co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G64405

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006182: cGMP biosynthetic process	0.00E+00
2	GO:0072722: response to amitrole	0.00E+00
3	GO:0044794: positive regulation by host of viral process	0.00E+00
4	GO:0002191: cap-dependent translational initiation	0.00E+00
5	GO:0042430: indole-containing compound metabolic process	0.00E+00
6	GO:0006616: SRP-dependent cotranslational protein targeting to membrane, translocation	0.00E+00
7	GO:0006793: phosphorus metabolic process	0.00E+00
8	GO:2000541: positive regulation of protein geranylgeranylation	0.00E+00
9	GO:0006457: protein folding	4.23E-13
10	GO:0034976: response to endoplasmic reticulum stress	1.50E-11
11	GO:0046686: response to cadmium ion	2.95E-08
12	GO:0006102: isocitrate metabolic process	1.12E-07
13	GO:0009617: response to bacterium	6.58E-07
14	GO:0006099: tricarboxylic acid cycle	8.17E-07
15	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	4.04E-06
16	GO:0055114: oxidation-reduction process	5.08E-06
17	GO:0042742: defense response to bacterium	7.03E-06
18	GO:0045454: cell redox homeostasis	7.64E-06
19	GO:0009697: salicylic acid biosynthetic process	1.07E-04
20	GO:0006979: response to oxidative stress	1.86E-04
21	GO:0006468: protein phosphorylation	2.27E-04
22	GO:0009306: protein secretion	2.53E-04
23	GO:0034975: protein folding in endoplasmic reticulum	3.27E-04
24	GO:0006047: UDP-N-acetylglucosamine metabolic process	3.27E-04
25	GO:1990641: response to iron ion starvation	3.27E-04
26	GO:0010421: hydrogen peroxide-mediated programmed cell death	3.27E-04
27	GO:1990022: RNA polymerase III complex localization to nucleus	3.27E-04
28	GO:0044376: RNA polymerase II complex import to nucleus	3.27E-04
29	GO:0043687: post-translational protein modification	3.27E-04
30	GO:0050691: regulation of defense response to virus by host	3.27E-04
31	GO:0042964: thioredoxin reduction	3.27E-04
32	GO:0046244: salicylic acid catabolic process	3.27E-04
33	GO:0019276: UDP-N-acetylgalactosamine metabolic process	3.27E-04
34	GO:0010150: leaf senescence	3.42E-04
35	GO:0015031: protein transport	3.64E-04
36	GO:0010120: camalexin biosynthetic process	4.21E-04
37	GO:0030968: endoplasmic reticulum unfolded protein response	4.21E-04
38	GO:0007264: small GTPase mediated signal transduction	4.99E-04
39	GO:0031204: posttranslational protein targeting to membrane, translocation	7.13E-04
40	GO:0045901: positive regulation of translational elongation	7.13E-04
41	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	7.13E-04
42	GO:0006452: translational frameshifting	7.13E-04
43	GO:0006101: citrate metabolic process	7.13E-04
44	GO:0044419: interspecies interaction between organisms	7.13E-04
45	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	7.13E-04
46	GO:0080026: response to indolebutyric acid	7.13E-04
47	GO:0030003: cellular cation homeostasis	7.13E-04
48	GO:0045905: positive regulation of translational termination	7.13E-04
49	GO:0051592: response to calcium ion	7.13E-04
50	GO:0009553: embryo sac development	7.39E-04
51	GO:0009682: induced systemic resistance	8.05E-04
52	GO:0006011: UDP-glucose metabolic process	1.16E-03
53	GO:0010272: response to silver ion	1.16E-03
54	GO:0006421: asparaginyl-tRNA aminoacylation	1.16E-03
55	GO:0006048: UDP-N-acetylglucosamine biosynthetic process	1.16E-03
56	GO:0009062: fatty acid catabolic process	1.16E-03
57	GO:0055074: calcium ion homeostasis	1.16E-03
58	GO:0010351: lithium ion transport	1.16E-03
59	GO:0002237: response to molecule of bacterial origin	1.17E-03
60	GO:0002239: response to oomycetes	1.66E-03
61	GO:0072334: UDP-galactose transmembrane transport	1.66E-03
62	GO:0080024: indolebutyric acid metabolic process	1.66E-03
63	GO:0006882: cellular zinc ion homeostasis	1.66E-03
64	GO:0010116: positive regulation of abscisic acid biosynthetic process	1.66E-03
