Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G65520

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0017186: peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase0.00E+00
2GO:0042430: indole-containing compound metabolic process0.00E+00
3GO:0002376: immune system process0.00E+00
4GO:2000541: positive regulation of protein geranylgeranylation0.00E+00
5GO:0006182: cGMP biosynthetic process0.00E+00
6GO:0006468: protein phosphorylation4.78E-09
7GO:0010150: leaf senescence9.30E-07
8GO:0006952: defense response9.48E-07
9GO:0042742: defense response to bacterium4.05E-06
10GO:0046686: response to cadmium ion6.45E-06
11GO:0031349: positive regulation of defense response6.85E-06
12GO:0034976: response to endoplasmic reticulum stress7.28E-06
13GO:0006102: isocitrate metabolic process1.53E-05
14GO:0010120: camalexin biosynthetic process2.19E-05
15GO:0006099: tricarboxylic acid cycle3.04E-05
16GO:0072334: UDP-galactose transmembrane transport5.22E-05
17GO:0006457: protein folding1.05E-04
18GO:0055114: oxidation-reduction process1.12E-04
19GO:0009697: salicylic acid biosynthetic process1.43E-04
20GO:0009617: response to bacterium1.45E-04
21GO:0010942: positive regulation of cell death2.05E-04
22GO:0009751: response to salicylic acid2.09E-04
23GO:1900056: negative regulation of leaf senescence3.58E-04
24GO:0010726: positive regulation of hydrogen peroxide metabolic process3.92E-04
25GO:0010421: hydrogen peroxide-mediated programmed cell death3.92E-04
26GO:1990022: RNA polymerase III complex localization to nucleus3.92E-04
27GO:0009700: indole phytoalexin biosynthetic process3.92E-04
28GO:0044376: RNA polymerase II complex import to nucleus3.92E-04
29GO:0050691: regulation of defense response to virus by host3.92E-04
30GO:0060862: negative regulation of floral organ abscission3.92E-04
31GO:0042964: thioredoxin reduction3.92E-04
32GO:0046244: salicylic acid catabolic process3.92E-04
33GO:0034975: protein folding in endoplasmic reticulum3.92E-04
34GO:1990641: response to iron ion starvation3.92E-04
35GO:0006979: response to oxidative stress4.06E-04
36GO:0010200: response to chitin4.45E-04
37GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline4.48E-04
38GO:0030968: endoplasmic reticulum unfolded protein response5.48E-04
39GO:0045454: cell redox homeostasis5.99E-04
40GO:0000302: response to reactive oxygen species6.43E-04
41GO:0006101: citrate metabolic process8.49E-04
42GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine8.49E-04
43GO:0008535: respiratory chain complex IV assembly8.49E-04
44GO:0045905: positive regulation of translational termination8.49E-04
45GO:0045901: positive regulation of translational elongation8.49E-04
46GO:0080151: positive regulation of salicylic acid mediated signaling pathway8.49E-04
47GO:0080185: effector dependent induction by symbiont of host immune response8.49E-04
48GO:0006452: translational frameshifting8.49E-04
49GO:0009620: response to fungus1.01E-03
50GO:0009816: defense response to bacterium, incompatible interaction1.10E-03
51GO:0009627: systemic acquired resistance1.17E-03
52GO:0012501: programmed cell death1.19E-03
53GO:1900140: regulation of seedling development1.38E-03
54GO:0055074: calcium ion homeostasis1.38E-03
55GO:0009399: nitrogen fixation1.99E-03
56GO:0015696: ammonium transport1.99E-03
57GO:0001676: long-chain fatty acid metabolic process1.99E-03
58GO:0000187: activation of MAPK activity1.99E-03
59GO:0010116: positive regulation of abscisic acid biosynthetic process1.99E-03
60GO:0048194: Golgi vesicle budding1.99E-03
61GO:0002239: response to oomycetes1.99E-03
62GO:0042542: response to hydrogen peroxide2.53E-03
63GO:0016998: cell wall macromolecule catabolic process2.54E-03
64GO:0072488: ammonium transmembrane transport2.67E-03
65GO:2000038: regulation of stomatal complex development2.67E-03
66GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway2.67E-03
67GO:0006542: glutamine biosynthetic process2.67E-03
