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	3.06E-03
71	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	3.61E-03
72	GO:0042773: ATP synthesis coupled electron transport	3.61E-03
73	GO:1900057: positive regulation of leaf senescence	3.61E-03
74	GO:1902074: response to salt	3.61E-03
75	GO:0009651: response to salt stress	3.75E-03
76	GO:0009627: systemic acquired resistance	3.97E-03
77	GO:0009751: response to salicylic acid	4.10E-03
78	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	4.19E-03
79	GO:0009819: drought recovery	4.19E-03
80	GO:0030091: protein repair	4.19E-03
81	GO:0006605: protein targeting	4.19E-03
82	GO:0010078: maintenance of root meristem identity	4.19E-03
83	GO:0019430: removal of superoxide radicals	4.79E-03
84	GO:0006952: defense response	4.79E-03
85	GO:0006526: arginine biosynthetic process	4.79E-03
86	GO:0010204: defense response signaling pathway, resistance gene-independent	4.79E-03
87	GO:0009699: phenylpropanoid biosynthetic process	4.79E-03
88	GO:0006499: N-terminal protein myristoylation	5.11E-03
89	GO:0009407: toxin catabolic process	5.11E-03
90	GO:0007568: aging	5.36E-03
91	GO:0006783: heme biosynthetic process	5.43E-03
92	GO:0009060: aerobic respiration	5.43E-03
93	GO:0015780: nucleotide-sugar transport	5.43E-03
94	GO:0098656: anion transmembrane transport	5.43E-03
95	GO:0055114: oxidation-reduction process	5.77E-03
96	GO:0045087: innate immune response	5.87E-03
97	GO:1900426: positive regulation of defense response to bacterium	6.09E-03
98	GO:0010205: photoinhibition	6.09E-03
99	GO:0043067: regulation of programmed cell death	6.09E-03
100	GO:0006032: chitin catabolic process	6.78E-03
101	GO:0048829: root cap development	6.78E-03
102	GO:0009682: induced systemic resistance	7.50E-03
103	GO:0009807: lignan biosynthetic process	7.50E-03
104	GO:0000272: polysaccharide catabolic process	7.50E-03
105	GO:0016485: protein processing	7.50E-03
106	GO:0010015: root morphogenesis	7.50E-03
107	GO:0006820: anion transport	8.25E-03
108	GO:0002213: defense response to insect	8.25E-03
109	GO:0006790: sulfur compound metabolic process	8.25E-03
110	GO:0055046: microgametogenesis	9.02E-03
111	GO:0010075: regulation of meristem growth	9.02E-03
112	GO:0009846: pollen germination	9.52E-03
113	GO:0002237: response to molecule of bacterial origin	9.82E-03
114	GO:0009933: meristem structural organization	9.82E-03
115	GO:0009934: regulation of meristem structural organization	9.82E-03
116	GO:0006486: protein glycosylation	1.02E-02
117	GO:0046854: phosphatidylinositol phosphorylation	1.06E-02
118	GO:0006468: protein phosphorylation	1.10E-02
119	GO:0006096: glycolytic process	1.21E-02
120	GO:0009863: salicylic acid mediated signaling pathway	1.24E-02
121	GO:2000377: regulation of reactive oxygen species metabolic process	1.24E-02
122	GO:0006487: protein N-linked glycosylation	1.24E-02
123	GO:0048316: seed development	1.25E-02
124	GO:0003333: amino acid transmembrane transport	1.42E-02
125	GO:0009409: response to cold	1.50E-02
126	GO:0019748: secondary metabolic process	1.51E-02
127	GO:0006511: ubiquitin-dependent protein catabolic process	1.59E-02
128	GO:0009561: megagametogenesis	1.70E-02
129	GO:0009408: response to heat	1.79E-02
130	GO:0008033: tRNA processing	1.91E-02
131	GO:0010501: RNA secondary structure unwinding	1.91E-02
132	GO:0000413: protein peptidyl-prolyl isomerization	1.91E-02
133	GO:0010118: stomatal movement	1.91E-02