65	GO:0009651: response to salt stress	1.73E-03
66	GO:0006874: cellular calcium ion homeostasis	1.78E-03
67	GO:0009751: response to salicylic acid	2.12E-03
68	GO:0071456: cellular response to hypoxia	2.14E-03
69	GO:0031348: negative regulation of defense response	2.14E-03
70	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	2.23E-03
71	GO:0006097: glyoxylate cycle	2.84E-03
72	GO:0018344: protein geranylgeranylation	2.84E-03
73	GO:0010225: response to UV-C	2.84E-03
74	GO:0000304: response to singlet oxygen	2.84E-03
75	GO:0034052: positive regulation of plant-type hypersensitive response	2.84E-03
76	GO:0018279: protein N-linked glycosylation via asparagine	2.84E-03
77	GO:0001731: formation of translation preinitiation complex	3.51E-03
78	GO:0010256: endomembrane system organization	3.51E-03
79	GO:0047484: regulation of response to osmotic stress	3.51E-03
80	GO:0006561: proline biosynthetic process	3.51E-03
81	GO:0000302: response to reactive oxygen species	3.94E-03
82	GO:0042372: phylloquinone biosynthetic process	4.23E-03
83	GO:0030163: protein catabolic process	4.49E-03
84	GO:0006744: ubiquinone biosynthetic process	4.99E-03
85	GO:1900056: negative regulation of leaf senescence	4.99E-03
86	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	4.99E-03
87	GO:0042773: ATP synthesis coupled electron transport	4.99E-03
88	GO:0030026: cellular manganese ion homeostasis	4.99E-03
89	GO:1902074: response to salt	4.99E-03
90	GO:0009615: response to virus	5.70E-03
91	GO:0030091: protein repair	5.80E-03
92	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	5.80E-03
93	GO:0006605: protein targeting	5.80E-03
94	GO:0009627: systemic acquired resistance	6.36E-03
95	GO:0017004: cytochrome complex assembly	6.65E-03
96	GO:0009808: lignin metabolic process	6.65E-03
97	GO:0009699: phenylpropanoid biosynthetic process	6.65E-03
98	GO:0015996: chlorophyll catabolic process	6.65E-03
99	GO:0019430: removal of superoxide radicals	6.65E-03
100	GO:0006367: transcription initiation from RNA polymerase II promoter	6.65E-03
101	GO:0009817: defense response to fungus, incompatible interaction	7.44E-03
102	GO:0015780: nucleotide-sugar transport	7.54E-03
103	GO:0046685: response to arsenic-containing substance	7.54E-03
104	GO:0006098: pentose-phosphate shunt	7.54E-03
105	GO:0010112: regulation of systemic acquired resistance	7.54E-03
106	GO:0009060: aerobic respiration	7.54E-03
107	GO:0006413: translational initiation	7.97E-03
108	GO:0006499: N-terminal protein myristoylation	8.21E-03
109	GO:0010205: photoinhibition	8.48E-03
110	GO:0043067: regulation of programmed cell death	8.48E-03
111	GO:0030042: actin filament depolymerization	8.48E-03
112	GO:0055062: phosphate ion homeostasis	9.45E-03
113	GO:0006032: chitin catabolic process	9.45E-03
114	GO:0009688: abscisic acid biosynthetic process	9.45E-03
115	GO:0006511: ubiquitin-dependent protein catabolic process	1.01E-02
116	GO:0006816: calcium ion transport	1.05E-02
117	GO:0000272: polysaccharide catabolic process	1.05E-02
118	GO:0016485: protein processing	1.05E-02
119	GO:0006790: sulfur compound metabolic process	1.15E-02
120	GO:0012501: programmed cell death	1.15E-02
121	GO:0015706: nitrate transport	1.15E-02
122	GO:0002213: defense response to insect	1.15E-02
123	GO:0042542: response to hydrogen peroxide	1.17E-02
124	GO:0009718: anthocyanin-containing compound biosynthetic process	1.26E-02
125	GO:0010075: regulation of meristem growth	1.26E-02
126	GO:0006094: gluconeogenesis	1.26E-02
127	GO:0009934: regulation of meristem structural organization	1.37E-02
128	GO:0006446: regulation of translational initiation	1.37E-02
129	GO:0031347: regulation of defense response	1.48E-02
130	GO:0042343: indole glucosinolate metabolic process	1.49E-02
131	GO:0046688: response to copper ion	1.49E-02
132	GO:0010167: response to nitrate	1.49E-02