68GO:0060548: negative regulation of cell death2.67E-03
69GO:0046345: abscisic acid catabolic process2.67E-03
70GO:0009814: defense response, incompatible interaction2.78E-03
71GO:0031348: negative regulation of defense response2.78E-03
72GO:0009625: response to insect3.04E-03
73GO:0007166: cell surface receptor signaling pathway3.27E-03
74GO:0009306: protein secretion3.30E-03
75GO:0000304: response to singlet oxygen3.42E-03
76GO:0030041: actin filament polymerization3.42E-03
77GO:0046283: anthocyanin-containing compound metabolic process3.42E-03
78GO:0006097: glyoxylate cycle3.42E-03
79GO:0045116: protein neddylation3.42E-03
80GO:0018344: protein geranylgeranylation3.42E-03
81GO:0010225: response to UV-C3.42E-03
82GO:1900425: negative regulation of defense response to bacterium4.23E-03
83GO:0018258: protein O-linked glycosylation via hydroxyproline4.23E-03
84GO:0006014: D-ribose metabolic process4.23E-03
85GO:0006561: proline biosynthetic process4.23E-03
86GO:0010405: arabinogalactan protein metabolic process4.23E-03
87GO:0010256: endomembrane system organization4.23E-03
88GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response5.09E-03
89GO:0042372: phylloquinone biosynthetic process5.09E-03
90GO:2000037: regulation of stomatal complex patterning5.09E-03
91GO:0002229: defense response to oomycetes5.15E-03
92GO:0010193: response to ozone5.15E-03
93GO:0030163: protein catabolic process5.87E-03
94GO:1902074: response to salt6.02E-03
95GO:0043090: amino acid import6.02E-03
96GO:0050832: defense response to fungus6.65E-03
97GO:0030091: protein repair7.00E-03
98GO:0009787: regulation of abscisic acid-activated signaling pathway7.00E-03
99GO:0009819: drought recovery7.00E-03
100GO:0030162: regulation of proteolysis7.00E-03
101GO:0006605: protein targeting7.00E-03
102GO:1900150: regulation of defense response to fungus7.00E-03
103GO:0006875: cellular metal ion homeostasis7.00E-03
104GO:0007165: signal transduction7.17E-03
105GO:0009737: response to abscisic acid7.55E-03
106GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway7.58E-03
107GO:0019430: removal of superoxide radicals8.03E-03
108GO:0010204: defense response signaling pathway, resistance gene-independent8.03E-03
109GO:0043562: cellular response to nitrogen levels8.03E-03
110GO:0009699: phenylpropanoid biosynthetic process8.03E-03
111GO:0006075: (1->3)-beta-D-glucan biosynthetic process8.03E-03
112GO:0044550: secondary metabolite biosynthetic process8.18E-03
113GO:0042128: nitrate assimilation8.34E-03
114GO:0009821: alkaloid biosynthetic process9.12E-03
115GO:0010112: regulation of systemic acquired resistance9.12E-03
116GO:0046685: response to arsenic-containing substance9.12E-03
117GO:0009817: defense response to fungus, incompatible interaction9.76E-03
118GO:0008219: cell death9.76E-03
119GO:0009790: embryo development9.93E-03
120GO:0048354: mucilage biosynthetic process involved in seed coat development1.03E-02
121GO:0043067: regulation of programmed cell death1.03E-02
122GO:0030042: actin filament depolymerization1.03E-02
123GO:0007064: mitotic sister chromatid cohesion1.14E-02
124GO:0006032: chitin catabolic process1.14E-02
125GO:0009688: abscisic acid biosynthetic process1.14E-02
126GO:0006865: amino acid transport1.18E-02
127GO:0045087: innate immune response1.24E-02
128GO:0009682: induced systemic resistance1.27E-02
129GO:0015706: nitrate transport1.40E-02
130GO:0002213: defense response to insect1.40E-02
131GO:0006790: sulfur compound metabolic process1.40E-02
132GO:0010229: inflorescence development1.53E-02
133GO:0009718: anthocyanin-containing compound biosynthetic process1.53E-02
134GO:0010075: regulation of meristem growth1.53E-02
135GO:0002237: response to molecule of bacterial origin1.66E-02
136GO:0009934: regulation of meristem structural organization1.66E-02
137GO:0015031: protein transport1.79E-02
138GO:0042343: indole glucosinolate metabolic process1.81E-02
139GO:0010167: response to nitrate1.81E-02