134	GO:0006520: cellular amino acid metabolic process	2.01E-02
135	GO:0010197: polar nucleus fusion	2.01E-02
136	GO:0048868: pollen tube development	2.01E-02
137	GO:0019252: starch biosynthetic process	2.23E-02
138	GO:0002229: defense response to oomycetes	2.34E-02
139	GO:0000302: response to reactive oxygen species	2.34E-02
140	GO:0006635: fatty acid beta-oxidation	2.34E-02
141	GO:0080156: mitochondrial mRNA modification	2.34E-02
142	GO:0006464: cellular protein modification process	2.68E-02
143	GO:0009567: double fertilization forming a zygote and endosperm	2.68E-02
144	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.83E-02
145	GO:0009615: response to virus	3.04E-02
146	GO:0016126: sterol biosynthetic process	3.04E-02
147	GO:0009607: response to biotic stimulus	3.16E-02
148	GO:0015995: chlorophyll biosynthetic process	3.41E-02
149	GO:0016049: cell growth	3.54E-02
150	GO:0016311: dephosphorylation	3.54E-02
151	GO:0009817: defense response to fungus, incompatible interaction	3.67E-02
152	GO:0048481: plant ovule development	3.67E-02
153	GO:0009555: pollen development	3.67E-02
154	GO:0008219: cell death	3.67E-02
155	GO:0010311: lateral root formation	3.80E-02
156	GO:0016310: phosphorylation	4.06E-02
157	GO:0015031: protein transport	4.07E-02
158	GO:0009860: pollen tube growth	4.20E-02
159	GO:0016051: carbohydrate biosynthetic process	4.34E-02
160	GO:0009853: photorespiration	4.34E-02
161	GO:0010200: response to chitin	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0004631: phosphomevalonate kinase activity	0.00E+00
2	GO:0050220: prostaglandin-E synthase activity	0.00E+00
3	GO:0003980: UDP-glucose:glycoprotein glucosyltransferase activity	0.00E+00
4	GO:0016312: inositol bisphosphate phosphatase activity	0.00E+00
5	GO:0015165: pyrimidine nucleotide-sugar transmembrane transporter activity	0.00E+00
6	GO:0008777: acetylornithine deacetylase activity	0.00E+00
7	GO:0050269: coniferyl-aldehyde dehydrogenase activity	0.00E+00
8	GO:0008117: sphinganine-1-phosphate aldolase activity	0.00E+00
9	GO:0003756: protein disulfide isomerase activity	2.00E-09
10	GO:0004449: isocitrate dehydrogenase (NAD+) activity	7.78E-08
11	GO:0004775: succinate-CoA ligase (ADP-forming) activity	2.61E-06
12	GO:0004776: succinate-CoA ligase (GDP-forming) activity	2.61E-06
13	GO:0003994: aconitate hydratase activity	2.61E-06
14	GO:0051539: 4 iron, 4 sulfur cluster binding	6.24E-06
15	GO:0005507: copper ion binding	1.05E-05
16	GO:0005460: UDP-glucose transmembrane transporter activity	2.15E-05
17	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	6.26E-05
18	GO:0005459: UDP-galactose transmembrane transporter activity	6.26E-05
19	GO:0004298: threonine-type endopeptidase activity	8.85E-05
20	GO:0004048: anthranilate phosphoribosyltransferase activity	2.36E-04
21	GO:0004591: oxoglutarate dehydrogenase (succinyl-transferring) activity	2.36E-04
22	GO:0004325: ferrochelatase activity	2.36E-04
23	GO:0048037: cofactor binding	2.36E-04
24	GO:0008909: isochorismate synthase activity	2.36E-04
25	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	2.36E-04
26	GO:0004648: O-phospho-L-serine:2-oxoglutarate aminotransferase activity	2.36E-04
27	GO:0008809: carnitine racemase activity	2.36E-04
28	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.36E-04
29	GO:0051082: unfolded protein binding	3.73E-04
30	GO:0030955: potassium ion binding	3.78E-04
31	GO:0004743: pyruvate kinase activity	3.78E-04