133	GO:0046854: phosphatidylinositol phosphorylation	1.49E-02
134	GO:0009846: pollen germination	1.54E-02
135	GO:0051603: proteolysis involved in cellular protein catabolic process	1.71E-02
136	GO:0005992: trehalose biosynthetic process	1.73E-02
137	GO:0080147: root hair cell development	1.73E-02
138	GO:0006825: copper ion transport	1.86E-02
139	GO:0006096: glycolytic process	1.95E-02
140	GO:0098542: defense response to other organism	1.99E-02
141	GO:0016998: cell wall macromolecule catabolic process	1.99E-02
142	GO:0048316: seed development	2.02E-02
143	GO:0009555: pollen development	2.05E-02
144	GO:0019748: secondary metabolic process	2.12E-02
145	GO:0030433: ubiquitin-dependent ERAD pathway	2.12E-02
146	GO:0009620: response to fungus	2.15E-02
147	GO:0044550: secondary metabolite biosynthetic process	2.22E-02
148	GO:0009624: response to nematode	2.35E-02
149	GO:0010089: xylem development	2.39E-02
150	GO:0010584: pollen exine formation	2.39E-02
151	GO:0006886: intracellular protein transport	2.60E-02
152	GO:0010118: stomatal movement	2.68E-02
153	GO:0008033: tRNA processing	2.68E-02
154	GO:0000413: protein peptidyl-prolyl isomerization	2.68E-02
155	GO:0010197: polar nucleus fusion	2.82E-02
156	GO:0048868: pollen tube development	2.82E-02
157	GO:0006814: sodium ion transport	2.97E-02
158	GO:0032259: methylation	3.08E-02
159	GO:0009851: auxin biosynthetic process	3.12E-02
160	GO:0009408: response to heat	3.25E-02
161	GO:0080156: mitochondrial mRNA modification	3.28E-02
162	GO:0002229: defense response to oomycetes	3.28E-02
163	GO:0010193: response to ozone	3.28E-02
164	GO:0006635: fatty acid beta-oxidation	3.28E-02
165	GO:0009790: embryo development	3.43E-02
166	GO:0016032: viral process	3.44E-02
167	GO:0009567: double fertilization forming a zygote and endosperm	3.76E-02
168	GO:0010252: auxin homeostasis	3.76E-02
169	GO:0006464: cellular protein modification process	3.76E-02
170	GO:0016126: sterol biosynthetic process	4.26E-02
171	GO:0042128: nitrate assimilation	4.61E-02
172	GO:0006906: vesicle fusion	4.61E-02
173	GO:0007166: cell surface receptor signaling pathway	4.63E-02
174	GO:0016311: dephosphorylation	4.96E-02
175	GO:0016049: cell growth	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0050269: coniferyl-aldehyde dehydrogenase activity	0.00E+00
2	GO:0051670: inulinase activity	0.00E+00
3	GO:0004631: phosphomevalonate kinase activity	0.00E+00
4	GO:0047720: indoleacetaldoxime dehydratase activity	0.00E+00
5	GO:0098808: mRNA cap binding	0.00E+00
6	GO:0016312: inositol bisphosphate phosphatase activity	0.00E+00
7	GO:0005092: GDP-dissociation inhibitor activity	0.00E+00
8	GO:0015165: pyrimidine nucleotide-sugar transmembrane transporter activity	0.00E+00
9	GO:0003756: protein disulfide isomerase activity	1.56E-10
10	GO:0004449: isocitrate dehydrogenase (NAD+) activity	1.84E-07
11	GO:0004298: threonine-type endopeptidase activity	8.02E-06
12	GO:0051082: unfolded protein binding	1.10E-05
13	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.15E-05
14	GO:0005093: Rab GDP-dissociation inhibitor activity	1.71E-05
15	GO:0004674: protein serine/threonine kinase activity	2.80E-05
16	GO:0005460: UDP-glucose transmembrane transporter activity	3.81E-05
17	GO:0005459: UDP-galactose transmembrane transporter activity	1.07E-04
18	GO:0005524: ATP binding	1.10E-04
19	GO:0009055: electron carrier activity	1.30E-04
20	GO:0005509: calcium ion binding	1.42E-04
21	GO:0050660: flavin adenine dinucleotide binding	1.99E-04
22	GO:0052630: UDP-N-acetylgalactosamine diphosphorylase activity	3.27E-04
23	GO:0051669: fructan beta-fructosidase activity	3.27E-04
24	GO:0048037: cofactor binding	3.27E-04
25	GO:0008909: isochorismate synthase activity	3.27E-04
26	GO:0003977: UDP-N-acetylglucosamine diphosphorylase activity	3.27E-04
27	GO:0031219: levanase activity	3.27E-04