140GO:0046688: response to copper ion1.81E-02
141GO:0070588: calcium ion transmembrane transport1.81E-02
142GO:0046854: phosphatidylinositol phosphorylation1.81E-02
143GO:0031347: regulation of defense response1.94E-02
144GO:0000162: tryptophan biosynthetic process1.95E-02
145GO:0009846: pollen germination2.02E-02
146GO:0080147: root hair cell development2.10E-02
147GO:0009863: salicylic acid mediated signaling pathway2.10E-02
148GO:2000377: regulation of reactive oxygen species metabolic process2.10E-02
149GO:0005992: trehalose biosynthetic process2.10E-02
150GO:0006486: protein glycosylation2.16E-02
151GO:0006874: cellular calcium ion homeostasis2.25E-02
152GO:0006825: copper ion transport2.25E-02
153GO:0006970: response to osmotic stress2.35E-02
154GO:0003333: amino acid transmembrane transport2.41E-02
155GO:0098542: defense response to other organism2.41E-02
156GO:0007131: reciprocal meiotic recombination2.57E-02
157GO:2000022: regulation of jasmonic acid mediated signaling pathway2.57E-02
158GO:0030433: ubiquitin-dependent ERAD pathway2.57E-02
159GO:0071456: cellular response to hypoxia2.57E-02
160GO:0019748: secondary metabolic process2.57E-02
161GO:0048316: seed development2.64E-02
162GO:0009626: plant-type hypersensitive response2.73E-02
163GO:0010227: floral organ abscission2.73E-02
164GO:0006012: galactose metabolic process2.73E-02
165GO:0010089: xylem development2.90E-02
166GO:0010584: pollen exine formation2.90E-02
167GO:0009553: embryo sac development2.99E-02
168GO:0009414: response to water deprivation3.05E-02
169GO:0009624: response to nematode3.08E-02
170GO:0008033: tRNA processing3.25E-02
171GO:0000413: protein peptidyl-prolyl isomerization3.25E-02
172GO:0010118: stomatal movement3.25E-02
173GO:0042631: cellular response to water deprivation3.25E-02
174GO:0008360: regulation of cell shape3.42E-02
175GO:0010197: polar nucleus fusion3.42E-02
176GO:0048868: pollen tube development3.42E-02
177GO:0009646: response to absence of light3.61E-02
178GO:0006886: intracellular protein transport3.64E-02
179GO:0006623: protein targeting to vacuole3.79E-02
180GO:0010183: pollen tube guidance3.79E-02
181GO:0019252: starch biosynthetic process3.79E-02
182GO:0009851: auxin biosynthetic process3.79E-02
183GO:0080156: mitochondrial mRNA modification3.98E-02
184GO:0007264: small GTPase mediated signal transduction4.17E-02
185GO:0032259: methylation4.30E-02
186GO:0009408: response to heat4.53E-02
187GO:0010252: auxin homeostasis4.56E-02
188GO:0006464: cellular protein modification process4.56E-02
189GO:0009567: double fertilization forming a zygote and endosperm4.56E-02
RankGO TermAdjusted P value
1GO:0004631: phosphomevalonate kinase activity0.00E+00
2GO:0047720: indoleacetaldoxime dehydratase activity0.00E+00
3GO:0016312: inositol bisphosphate phosphatase activity0.00E+00
4GO:0010298: dihydrocamalexic acid decarboxylase activity0.00E+00
5GO:0005212: structural constituent of eye lens0.00E+00
6GO:0005092: GDP-dissociation inhibitor activity0.00E+00
7GO:0016603: glutaminyl-peptide cyclotransferase activity0.00E+00
8GO:0016639: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor0.00E+00
9GO:0032442: phenylcoumaran benzylic ether reductase activity0.00E+00
10GO:0050269: coniferyl-aldehyde dehydrogenase activity0.00E+00
11GO:0016301: kinase activity7.78E-12
12GO:0004674: protein serine/threonine kinase activity6.18E-11
13GO:0005524: ATP binding3.69E-09
14GO:0003756: protein disulfide isomerase activity2.44E-05
15GO:0004449: isocitrate dehydrogenase (NAD+) activity5.22E-05
16GO:0005509: calcium ion binding8.08E-05
17GO:0005459: UDP-galactose transmembrane transporter activity1.43E-04
18GO:0004656: procollagen-proline 4-dioxygenase activity2.77E-04
19GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors2.84E-04
20GO:0005506: iron ion binding3.81E-04
21GO:0015398: high-affinity secondary active ammonium transmembrane transporter activity3.92E-04
22GO:0004591: oxoglutarate dehydrogenase (succinyl-transferring) activity3.92E-04