32	GO:0005524: ATP binding	3.94E-04
33	GO:0008233: peptidase activity	4.61E-04
34	GO:0016301: kinase activity	6.85E-04
35	GO:0004148: dihydrolipoyl dehydrogenase activity	8.52E-04
36	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	8.52E-04
37	GO:0000030: mannosyltransferase activity	8.52E-04
38	GO:0015181: arginine transmembrane transporter activity	1.21E-03
39	GO:0004165: dodecenoyl-CoA delta-isomerase activity	1.21E-03
40	GO:0015189: L-lysine transmembrane transporter activity	1.21E-03
41	GO:0005313: L-glutamate transmembrane transporter activity	1.62E-03
42	GO:0004576: oligosaccharyl transferase activity	1.62E-03
43	GO:0005452: inorganic anion exchanger activity	2.07E-03
44	GO:0000104: succinate dehydrogenase activity	2.07E-03
45	GO:0005496: steroid binding	2.07E-03
46	GO:0015301: anion:anion antiporter activity	2.07E-03
47	GO:0010181: FMN binding	2.15E-03
48	GO:0005509: calcium ion binding	2.22E-03
49	GO:0015035: protein disulfide oxidoreductase activity	2.47E-03
50	GO:0008137: NADH dehydrogenase (ubiquinone) activity	2.47E-03
51	GO:0004029: aldehyde dehydrogenase (NAD) activity	2.55E-03
52	GO:0036402: proteasome-activating ATPase activity	2.55E-03
53	GO:0030976: thiamine pyrophosphate binding	2.55E-03
54	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.06E-03
55	GO:0004747: ribokinase activity	3.06E-03
56	GO:0004602: glutathione peroxidase activity	3.06E-03
57	GO:0004656: procollagen-proline 4-dioxygenase activity	3.06E-03
58	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	3.06E-03
59	GO:0051920: peroxiredoxin activity	3.06E-03
60	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.06E-03
61	GO:0004674: protein serine/threonine kinase activity	3.54E-03
62	GO:0008320: protein transmembrane transporter activity	3.61E-03
63	GO:0043295: glutathione binding	3.61E-03
64	GO:0016831: carboxy-lyase activity	3.61E-03
65	GO:0004004: ATP-dependent RNA helicase activity	4.19E-03
66	GO:0008865: fructokinase activity	4.19E-03
67	GO:0015288: porin activity	4.19E-03
68	GO:0016209: antioxidant activity	4.19E-03
69	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.64E-03
70	GO:0009055: electron carrier activity	4.66E-03
71	GO:0008308: voltage-gated anion channel activity	4.79E-03
72	GO:0008135: translation factor activity, RNA binding	4.79E-03
73	GO:0050897: cobalt ion binding	5.36E-03
74	GO:0003746: translation elongation factor activity	5.87E-03
75	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	5.87E-03
76	GO:0015174: basic amino acid transmembrane transporter activity	6.09E-03
77	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	6.09E-03
78	GO:0004568: chitinase activity	6.78E-03
79	GO:0008171: O-methyltransferase activity	6.78E-03
80	GO:0004364: glutathione transferase activity	7.27E-03
81	GO:0004129: cytochrome-c oxidase activity	7.50E-03
82	GO:0008559: xenobiotic-transporting ATPase activity	7.50E-03
83	GO:0000287: magnesium ion binding	8.11E-03
84	GO:0004022: alcohol dehydrogenase (NAD) activity	9.02E-03
85	GO:0017025: TBP-class protein binding	1.06E-02
86	GO:0008061: chitin binding	1.06E-02
87	GO:0004190: aspartic-type endopeptidase activity	1.06E-02
88	GO:0051536: iron-sulfur cluster binding	1.24E-02
89	GO:0031418: L-ascorbic acid binding	1.24E-02
90	GO:0003954: NADH dehydrogenase activity	1.24E-02
91	GO:0004386: helicase activity	1.59E-02
92	GO:0004791: thioredoxin-disulfide reductase activity	2.12E-02