28	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	3.27E-04
29	GO:0016301: kinase activity	3.94E-04
30	GO:0003994: aconitate hydratase activity	7.13E-04
31	GO:0004775: succinate-CoA ligase (ADP-forming) activity	7.13E-04
32	GO:0015036: disulfide oxidoreductase activity	7.13E-04
33	GO:0004776: succinate-CoA ligase (GDP-forming) activity	7.13E-04
34	GO:0005507: copper ion binding	9.79E-04
35	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.02E-03
36	GO:0008233: peptidase activity	1.06E-03
37	GO:0000030: mannosyltransferase activity	1.16E-03
38	GO:0016531: copper chaperone activity	1.16E-03
39	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	1.16E-03
40	GO:0004148: dihydrolipoyl dehydrogenase activity	1.16E-03
41	GO:0004816: asparagine-tRNA ligase activity	1.16E-03
42	GO:0004383: guanylate cyclase activity	1.16E-03
43	GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity	1.16E-03
44	GO:0016491: oxidoreductase activity	1.26E-03
45	GO:0051539: 4 iron, 4 sulfur cluster binding	1.62E-03
46	GO:0035529: NADH pyrophosphatase activity	1.66E-03
47	GO:0004165: dodecenoyl-CoA delta-isomerase activity	1.66E-03
48	GO:0051537: 2 iron, 2 sulfur cluster binding	2.09E-03
49	GO:0015369: calcium:proton antiporter activity	2.23E-03
50	GO:0005086: ARF guanyl-nucleotide exchange factor activity	2.23E-03
51	GO:0004031: aldehyde oxidase activity	2.23E-03
52	GO:0050302: indole-3-acetaldehyde oxidase activity	2.23E-03
53	GO:0004576: oligosaccharyl transferase activity	2.23E-03
54	GO:0016004: phospholipase activator activity	2.23E-03
55	GO:0010279: indole-3-acetic acid amido synthetase activity	2.23E-03
56	GO:0015368: calcium:cation antiporter activity	2.23E-03
57	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	2.84E-03
58	GO:0017137: Rab GTPase binding	2.84E-03
59	GO:0005496: steroid binding	2.84E-03
60	GO:0047631: ADP-ribose diphosphatase activity	2.84E-03
61	GO:0010181: FMN binding	3.43E-03
62	GO:0004332: fructose-bisphosphate aldolase activity	3.51E-03
63	GO:0000210: NAD+ diphosphatase activity	3.51E-03
64	GO:0004029: aldehyde dehydrogenase (NAD) activity	3.51E-03
65	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	4.23E-03
66	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	4.23E-03
67	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	4.23E-03
68	GO:0005261: cation channel activity	4.23E-03
69	GO:0004656: procollagen-proline 4-dioxygenase activity	4.23E-03
70	GO:0008121: ubiquinol-cytochrome-c reductase activity	4.99E-03
71	GO:0008320: protein transmembrane transporter activity	4.99E-03
72	GO:0043022: ribosome binding	5.80E-03
73	GO:0015491: cation:cation antiporter activity	5.80E-03
74	GO:0005506: iron ion binding	6.46E-03
75	GO:0008135: translation factor activity, RNA binding	6.65E-03
76	GO:0004683: calmodulin-dependent protein kinase activity	6.71E-03
77	GO:0030247: polysaccharide binding	6.71E-03
78	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	7.06E-03
79	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	7.07E-03
80	GO:0005096: GTPase activator activity	7.82E-03
81	GO:0004222: metalloendopeptidase activity	8.21E-03
82	GO:0015112: nitrate transmembrane transporter activity	8.48E-03
83	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	8.48E-03
84	GO:0004743: pyruvate kinase activity	8.48E-03
85	GO:0045309: protein phosphorylated amino acid binding	8.48E-03
86	GO:0030955: potassium ion binding	8.48E-03
87	GO:0003746: translation elongation factor activity	9.44E-03
88	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	9.44E-03
89	GO:0004568: chitinase activity	9.45E-03
90	GO:0008171: O-methyltransferase activity	9.45E-03
91	GO:0030246: carbohydrate binding	9.98E-03
92	GO:0004129: cytochrome-c oxidase activity	1.05E-02
93	GO:0019904: protein domain specific binding	1.05E-02
94	GO:0008559: xenobiotic-transporting ATPase activity	1.05E-02