23GO:0048037: cofactor binding3.92E-04
24GO:0008909: isochorismate synthase activity3.92E-04
25GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity3.92E-04
26GO:0015165: pyrimidine nucleotide-sugar transmembrane transporter activity3.92E-04
27GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity3.92E-04
28GO:0004425: indole-3-glycerol-phosphate synthase activity3.92E-04
29GO:1901149: salicylic acid binding3.92E-04
30GO:0004714: transmembrane receptor protein tyrosine kinase activity4.48E-04
31GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen7.00E-04
32GO:0004775: succinate-CoA ligase (ADP-forming) activity8.49E-04
33GO:0004776: succinate-CoA ligase (GDP-forming) activity8.49E-04
34GO:0019781: NEDD8 activating enzyme activity8.49E-04
35GO:0003994: aconitate hydratase activity8.49E-04
36GO:0004713: protein tyrosine kinase activity9.02E-04
37GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity1.38E-03
38GO:0004148: dihydrolipoyl dehydrogenase activity1.38E-03
39GO:0004383: guanylate cyclase activity1.38E-03
40GO:0000030: mannosyltransferase activity1.38E-03
41GO:0005093: Rab GDP-dissociation inhibitor activity1.38E-03
42GO:0016531: copper chaperone activity1.38E-03
43GO:0004190: aspartic-type endopeptidase activity1.70E-03
44GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.71E-03
45GO:0005507: copper ion binding1.77E-03
46GO:0035529: NADH pyrophosphatase activity1.99E-03
47GO:0005460: UDP-glucose transmembrane transporter activity1.99E-03
48GO:0031418: L-ascorbic acid binding2.10E-03
49GO:0004298: threonine-type endopeptidase activity2.54E-03
50GO:0004031: aldehyde oxidase activity2.67E-03
51GO:0050302: indole-3-acetaldehyde oxidase activity2.67E-03
52GO:0008641: small protein activating enzyme activity3.42E-03
53GO:0017137: Rab GTPase binding3.42E-03
54GO:0047631: ADP-ribose diphosphatase activity3.42E-03
55GO:0004356: glutamate-ammonia ligase activity3.42E-03
56GO:0045431: flavonol synthase activity3.42E-03
57GO:0010294: abscisic acid glucosyltransferase activity3.42E-03
58GO:0000210: NAD+ diphosphatase activity4.23E-03
59GO:0004029: aldehyde dehydrogenase (NAD) activity4.23E-03
60GO:0008519: ammonium transmembrane transporter activity4.23E-03
61GO:0030976: thiamine pyrophosphate binding4.23E-03
62GO:1990714: hydroxyproline O-galactosyltransferase activity4.23E-03
63GO:0010181: FMN binding4.49E-03
64GO:0016853: isomerase activity4.49E-03
65GO:0033743: peptide-methionine (R)-S-oxide reductase activity5.09E-03
66GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity5.09E-03
67GO:0102391: decanoate--CoA ligase activity5.09E-03
68GO:0004012: phospholipid-translocating ATPase activity5.09E-03
69GO:0004747: ribokinase activity5.09E-03
70GO:0008113: peptide-methionine (S)-S-oxide reductase activity5.09E-03
71GO:0019825: oxygen binding5.69E-03
72GO:0008320: protein transmembrane transporter activity6.02E-03
73GO:0004467: long-chain fatty acid-CoA ligase activity6.02E-03
74GO:0051082: unfolded protein binding6.12E-03
75GO:0015035: protein disulfide oxidoreductase activity6.35E-03
76GO:0050660: flavin adenine dinucleotide binding6.48E-03
77GO:0004034: aldose 1-epimerase activity7.00E-03
78GO:0043022: ribosome binding7.00E-03
79GO:0008865: fructokinase activity7.00E-03
80GO:0004708: MAP kinase kinase activity7.00E-03
81GO:0008233: peptidase activity7.01E-03
82GO:0051213: dioxygenase activity7.46E-03
83GO:0008135: translation factor activity, RNA binding8.03E-03
84GO:0003843: 1,3-beta-D-glucan synthase activity8.03E-03
85GO:0004672: protein kinase activity8.78E-03
86GO:0030247: polysaccharide binding8.80E-03
87GO:0004683: calmodulin-dependent protein kinase activity8.80E-03
88GO:0008757: S-adenosylmethionine-dependent methyltransferase activity9.27E-03
89GO:0045309: protein phosphorylated amino acid binding1.03E-02
90GO:0030955: potassium ion binding1.03E-02
91GO:0016844: strictosidine synthase activity1.03E-02