93	GO:0016853: isomerase activity	2.12E-02
94	GO:0048038: quinone binding	2.34E-02
95	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.56E-02
96	GO:0008237: metallopeptidase activity	2.80E-02
97	GO:0051213: dioxygenase activity	3.04E-02
98	GO:0004806: triglyceride lipase activity	3.41E-02
99	GO:0030247: polysaccharide binding	3.41E-02
100	GO:0004683: calmodulin-dependent protein kinase activity	3.41E-02
101	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.54E-02
102	GO:0015238: drug transmembrane transporter activity	3.80E-02
103	GO:0004222: metalloendopeptidase activity	3.93E-02
104	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.07E-02
105	GO:0016491: oxidoreductase activity	4.28E-02
106	GO:0003697: single-stranded DNA binding	4.34E-02
107	GO:0050660: flavin adenine dinucleotide binding	4.51E-02

Rank	GO Term	Adjusted P value
1	GO:0000327: lytic vacuole within protein storage vacuole	0.00E+00
2	GO:0019034: viral replication complex	0.00E+00
3	GO:0005783: endoplasmic reticulum	1.17E-16
4	GO:0005788: endoplasmic reticulum lumen	3.88E-15
5	GO:0005774: vacuolar membrane	2.17E-07
6	GO:0005789: endoplasmic reticulum membrane	3.24E-05
7	GO:0008250: oligosaccharyltransferase complex	6.26E-05
8	GO:0005839: proteasome core complex	8.85E-05
9	GO:0005886: plasma membrane	1.32E-04
10	GO:0009507: chloroplast	1.72E-04
11	GO:0000502: proteasome complex	2.09E-04
12	GO:0045252: oxoglutarate dehydrogenase complex	2.36E-04
13	GO:0034245: mitochondrial DNA-directed RNA polymerase complex	2.36E-04
14	GO:0019773: proteasome core complex, alpha-subunit complex	2.63E-04
15	GO:0005739: mitochondrion	4.41E-04
16	GO:0030134: ER to Golgi transport vesicle	5.24E-04
17	GO:0005829: cytosol	5.68E-04
18	GO:0030176: integral component of endoplasmic reticulum membrane	8.34E-04
19	GO:0009536: plastid	1.16E-03
20	GO:0009505: plant-type cell wall	1.21E-03
21	GO:0005741: mitochondrial outer membrane	1.23E-03
22	GO:0016020: membrane	1.47E-03
23	GO:0030660: Golgi-associated vesicle membrane	1.62E-03
24	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	1.62E-03
25	GO:0005747: mitochondrial respiratory chain complex I	1.96E-03
26	GO:0005746: mitochondrial respiratory chain	2.07E-03
27	GO:0016592: mediator complex	2.63E-03
28	GO:0005762: mitochondrial large ribosomal subunit	3.06E-03
29	GO:0005801: cis-Golgi network	3.06E-03
30	GO:0031597: cytosolic proteasome complex	3.06E-03
31	GO:0030173: integral component of Golgi membrane	3.06E-03
32	GO:0031595: nuclear proteasome complex	3.61E-03
33	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	4.19E-03
34	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	4.19E-03
35	GO:0005759: mitochondrial matrix	4.23E-03
36	GO:0005773: vacuole	4.28E-03
37	GO:0000326: protein storage vacuole	4.79E-03
38	GO:0046930: pore complex	4.79E-03
39	GO:0016021: integral component of membrane	5.49E-03
40	GO:0008540: proteasome regulatory particle, base subcomplex	6.09E-03
41	GO:0005765: lysosomal membrane	7.50E-03
42	GO:0005750: mitochondrial respiratory chain complex III	9.82E-03
43	GO:0031969: chloroplast membrane	1.09E-02
44	GO:0043234: protein complex	1.15E-02
45	GO:0005758: mitochondrial intermembrane space	1.24E-02
46	GO:0045271: respiratory chain complex I	1.32E-02
47	GO:0005743: mitochondrial inner membrane	1.63E-02
48	GO:0048046: apoplast	3.15E-02
49	GO:0000325: plant-type vacuole	4.07E-02
50	GO:0005819: spindle	4.62E-02