95	GO:0003743: translation initiation factor activity	1.06E-02
96	GO:0005262: calcium channel activity	1.26E-02
97	GO:0004022: alcohol dehydrogenase (NAD) activity	1.26E-02
98	GO:0051287: NAD binding	1.48E-02
99	GO:0008061: chitin binding	1.49E-02
100	GO:0003712: transcription cofactor activity	1.49E-02
101	GO:0004970: ionotropic glutamate receptor activity	1.49E-02
102	GO:0005217: intracellular ligand-gated ion channel activity	1.49E-02
103	GO:0020037: heme binding	1.61E-02
104	GO:0051536: iron-sulfur cluster binding	1.73E-02
105	GO:0031418: L-ascorbic acid binding	1.73E-02
106	GO:0003954: NADH dehydrogenase activity	1.73E-02
107	GO:0016779: nucleotidyltransferase activity	2.12E-02
108	GO:0015035: protein disulfide oxidoreductase activity	2.42E-02
109	GO:0004791: thioredoxin-disulfide reductase activity	2.97E-02
110	GO:0016853: isomerase activity	2.97E-02
111	GO:0008137: NADH dehydrogenase (ubiquinone) activity	3.28E-02
112	GO:0019825: oxygen binding	3.44E-02
113	GO:0004197: cysteine-type endopeptidase activity	3.44E-02
114	GO:0008565: protein transporter activity	3.52E-02
115	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.60E-02
116	GO:0008237: metallopeptidase activity	3.92E-02
117	GO:0051213: dioxygenase activity	4.26E-02
118	GO:0009931: calcium-dependent protein serine/threonine kinase activity	4.61E-02

Rank	GO Term	Adjusted P value
1	GO:0005784: Sec61 translocon complex	0.00E+00
2	GO:0031205: endoplasmic reticulum Sec complex	0.00E+00
3	GO:0000327: lytic vacuole within protein storage vacuole	0.00E+00
4	GO:0005783: endoplasmic reticulum	1.19E-20
5	GO:0005788: endoplasmic reticulum lumen	9.76E-18
6	GO:0005774: vacuolar membrane	7.78E-07
7	GO:0005886: plasma membrane	5.34E-06
8	GO:0005839: proteasome core complex	8.02E-06
9	GO:0005829: cytosol	1.68E-05
10	GO:0000502: proteasome complex	5.34E-05
11	GO:0005750: mitochondrial respiratory chain complex III	8.01E-05
12	GO:0005746: mitochondrial respiratory chain	1.07E-04
13	GO:0045252: oxoglutarate dehydrogenase complex	3.27E-04
14	GO:0019773: proteasome core complex, alpha-subunit complex	4.21E-04
15	GO:0016020: membrane	5.24E-04
16	GO:0031314: extrinsic component of mitochondrial inner membrane	7.13E-04
17	GO:0030134: ER to Golgi transport vesicle	7.13E-04
18	GO:0016021: integral component of membrane	7.44E-04
19	GO:0005672: transcription factor TFIIA complex	1.16E-03
20	GO:0030176: integral component of endoplasmic reticulum membrane	1.31E-03
21	GO:0005758: mitochondrial intermembrane space	1.61E-03
22	GO:0005968: Rab-protein geranylgeranyltransferase complex	1.66E-03
23	GO:0005789: endoplasmic reticulum membrane	1.80E-03
24	GO:0008250: oligosaccharyltransferase complex	2.84E-03
25	GO:0016282: eukaryotic 43S preinitiation complex	3.51E-03
26	GO:0016592: mediator complex	4.21E-03
27	GO:0030173: integral component of Golgi membrane	4.23E-03
28	GO:0005801: cis-Golgi network	4.23E-03
29	GO:0033290: eukaryotic 48S preinitiation complex	4.23E-03
30	GO:0000326: protein storage vacuole	6.65E-03
31	GO:0005777: peroxisome	7.57E-03
32	GO:0005759: mitochondrial matrix	7.73E-03
33	GO:0009536: plastid	9.92E-03
34	GO:0005794: Golgi apparatus	9.97E-03
35	GO:0009505: plant-type cell wall	1.03E-02
36	GO:0008541: proteasome regulatory particle, lid subcomplex	1.05E-02
37	GO:0048046: apoplast	1.38E-02
38	GO:0005773: vacuole	1.43E-02
39	GO:0009507: chloroplast	1.46E-02
40	GO:0031966: mitochondrial membrane	1.54E-02
41	GO:0045271: respiratory chain complex I	1.86E-02
42	GO:0005741: mitochondrial outer membrane	1.99E-02
43	GO:0005747: mitochondrial respiratory chain complex I	2.02E-02
44	GO:0005834: heterotrimeric G-protein complex	2.08E-02
45	GO:0015629: actin cytoskeleton	2.25E-02
46	GO:0005739: mitochondrion	2.44E-02
47	GO:0005743: mitochondrial inner membrane	2.97E-02
48	GO:0005623: cell	3.02E-02
49	GO:0009705: plant-type vacuole membrane	4.05E-02