92GO:0015112: nitrate transmembrane transporter activity1.03E-02
93GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity1.03E-02
94GO:0004743: pyruvate kinase activity1.03E-02
95GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.12E-02
96GO:0050897: cobalt ion binding1.13E-02
97GO:0004568: chitinase activity1.14E-02
98GO:0008171: O-methyltransferase activity1.14E-02
99GO:0003746: translation elongation factor activity1.24E-02
100GO:0019904: protein domain specific binding1.27E-02
101GO:0004129: cytochrome-c oxidase activity1.27E-02
102GO:0008794: arsenate reductase (glutaredoxin) activity1.27E-02
103GO:0008559: xenobiotic-transporting ATPase activity1.27E-02
104GO:0008378: galactosyltransferase activity1.40E-02
105GO:0051539: 4 iron, 4 sulfur cluster binding1.42E-02
106GO:0009055: electron carrier activity1.45E-02
107GO:0005388: calcium-transporting ATPase activity1.53E-02
108GO:0004022: alcohol dehydrogenase (NAD) activity1.53E-02
109GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.53E-02
110GO:0031072: heat shock protein binding1.53E-02
111GO:0005262: calcium channel activity1.53E-02
112GO:0003712: transcription cofactor activity1.81E-02
113GO:0004970: ionotropic glutamate receptor activity1.81E-02
114GO:0005217: intracellular ligand-gated ion channel activity1.81E-02
115GO:0051287: NAD binding1.94E-02
116GO:0000287: magnesium ion binding2.09E-02
117GO:0015171: amino acid transmembrane transporter activity2.40E-02
118GO:0031625: ubiquitin protein ligase binding2.40E-02
119GO:0033612: receptor serine/threonine kinase binding2.41E-02
120GO:0020037: heme binding2.69E-02
121GO:0080043: quercetin 3-O-glucosyltransferase activity2.82E-02
122GO:0080044: quercetin 7-O-glucosyltransferase activity2.82E-02
123GO:0003779: actin binding2.99E-02
124GO:0004791: thioredoxin-disulfide reductase activity3.61E-02
125GO:0016758: transferase activity, transferring hexosyl groups3.75E-02
126GO:0004197: cysteine-type endopeptidase activity4.17E-02
127GO:0046872: metal ion binding4.17E-02
128GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.36E-02
129GO:0030246: carbohydrate binding4.69E-02
130GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity4.76E-02
131GO:0016491: oxidoreductase activity4.98E-02
RankGO TermAdjusted P value
1GO:0000327: lytic vacuole within protein storage vacuole0.00E+00
2GO:0005886: plasma membrane2.36E-11
3GO:0005783: endoplasmic reticulum9.87E-09
4GO:0016021: integral component of membrane3.17E-07
5GO:0005788: endoplasmic reticulum lumen3.89E-07
6GO:0030173: integral component of Golgi membrane2.77E-04
7GO:0005829: cytosol3.07E-04
8GO:0045252: oxoglutarate dehydrogenase complex3.92E-04
9GO:0005911: cell-cell junction3.92E-04
10GO:0019773: proteasome core complex, alpha-subunit complex5.48E-04
11GO:0005901: caveola8.49E-04
12GO:0030134: ER to Golgi transport vesicle8.49E-04
13GO:0016020: membrane1.18E-03
14GO:0030176: integral component of endoplasmic reticulum membrane1.70E-03
15GO:0005968: Rab-protein geranylgeranyltransferase complex1.99E-03
16GO:0005839: proteasome core complex2.54E-03
17GO:0009898: cytoplasmic side of plasma membrane2.67E-03
18GO:0005746: mitochondrial respiratory chain3.42E-03
19GO:0005789: endoplasmic reticulum membrane3.46E-03
20GO:0005774: vacuolar membrane4.01E-03
21GO:0005801: cis-Golgi network5.09E-03
22GO:0016592: mediator complex5.51E-03
23GO:0000148: 1,3-beta-D-glucan synthase complex8.03E-03
24GO:0000326: protein storage vacuole8.03E-03
25GO:0030665: clathrin-coated vesicle membrane1.03E-02
26GO:0017119: Golgi transport complex1.14E-02
27GO:0005794: Golgi apparatus1.26E-02
28GO:0005758: mitochondrial intermembrane space2.10E-02
29GO:0000502: proteasome complex2.16E-02
30GO:0015629: actin cytoskeleton2.73E-02
31GO:0009506: plasmodesma3.49E-02
32GO:0009504: cell plate3.79E-02
33GO:0019898: extrinsic component of membrane3.79E-02
34GO:0005759: mitochondrial matrix4.82E-02
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Gene type



Gene DE type